Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35950 * 116.99570 * 2 1 4 4 C 1.38704 * 119.93302 * 0.02562 * 3 2 1 5 5 C 1.37936 * 120.14610 * 180.02562 * 4 3 2 6 6 C 1.39579 * 120.00297 * 0.02562 * 5 4 3 7 7 C 1.47810 * 120.06995 * 179.97438 * 6 5 4 8 8 N 1.30256 * 125.47424 * 0.02562 * 7 6 5 9 9 C 1.31360 * 117.02041 * 180.02562 * 8 7 6 10 10 C 1.50700 * 122.07308 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46783 * 304.97171 * 10 9 8 12 12 O 1.21276 * 120.00511 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99729 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00269 * 0.02562 * 13 11 10 15 15 C 1.46503 * 119.99843 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46581 * 90.00477 * 15 13 11 17 17 H 1.07994 * 120.00391 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99722 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00109 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47388 * 89.99681 * 20 18 16 22 22 H 1.48501 * 109.47109 * 209.99859 * 20 18 16 23 23 H 1.48497 * 109.46893 * 329.99640 * 20 18 16 24 24 C 1.33667 * 115.85176 * 359.97438 * 9 8 7 25 25 S 1.76171 * 125.47611 * 180.02562 * 7 6 5 26 26 C 1.39586 * 119.86147 * 0.27903 * 6 5 4 27 27 C 1.38273 * 119.85690 * 359.44315 * 26 6 5 28 28 O 1.35990 * 120.00599 * 180.29822 * 27 26 6 29 29 C 1.42902 * 116.99845 * 0.25587 * 28 27 26 30 30 H 1.08998 * 109.47291 * 59.99516 * 1 2 3 31 31 H 1.08997 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47205 * 299.99741 * 1 2 3 33 33 H 1.08002 * 119.93010 * 0.04604 * 4 3 2 34 34 H 1.07998 * 119.99604 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47474 * 64.97774 * 10 9 8 36 36 H 1.09004 * 109.46862 * 184.97797 * 10 9 8 37 37 H 1.08994 * 109.47406 * 89.99118 * 14 13 11 38 38 H 1.08998 * 109.47506 * 210.00202 * 14 13 11 39 39 H 1.09009 * 109.46562 * 329.99536 * 14 13 11 40 40 H 1.08996 * 109.47197 * 210.00150 * 15 13 11 41 41 H 1.08992 * 109.47237 * 330.00389 * 15 13 11 42 42 H 0.97002 * 120.00342 * 180.02562 * 19 18 16 43 43 H 1.08000 * 125.87921 * 180.26229 * 24 9 8 44 44 H 1.07995 * 120.07431 * 179.72419 * 26 6 5 45 45 H 1.08991 * 109.47179 * 299.99967 * 29 28 27 46 46 H 1.08998 * 109.47108 * 60.00389 * 29 28 27 47 47 H 1.09002 * 109.46895 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2892 2.3737 0.0005 5 6 1.9108 3.6051 0.0000 6 6 3.3044 3.6835 -0.0016 7 6 3.9720 5.0022 -0.0028 8 7 3.3669 6.1558 -0.0019 9 6 4.1261 7.2278 -0.0037 10 6 3.5464 8.6189 -0.0024 11 6 2.5988 8.7691 -1.1645 12 8 2.4128 7.8386 -1.9197 13 7 1.9587 9.9382 -1.3652 14 6 2.1845 11.0628 -0.4540 15 6 1.0379 10.0845 -2.4953 16 6 -0.3510 9.6872 -2.0661 17 1 -0.5299 9.3583 -1.0531 18 6 -1.3933 9.7428 -2.9670 19 7 -1.1754 10.1428 -4.2007 20 14 -3.1148 9.2497 -2.4353 21 1 -3.8313 10.4404 -1.9118 22 1 -3.8540 8.6996 -3.5998 23 1 -3.0276 8.2172 -1.3716 24 6 5.4446 7.0083 -0.0057 25 16 5.7137 5.2665 -0.0055 26 6 4.0663 2.5139 -0.0086 27 6 3.4373 1.2826 -0.0022 28 8 4.1766 0.1412 -0.0028 29 6 5.5980 0.2890 -0.0046 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2108 2.3145 0.0017 34 1 1.3191 4.5086 0.0008 35 1 3.0075 8.7871 0.9300 36 1 4.3515 9.3480 -0.0935 37 1 3.0163 11.6650 -0.8192 38 1 1.2853 11.6770 -0.4049 39 1 2.4198 10.6832 0.5403 40 1 1.0325 11.1225 -2.8275 41 1 1.3627 9.4426 -3.3141 42 1 -1.9087 10.1823 -4.8345 43 1 6.2127 7.7676 -0.0033 44 1 5.1447 2.5706 -0.0144 45 1 5.9051 0.8374 -0.8950 46 1 5.9073 0.8378 0.8849 47 1 6.0656 -0.6956 -0.0054 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057814188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -25.725766 kcal Electronic energy + Delta-G solvation = -31109.973429 eV Core-core repulsion = 26772.303878 eV Total energy + Delta-G solvation = -4337.669551 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.79042 -39.93356 -38.68195 -38.43417 -37.04765 -34.70099 -32.77646 -32.34217 -30.68052 -30.36875 -28.64661 -27.48917 -27.47353 -27.23282 -25.64271 -24.66964 -22.89609 -22.43841 -21.61439 -19.51961 -18.84189 -18.55082 -17.67181 -17.07810 -16.65209 -16.51164 -16.31400 -16.23744 -15.66847 -15.47180 -15.16241 -14.95219 -14.77659 -14.65161 -14.30857 -14.20692 -13.78122 -13.41971 -13.01515 -12.95002 -12.74417 -12.48535 -12.41244 -12.35161 -12.14478 -11.83674 -11.80354 -11.61086 -11.42812 -11.38319 -11.32296 -11.21855 -11.11430 -10.85309 -10.53531 -10.12035 -9.59142 -9.56307 -9.53937 -9.12971 -8.86943 -8.60686 -8.40340 -7.73837 -7.58124 -6.00866 -4.05066 0.22934 1.14339 1.30311 1.47737 1.67813 2.90589 2.99632 3.02727 3.31756 3.38157 3.42366 3.51701 3.62676 3.88894 4.08669 4.47966 4.55836 4.71101 4.76019 4.84061 4.91152 4.97637 5.01833 5.06111 5.10383 5.16276 5.21022 5.23721 5.30249 5.31660 5.37217 5.39019 5.51099 5.64907 5.70468 5.85658 5.95895 6.07733 6.22266 6.24844 6.33533 6.40313 6.78405 7.09535 7.31340 7.48402 7.59402 7.86726 7.96122 8.27809 8.46678 8.95186 9.17358 9.59821 11.07268 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.002671 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.106220 B =10481.625334 C =13405.191458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.115 3.885 4 C -0.174 4.174 5 C -0.056 4.056 6 C -0.022 4.022 7 C 0.125 3.875 8 N -0.425 5.425 9 C 0.103 3.897 10 C -0.072 4.072 11 C 0.508 3.492 12 O -0.522 6.522 13 N -0.606 5.606 14 C 0.083 3.917 15 C 0.247 3.753 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.248 4.248 25 S 0.057 5.943 26 C -0.152 4.152 27 C 0.097 3.903 28 O -0.305 6.305 29 C 0.024 3.976 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.263 0.737 43 H 0.178 0.822 44 H 0.137 0.863 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -14.762 12.904 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.068 3.932 4 C -0.193 4.193 5 C -0.078 4.078 6 C -0.026 4.026 7 C -0.151 4.151 8 N -0.137 5.137 9 C -0.030 4.030 10 C -0.115 4.115 11 C 0.293 3.707 12 O -0.398 6.398 13 N -0.339 5.339 14 C -0.061 4.061 15 C 0.128 3.872 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.386 4.386 25 S 0.313 5.687 26 C -0.173 4.173 27 C 0.052 3.948 28 O -0.219 6.219 29 C -0.071 4.071 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.196 0.804 44 H 0.154 0.846 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.450 -16.184 12.302 24.941 hybrid contribution -1.252 1.201 0.172 1.743 sum 13.198 -14.983 12.474 23.543 Atomic orbital electron populations 1.23127 0.78234 1.04076 1.01715 1.86148 1.21304 1.25808 1.88583 1.18399 0.89042 0.85340 1.00412 1.21095 1.00475 0.90926 1.06762 1.21135 0.92948 0.98131 0.95553 1.17418 0.92839 0.87550 1.04786 1.25628 0.90989 0.94903 1.03552 1.66286 1.37254 0.96715 1.13437 1.19573 0.88543 0.94595 1.00322 1.20419 0.99606 0.91063 1.00429 1.19940 0.81523 0.83134 0.86064 1.90702 1.64052 1.38310 1.46729 1.48136 1.44428 1.11124 1.30258 1.21638 1.01524 0.90186 0.92765 1.19255 0.86926 0.97357 0.83678 1.21438 0.92709 1.44431 0.97553 0.92471 1.24937 0.99218 0.95261 0.94765 1.69935 1.32284 1.47523 1.03823 0.86507 0.84051 0.78727 0.78220 1.20693 1.21126 1.19852 1.26631 0.99961 0.97997 1.14029 1.84562 1.10576 1.02434 1.71133 1.20943 0.99888 0.90251 1.06231 1.17871 0.88203 0.85618 1.03125 1.86175 1.18678 1.27738 1.89260 1.23097 0.78686 1.03954 1.01405 0.92291 0.88136 0.92433 0.83898 0.83561 0.87645 0.87980 0.93818 0.90780 0.92522 0.95104 0.93958 0.92784 0.80421 0.84554 0.92578 0.92647 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.64 10.27 -34.26 -0.35 -3.99 16 3 C 0.12 1.46 6.70 -39.02 -0.26 1.20 16 4 C -0.17 -2.14 9.02 -39.52 -0.36 -2.50 16 5 C -0.06 -0.81 9.67 -39.19 -0.38 -1.18 16 6 C -0.02 -0.31 5.87 -104.98 -0.62 -0.93 16 7 C 0.13 1.94 7.35 -14.31 -0.11 1.83 16 8 N -0.42 -7.63 9.21 -7.56 -0.07 -7.70 16 9 C 0.10 1.64 5.61 -84.40 -0.47 1.17 16 10 C -0.07 -1.09 4.72 -29.03 -0.14 -1.23 16 11 C 0.51 10.81 7.63 -10.98 -0.08 10.73 16 12 O -0.52 -13.65 15.00 5.56 0.08 -13.57 16 13 N -0.61 -12.99 2.86 -182.96 -0.52 -13.51 16 14 C 0.08 1.29 10.24 59.85 0.61 1.90 16 15 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 16 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 20 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.25 -3.18 11.01 29.13 0.32 -2.86 16 25 S 0.06 0.69 22.39 -107.50 -2.41 -1.72 16 26 C -0.15 -1.84 8.59 -39.07 -0.34 -2.18 16 27 C 0.10 1.22 6.69 -39.17 -0.26 0.96 16 28 O -0.30 -3.56 10.27 -34.39 -0.35 -3.91 16 29 C 0.02 0.17 9.81 101.05 0.99 1.17 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 33 H 0.14 1.43 6.27 -52.49 -0.33 1.10 16 34 H 0.15 2.31 7.81 -52.49 -0.41 1.90 16 35 H 0.11 1.42 7.40 -51.93 -0.38 1.03 16 36 H 0.10 1.17 7.97 -51.93 -0.41 0.75 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.70 6.44 -51.92 -0.33 0.36 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.14 1.35 5.52 -52.49 -0.29 1.06 16 45 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 46 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 411.10 15.07 6.20 6.20 Total: -1.00 -37.82 411.10 -8.46 -46.28 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.21 Total: -0.96 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.54 Total: 2.07 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.14 Total: -47.53 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.62 Total: -21.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.41 Total: -1.72 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.82 -8.46 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.557 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds