Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39336 * 119.58754 * 2 1 4 4 C 1.36130 * 121.09181 * 179.97438 * 3 2 1 5 5 C 1.40527 * 119.81742 * 0.02562 * 4 3 2 6 6 N 1.33813 * 120.82048 * 180.02562 * 5 4 3 7 7 C 1.30802 * 121.72071 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.23274 * 180.02562 * 7 6 5 9 9 C 1.40605 * 121.53344 * 359.97438 * 7 6 5 10 10 C 1.47756 * 120.26493 * 180.02562 * 9 7 6 11 11 O 1.21562 * 120.00217 * 306.09449 * 10 9 7 12 12 N 1.34779 * 119.99976 * 126.09899 * 10 9 7 13 13 C 1.46495 * 120.00119 * 4.75913 * 12 10 9 14 14 C 1.50707 * 109.46962 * 95.77151 * 13 12 10 15 15 H 1.08002 * 119.99723 * 355.23934 * 14 13 12 16 16 C 1.37876 * 120.00044 * 175.23994 * 14 13 12 17 17 N 1.31508 * 119.99719 * 185.15539 * 16 14 13 18 18 Si 1.86795 * 119.99949 * 5.15600 * 16 14 13 19 19 H 1.48503 * 109.47348 * 94.75238 * 18 16 14 20 20 H 1.48506 * 109.46930 * 214.75121 * 18 16 14 21 21 H 1.48498 * 109.47381 * 334.75091 * 18 16 14 22 22 C 1.46503 * 120.00048 * 184.76771 * 12 10 9 23 23 C 1.50694 * 109.47567 * 89.99530 * 22 12 10 24 24 C 1.38675 * 120.42091 * 269.72434 * 23 22 12 25 25 C 1.38628 * 118.42288 * 179.78128 * 24 23 22 26 26 C 1.38233 * 119.15865 * 0.51052 * 25 24 23 27 27 N 1.31852 * 120.76267 * 359.72773 * 26 25 24 28 28 C 1.31891 * 121.72872 * 359.97438 * 27 26 25 29 29 C 1.39005 * 119.46544 * 0.29901 * 9 7 6 30 30 C 1.40531 * 117.96418 * 359.46798 * 29 9 7 31 31 C 1.36145 * 119.58080 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47239 * 269.97466 * 1 2 3 33 33 H 1.08999 * 109.47271 * 29.97569 * 1 2 3 34 34 H 1.09004 * 109.47616 * 149.97661 * 1 2 3 35 35 H 1.08006 * 119.45481 * 0.02562 * 3 2 1 36 36 H 1.08004 * 120.09306 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.47000 * 274.15753 * 8 7 6 38 38 H 1.08993 * 109.47132 * 34.15781 * 8 7 6 39 39 H 1.09000 * 109.46743 * 154.15461 * 8 7 6 40 40 H 1.08991 * 109.47543 * 215.77389 * 13 12 10 41 41 H 1.09000 * 109.47039 * 335.77545 * 13 12 10 42 42 H 0.97000 * 119.99797 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47003 * 209.99706 * 22 12 10 44 44 H 1.09000 * 109.46984 * 329.99240 * 22 12 10 45 45 H 1.08004 * 120.78604 * 0.02562 * 24 23 22 46 46 H 1.07998 * 120.41890 * 180.21700 * 25 24 23 47 47 H 1.08002 * 119.61799 * 179.74750 * 26 25 24 48 48 H 1.08001 * 119.61873 * 180.02562 * 28 27 26 49 49 H 1.07997 * 121.01536 * 179.69946 * 29 9 7 50 50 H 1.07999 * 120.19104 * 359.97385 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2117 0.0000 4 6 3.5557 1.2474 0.0005 5 6 4.2863 0.0469 0.0005 6 7 5.6243 0.0586 0.0015 7 6 6.3218 -1.0479 0.0021 8 6 7.8267 -0.9693 0.0038 9 6 5.7000 -2.3090 0.0021 10 6 6.5153 -3.5413 0.0033 11 8 7.3686 -3.7064 -0.8466 12 7 6.3129 -4.4824 0.9466 13 6 5.2168 -4.3330 1.9070 14 6 4.0141 -5.0995 1.4199 15 1 4.0353 -5.5796 0.4527 16 6 2.8870 -5.1878 2.2090 17 7 1.8765 -5.9394 1.8302 18 14 2.7953 -4.2400 3.8160 19 1 2.1081 -2.9435 3.5876 20 1 2.0360 -5.0333 4.8159 21 1 4.1687 -3.9898 4.3223 22 6 7.1891 -5.6547 1.0117 23 6 8.3576 -5.3590 1.9162 24 6 9.5244 -4.8148 1.4009 25 6 10.5718 -4.5551 2.2711 26 6 10.4233 -4.8550 3.6123 27 7 9.3008 -5.3766 4.0665 28 6 8.2818 -5.6314 3.2688 29 6 4.3122 -2.3871 -0.0047 30 6 3.5845 -1.1849 0.0001 31 6 2.1790 -1.1840 -0.0005 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8898 -0.5142 35 1 1.6393 2.1379 0.0004 36 1 4.0726 2.1958 0.0009 37 1 8.1868 -0.8757 -1.0207 38 1 8.1445 -0.1014 0.5814 39 1 8.2372 -1.8741 0.4521 40 1 5.5275 -4.7222 2.8765 41 1 4.9603 -3.2781 2.0043 42 1 1.0833 -6.0013 2.3852 43 1 6.6309 -6.5041 1.4053 44 1 7.5541 -5.8914 0.0123 45 1 9.6135 -4.5949 0.3472 46 1 11.4939 -4.1283 1.9049 47 1 11.2361 -4.6595 4.2961 48 1 7.3779 -6.0586 3.6774 49 1 3.8086 -3.3425 -0.0097 50 1 1.6353 -2.1171 -0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058008569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = 52.004354 kcal Electronic energy + Delta-G solvation = -34539.903311 eV Core-core repulsion = 30303.712196 eV Total energy + Delta-G solvation = -4236.191115 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.87255 -40.11537 -39.07336 -37.24042 -35.53840 -33.62399 -32.86041 -32.63896 -32.27459 -31.49470 -30.32968 -28.97154 -28.30274 -26.37890 -25.73860 -24.16496 -23.48018 -22.59530 -22.12554 -21.84635 -21.46921 -19.36245 -17.85599 -17.36019 -16.89371 -16.73647 -16.34473 -16.06350 -15.84121 -15.30638 -15.11342 -14.63875 -14.35566 -14.22711 -14.17097 -14.01624 -13.58382 -13.51827 -13.31131 -13.10356 -13.05182 -12.84779 -12.65915 -12.55575 -12.48233 -12.18622 -12.09065 -11.95185 -11.81935 -11.53199 -11.34985 -11.24306 -11.11496 -10.89201 -10.77858 -10.41598 -10.12256 -9.87706 -9.73951 -9.63950 -9.35226 -9.17284 -8.88350 -8.83694 -8.37279 -8.00682 -7.90419 -6.40338 -4.43102 0.58243 0.89885 1.18081 1.40635 2.19888 2.81562 3.07662 3.16392 3.20479 3.27144 3.57560 4.04374 4.12813 4.28916 4.34996 4.55724 4.78002 4.83154 4.87907 4.89760 4.93821 5.02779 5.04632 5.10514 5.16004 5.20827 5.29484 5.37988 5.50550 5.56999 5.60577 5.64623 5.77095 5.80333 5.86553 5.89953 5.95023 6.00901 6.08121 6.09335 6.19012 6.22389 6.24175 6.25442 6.41093 6.47045 6.52745 6.54798 6.67890 6.81752 6.84131 7.00945 7.06595 7.26491 7.85529 8.07512 8.13270 8.19689 8.57745 8.66731 9.19043 10.70459 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.003869 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.397774 B = 7236.044235 C = 9258.533443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.104 4.104 5 C 0.140 3.860 6 N -0.491 5.491 7 C 0.199 3.801 8 C -0.100 4.100 9 C -0.185 4.185 10 C 0.572 3.428 11 O -0.553 6.553 12 N -0.577 5.577 13 C 0.203 3.797 14 C -0.550 4.550 15 H 0.083 0.917 16 C 0.087 3.913 17 N -0.879 5.879 18 Si 0.857 3.143 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.161 3.839 23 C -0.147 4.147 24 C -0.057 4.057 25 C -0.179 4.179 26 C 0.091 3.909 27 N -0.489 5.489 28 C 0.113 3.887 29 C 0.004 3.996 30 C -0.113 4.113 31 C -0.073 4.073 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.269 0.731 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.131 0.869 47 H 0.151 0.849 48 H 0.157 0.843 49 H 0.179 0.821 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 8.569 -1.278 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.111 4.111 4 C -0.123 4.123 5 C 0.018 3.982 6 N -0.200 5.200 7 C 0.046 3.954 8 C -0.158 4.158 9 C -0.190 4.190 10 C 0.359 3.641 11 O -0.433 6.433 12 N -0.306 5.306 13 C 0.082 3.918 14 C -0.588 4.588 15 H 0.101 0.899 16 C -0.119 4.119 17 N -0.515 5.515 18 Si 0.683 3.317 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.186 1.186 22 C 0.037 3.963 23 C -0.150 4.150 24 C -0.084 4.084 25 C -0.199 4.199 26 C -0.066 4.066 27 N -0.197 5.197 28 C -0.044 4.044 29 C -0.022 4.022 30 C -0.115 4.115 31 C -0.092 4.092 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.168 0.832 48 H 0.174 0.826 49 H 0.196 0.804 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.478 9.067 -0.750 11.168 hybrid contribution -0.699 -0.146 0.170 0.734 sum 5.778 8.920 -0.581 10.644 Atomic orbital electron populations 1.20794 0.90935 1.02767 1.02420 1.19623 0.96436 0.92911 1.01457 1.20771 0.93900 0.97573 0.98824 1.20678 0.93441 0.96700 1.01492 1.18917 0.89363 0.92744 0.97148 1.67752 1.06452 1.29800 1.16001 1.21321 0.96791 0.86761 0.90568 1.20747 0.88476 1.03035 1.03508 1.20667 0.94736 0.94684 1.08915 1.17961 0.82380 0.82656 0.81057 1.90690 1.35665 1.79225 1.37764 1.47874 1.30566 1.20347 1.31803 1.20004 0.85368 0.97867 0.88559 1.21295 0.96704 1.34659 1.06096 0.89861 1.24789 0.95498 0.94322 0.97258 1.69885 1.06215 1.36893 1.38517 0.87117 0.79390 0.80850 0.84312 1.19570 1.20519 1.18594 1.20192 0.88123 0.88871 0.99113 1.21427 0.96775 1.00479 0.96357 1.21678 0.92027 0.93811 1.00839 1.22123 1.00149 1.02632 0.95008 1.22719 0.95265 0.94819 0.93810 1.67707 1.00559 1.12046 1.39431 1.22808 0.96694 0.95283 0.89643 1.22893 0.92681 1.00019 0.86590 1.18843 0.94864 0.93701 1.04139 1.21071 0.92347 0.98662 0.97074 0.91185 0.91674 0.91253 0.85639 0.85022 0.89735 0.90750 0.90724 0.94677 0.95039 0.92097 0.88345 0.89153 0.84343 0.85096 0.83217 0.82599 0.80403 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.98 36.00 0.36 -0.84 16 2 C -0.10 -1.43 5.84 -104.97 -0.61 -2.04 16 3 C -0.09 -1.15 9.58 -39.93 -0.38 -1.53 16 4 C -0.10 -1.50 9.97 -39.48 -0.39 -1.90 16 5 C 0.14 2.44 6.61 -84.79 -0.56 1.88 16 6 N -0.49 -8.81 10.20 -6.93 -0.07 -8.88 16 7 C 0.20 3.57 6.82 -82.14 -0.56 3.01 16 8 C -0.10 -1.51 9.39 36.01 0.34 -1.17 16 9 C -0.18 -3.55 4.74 -104.83 -0.50 -4.04 16 10 C 0.57 11.08 6.07 -12.37 -0.08 11.01 16 11 O -0.55 -11.06 15.37 5.31 0.08 -10.98 16 12 N -0.58 -10.94 2.44 -177.59 -0.43 -11.37 16 13 C 0.20 4.24 3.70 -5.19 -0.02 4.22 16 14 C -0.55 -13.01 7.61 -34.44 -0.26 -13.27 16 15 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 16 C 0.09 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.88 -23.37 13.96 55.43 0.77 -22.60 16 18 Si 0.86 19.01 27.58 -169.99 -4.69 14.32 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.26 -5.65 6.40 56.52 0.36 -5.29 16 22 C 0.16 2.64 5.61 -5.19 -0.03 2.61 16 23 C -0.15 -2.24 5.48 -104.48 -0.57 -2.81 16 24 C -0.06 -0.79 9.86 -39.28 -0.39 -1.17 16 25 C -0.18 -2.14 10.11 -39.44 -0.40 -2.54 16 26 C 0.09 1.15 11.18 -17.54 -0.20 0.96 16 27 N -0.49 -7.49 10.36 -13.25 -0.14 -7.62 16 28 C 0.11 1.75 10.86 -17.55 -0.19 1.56 16 29 C 0.00 0.07 7.55 -38.43 -0.29 -0.22 16 30 C -0.11 -2.05 5.74 -106.81 -0.61 -2.67 16 31 C -0.07 -1.19 9.38 -39.46 -0.37 -1.56 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 40 H 0.04 0.73 7.06 -51.93 -0.37 0.37 16 41 H 0.03 0.68 5.19 -51.93 -0.27 0.41 16 42 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.10 1.59 8.02 -51.93 -0.42 1.17 16 44 H 0.09 1.46 7.31 -51.93 -0.38 1.08 16 45 H 0.14 1.88 7.95 -52.48 -0.42 1.46 16 46 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 48 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 49 H 0.18 3.71 5.48 -52.49 -0.29 3.42 16 50 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 414.94 15.07 6.25 6.25 Total: -1.00 -28.90 414.94 -10.75 -39.65 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.72 Total: 9.71 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -5.81 Total: -8.47 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.13 Total: -50.48 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.69 Total: 14.32 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -28.90 -10.75 -39.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058008569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.658 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds