Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39336 * 119.58754 * 2 1 4 4 C 1.36130 * 121.09181 * 179.97438 * 3 2 1 5 5 C 1.40527 * 119.81742 * 0.02562 * 4 3 2 6 6 N 1.33813 * 120.82048 * 180.02562 * 5 4 3 7 7 C 1.30802 * 121.72071 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.23274 * 180.02562 * 7 6 5 9 9 C 1.40605 * 121.53344 * 359.97438 * 7 6 5 10 10 C 1.47756 * 120.26493 * 180.02562 * 9 7 6 11 11 O 1.21562 * 120.00217 * 306.09449 * 10 9 7 12 12 N 1.34779 * 119.99976 * 126.09899 * 10 9 7 13 13 C 1.46495 * 120.00119 * 4.75913 * 12 10 9 14 14 C 1.50707 * 109.46962 * 95.77151 * 13 12 10 15 15 H 1.08002 * 119.99723 * 355.23934 * 14 13 12 16 16 C 1.37876 * 120.00044 * 175.23994 * 14 13 12 17 17 N 1.31508 * 119.99719 * 185.15539 * 16 14 13 18 18 Si 1.86795 * 119.99949 * 5.15600 * 16 14 13 19 19 H 1.48503 * 109.47348 * 94.75238 * 18 16 14 20 20 H 1.48506 * 109.46930 * 214.75121 * 18 16 14 21 21 H 1.48498 * 109.47381 * 334.75091 * 18 16 14 22 22 C 1.46503 * 120.00048 * 184.76771 * 12 10 9 23 23 C 1.50694 * 109.47567 * 89.99530 * 22 12 10 24 24 C 1.38675 * 120.42091 * 269.72434 * 23 22 12 25 25 C 1.38628 * 118.42288 * 179.78128 * 24 23 22 26 26 C 1.38233 * 119.15865 * 0.51052 * 25 24 23 27 27 N 1.31852 * 120.76267 * 359.72773 * 26 25 24 28 28 C 1.31891 * 121.72872 * 359.97438 * 27 26 25 29 29 C 1.39005 * 119.46544 * 0.29901 * 9 7 6 30 30 C 1.40531 * 117.96418 * 359.46798 * 29 9 7 31 31 C 1.36145 * 119.58080 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47239 * 269.97466 * 1 2 3 33 33 H 1.08999 * 109.47271 * 29.97569 * 1 2 3 34 34 H 1.09004 * 109.47616 * 149.97661 * 1 2 3 35 35 H 1.08006 * 119.45481 * 0.02562 * 3 2 1 36 36 H 1.08004 * 120.09306 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.47000 * 274.15753 * 8 7 6 38 38 H 1.08993 * 109.47132 * 34.15781 * 8 7 6 39 39 H 1.09000 * 109.46743 * 154.15461 * 8 7 6 40 40 H 1.08991 * 109.47543 * 215.77389 * 13 12 10 41 41 H 1.09000 * 109.47039 * 335.77545 * 13 12 10 42 42 H 0.97000 * 119.99797 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47003 * 209.99706 * 22 12 10 44 44 H 1.09000 * 109.46984 * 329.99240 * 22 12 10 45 45 H 1.08004 * 120.78604 * 0.02562 * 24 23 22 46 46 H 1.07998 * 120.41890 * 180.21700 * 25 24 23 47 47 H 1.08002 * 119.61799 * 179.74750 * 26 25 24 48 48 H 1.08001 * 119.61873 * 180.02562 * 28 27 26 49 49 H 1.07997 * 121.01536 * 179.69946 * 29 9 7 50 50 H 1.07999 * 120.19104 * 359.97385 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2117 0.0000 4 6 3.5557 1.2474 0.0005 5 6 4.2863 0.0469 0.0005 6 7 5.6243 0.0586 0.0015 7 6 6.3218 -1.0479 0.0021 8 6 7.8267 -0.9693 0.0038 9 6 5.7000 -2.3090 0.0021 10 6 6.5153 -3.5413 0.0033 11 8 7.3686 -3.7064 -0.8466 12 7 6.3129 -4.4824 0.9466 13 6 5.2168 -4.3330 1.9070 14 6 4.0141 -5.0995 1.4199 15 1 4.0353 -5.5796 0.4527 16 6 2.8870 -5.1878 2.2090 17 7 1.8765 -5.9394 1.8302 18 14 2.7953 -4.2400 3.8160 19 1 2.1081 -2.9435 3.5876 20 1 2.0360 -5.0333 4.8159 21 1 4.1687 -3.9898 4.3223 22 6 7.1891 -5.6547 1.0117 23 6 8.3576 -5.3590 1.9162 24 6 9.5244 -4.8148 1.4009 25 6 10.5718 -4.5551 2.2711 26 6 10.4233 -4.8550 3.6123 27 7 9.3008 -5.3766 4.0665 28 6 8.2818 -5.6314 3.2688 29 6 4.3122 -2.3871 -0.0047 30 6 3.5845 -1.1849 0.0001 31 6 2.1790 -1.1840 -0.0005 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8898 -0.5142 35 1 1.6393 2.1379 0.0004 36 1 4.0726 2.1958 0.0009 37 1 8.1868 -0.8757 -1.0207 38 1 8.1445 -0.1014 0.5814 39 1 8.2372 -1.8741 0.4521 40 1 5.5275 -4.7222 2.8765 41 1 4.9603 -3.2781 2.0043 42 1 1.0833 -6.0013 2.3852 43 1 6.6309 -6.5041 1.4053 44 1 7.5541 -5.8914 0.0123 45 1 9.6135 -4.5949 0.3472 46 1 11.4939 -4.1283 1.9049 47 1 11.2361 -4.6595 4.2961 48 1 7.3779 -6.0586 3.6774 49 1 3.8086 -3.3425 -0.0097 50 1 1.6353 -2.1171 -0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058008569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = 37.946431 kcal Electronic energy + Delta-G solvation = -34540.512908 eV Core-core repulsion = 30303.712196 eV Total energy + Delta-G solvation = -4236.800712 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.21940 -41.28281 -40.42177 -38.48026 -37.10814 -35.05490 -34.52115 -33.82552 -33.57216 -32.63558 -31.52636 -30.15786 -30.04417 -27.70120 -26.82963 -25.52404 -24.73576 -24.18913 -23.35147 -23.06520 -22.69774 -20.77112 -19.29205 -19.07627 -18.24857 -18.01275 -17.68487 -17.35787 -17.07194 -16.68643 -16.42428 -16.04457 -15.84239 -15.50456 -15.40143 -15.26878 -14.81694 -14.72287 -14.55023 -14.45512 -14.34833 -14.26223 -13.97971 -13.85471 -13.69682 -13.53394 -13.41839 -13.14144 -13.08426 -12.88076 -12.71073 -12.61814 -12.52416 -12.29711 -12.12434 -11.93995 -11.79941 -11.48045 -11.22082 -10.85648 -10.76861 -10.52262 -10.47422 -9.99046 -9.67378 -9.55582 -9.14251 -8.37377 -6.42145 -0.73061 -0.38863 0.09784 0.32430 0.88719 1.28001 1.34214 1.39069 1.45396 1.89322 2.14968 2.24764 2.91296 2.95042 2.99558 3.10552 3.39587 3.52115 3.60539 3.67186 3.78890 3.84290 3.85772 3.96896 4.08717 4.09528 4.14349 4.21112 4.34236 4.45583 4.55645 4.57295 4.62003 4.65506 4.67545 4.72993 4.76458 4.79593 4.82847 4.85669 4.87319 4.96714 4.99919 5.08678 5.19297 5.24269 5.29002 5.33363 5.36186 5.49590 5.53365 5.55309 5.76729 5.86402 6.08647 6.42461 6.61816 6.78237 6.99945 7.05297 7.23407 8.77105 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.003869 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.397774 B = 7236.044235 C = 9258.533443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.076 4.076 4 C -0.107 4.107 5 C 0.119 3.881 6 N -0.490 5.490 7 C 0.185 3.815 8 C -0.092 4.092 9 C -0.201 4.201 10 C 0.572 3.428 11 O -0.563 6.563 12 N -0.579 5.579 13 C 0.218 3.782 14 C -0.535 4.535 15 H 0.047 0.953 16 C 0.046 3.954 17 N -0.922 5.922 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.251 1.251 22 C 0.161 3.839 23 C -0.157 4.157 24 C -0.063 4.063 25 C -0.166 4.166 26 C 0.091 3.909 27 N -0.510 5.510 28 C 0.098 3.902 29 C -0.011 4.011 30 C -0.128 4.128 31 C -0.106 4.106 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.028 0.972 42 H 0.270 0.730 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.168 0.832 47 H 0.185 0.815 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 11.941 -0.345 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.002 4.002 6 N -0.199 5.199 7 C 0.032 3.968 8 C -0.149 4.149 9 C -0.206 4.206 10 C 0.360 3.640 11 O -0.444 6.444 12 N -0.308 5.308 13 C 0.096 3.904 14 C -0.573 4.573 15 H 0.065 0.935 16 C -0.156 4.156 17 N -0.560 5.560 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.174 1.174 22 C 0.039 3.961 23 C -0.160 4.160 24 C -0.090 4.090 25 C -0.185 4.185 26 C -0.066 4.066 27 N -0.219 5.219 28 C -0.058 4.058 29 C -0.037 4.037 30 C -0.130 4.130 31 C -0.124 4.124 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.189 0.811 36 H 0.174 0.826 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.157 0.843 46 H 0.186 0.814 47 H 0.202 0.798 48 H 0.168 0.832 49 H 0.170 0.830 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.466 12.429 0.179 14.500 hybrid contribution -1.038 -1.138 -0.220 1.556 sum 6.428 11.291 -0.040 12.993 Atomic orbital electron populations 1.20899 0.88509 1.04216 1.03353 1.20080 0.98225 0.92335 0.98321 1.21262 0.93457 0.98732 0.96129 1.21030 0.94224 0.96374 1.00894 1.19368 0.89497 0.93601 0.97713 1.67811 1.06773 1.29506 1.15839 1.21684 0.98131 0.86206 0.90794 1.20737 0.86486 1.03444 1.04278 1.20760 0.94601 0.95249 1.09967 1.18062 0.82254 0.82840 0.80802 1.90662 1.36188 1.79566 1.37947 1.47868 1.30416 1.21090 1.31412 1.19693 0.84838 0.96953 0.88920 1.21283 0.97885 1.33707 1.04395 0.93518 1.25369 0.95135 0.94994 1.00068 1.69992 1.07030 1.38909 1.40053 0.86284 0.79830 0.79626 0.80960 1.19355 1.20322 1.17437 1.20227 0.88441 0.87872 0.99578 1.21214 0.96798 1.01990 0.96020 1.21789 0.92156 0.93738 1.01289 1.22479 1.00651 1.01037 0.94342 1.23353 0.95101 0.93310 0.94879 1.67723 1.01363 1.12992 1.39822 1.22750 0.97092 0.96174 0.89796 1.22647 0.93083 0.99708 0.88274 1.18986 0.95707 0.93565 1.04729 1.21100 0.91852 0.99582 0.99907 0.90306 0.88583 0.91559 0.81059 0.82586 0.88890 0.88857 0.91487 0.94239 0.95377 0.92011 0.88847 0.89221 0.84340 0.81436 0.79772 0.83204 0.83048 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.98 71.23 0.71 -1.38 16 2 C -0.09 -2.27 5.84 -20.09 -0.12 -2.39 16 3 C -0.08 -1.64 9.58 22.04 0.21 -1.43 16 4 C -0.11 -2.77 9.97 22.34 0.22 -2.55 16 5 C 0.12 4.09 6.61 40.27 0.27 4.36 16 6 N -0.49 -17.26 10.20 -175.84 -1.79 -19.05 16 7 C 0.19 6.67 6.82 43.29 0.30 6.96 16 8 C -0.09 -2.69 9.39 71.24 0.67 -2.03 16 9 C -0.20 -8.00 4.74 -20.00 -0.09 -8.09 16 10 C 0.57 23.10 6.07 86.76 0.53 23.62 16 11 O -0.56 -23.13 15.37 -3.91 -0.06 -23.19 16 12 N -0.58 -23.01 2.44 -834.03 -2.04 -25.04 16 13 C 0.22 9.47 3.70 85.64 0.32 9.79 16 14 C -0.53 -26.84 7.61 25.60 0.19 -26.64 16 15 H 0.05 2.65 8.06 -2.91 -0.02 2.63 16 16 C 0.05 2.37 5.47 84.66 0.46 2.84 16 17 N -0.92 -51.27 13.96 21.45 0.30 -50.98 16 18 Si 0.91 39.92 27.58 68.60 1.89 41.81 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.25 -10.48 6.40 99.48 0.64 -9.85 16 22 C 0.16 5.57 5.61 85.63 0.48 6.06 16 23 C -0.16 -4.82 5.48 -19.77 -0.11 -4.93 16 24 C -0.06 -1.68 9.86 22.47 0.22 -1.46 16 25 C -0.17 -3.50 10.11 22.36 0.23 -3.27 16 26 C 0.09 2.06 11.18 84.69 0.95 3.01 16 27 N -0.51 -15.06 10.36 -195.83 -2.03 -17.09 16 28 C 0.10 3.07 10.86 84.67 0.92 3.99 16 29 C -0.01 -0.46 7.55 23.01 0.17 -0.29 16 30 C -0.13 -4.77 5.74 -21.28 -0.12 -4.89 16 31 C -0.11 -3.51 9.38 22.35 0.21 -3.30 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.07 1.29 8.07 -2.38 -0.02 1.27 16 35 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.04 6.54 -2.39 -0.02 2.03 16 40 H 0.04 1.69 7.06 -2.39 -0.02 1.67 16 41 H 0.03 1.27 5.19 -2.39 -0.01 1.25 16 42 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.09 3.24 8.02 -2.39 -0.02 3.22 16 44 H 0.09 3.06 7.31 -2.39 -0.02 3.04 16 45 H 0.14 3.67 7.95 -2.91 -0.02 3.65 16 46 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 47 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 48 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 49 H 0.15 6.94 5.48 -2.91 -0.02 6.92 16 50 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -65.74 414.94 3.78 -61.96 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.90 Total: 33.62 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.61 Total: -2.04 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -5.56 Total: -112.16 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.89 Total: 41.81 kcal Total: -65.74 3.78 -61.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058008569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.905 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds