Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.33288 * 119.99885 * 2 1 4 4 H 1.08003 * 120.00219 * 170.65821 * 3 2 1 5 5 C 1.46783 * 120.00039 * 350.65416 * 3 2 1 6 6 N 1.29312 * 119.99851 * 5.51202 * 5 3 2 7 7 Si 1.86797 * 119.99918 * 185.50186 * 5 3 2 8 8 H 1.48501 * 109.47501 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47135 * 120.00469 * 7 5 3 10 10 H 1.48500 * 109.47324 * 240.00411 * 7 5 3 11 11 C 1.34775 * 120.00320 * 179.97438 * 2 1 3 12 12 O 1.21543 * 119.99664 * 4.40991 * 11 2 1 13 13 C 1.47190 * 120.00326 * 184.40879 * 11 2 1 14 14 C 1.39857 * 120.22640 * 308.10841 * 13 11 2 15 15 C 1.37679 * 119.92446 * 180.02562 * 14 13 11 16 16 N 1.48024 * 119.80356 * 179.97438 * 15 14 13 17 17 O 1.31701 * 119.99495 * 180.02562 * 16 15 14 18 18 O 1.31699 * 120.00136 * 0.02562 * 16 15 14 19 19 C 1.38703 * 120.38810 * 359.97438 * 15 14 13 20 20 C 1.37885 * 120.46149 * 0.25469 * 19 15 14 21 21 C 1.39059 * 120.06289 * 359.49437 * 20 19 15 22 22 S 1.76206 * 120.19213 * 180.22617 * 21 20 19 23 23 C 1.76192 * 102.99941 * 3.66588 * 22 21 20 24 24 C 1.38902 * 120.08694 * 102.47247 * 23 22 21 25 25 C 1.38118 * 119.94720 * 179.97438 * 24 23 22 26 26 C 1.38300 * 120.11520 * 0.02562 * 25 24 23 27 27 C 1.38296 * 120.17566 * 359.97438 * 26 25 24 28 28 C 1.38267 * 120.04952 * 359.70468 * 27 26 25 29 29 F 1.35104 * 120.05884 * 180.27013 * 28 27 26 30 30 H 1.08998 * 109.47289 * 184.28133 * 1 2 3 31 31 H 1.08996 * 109.47604 * 304.28531 * 1 2 3 32 32 H 1.09006 * 109.46847 * 64.28939 * 1 2 3 33 33 H 0.97000 * 119.99767 * 180.02562 * 6 5 3 34 34 H 1.08007 * 120.03751 * 0.04137 * 14 13 11 35 35 H 1.08002 * 119.77060 * 179.97438 * 19 15 14 36 36 H 1.07997 * 119.97133 * 179.74420 * 20 19 15 37 37 H 1.07993 * 120.02406 * 359.95324 * 24 23 22 38 38 H 1.08000 * 119.94389 * 179.97438 * 25 24 23 39 39 H 1.08009 * 119.91221 * 179.97438 * 26 25 24 40 40 H 1.07996 * 119.97518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1314 1.1543 0.0000 4 1 3.2006 1.1606 0.1518 5 6 1.4120 2.4171 -0.2064 6 7 0.1211 2.4209 -0.2817 7 14 2.3614 4.0184 -0.3601 8 1 3.8161 3.7450 -0.2405 9 1 2.0811 4.6352 -1.6815 10 1 1.9418 4.9482 0.7191 11 6 2.1389 -1.1671 0.0005 12 8 1.5339 -2.2182 -0.0799 13 6 3.6075 -1.1690 0.0985 14 6 4.3724 -0.3885 -0.7743 15 6 5.7457 -0.3953 -0.6775 16 7 6.5526 0.4313 -1.6031 17 8 7.8666 0.4272 -1.5141 18 8 5.9566 1.1708 -2.5154 19 6 6.3776 -1.1722 0.2822 20 6 5.6394 -1.9513 1.1478 21 6 4.2509 -1.9548 1.0703 22 16 3.3040 -2.9446 2.1786 23 6 4.5302 -3.6387 3.2365 24 6 4.7222 -3.1232 4.5120 25 6 5.6838 -3.6698 5.3390 26 6 6.4564 -4.7293 4.8993 27 6 6.2694 -5.2464 3.6303 28 6 5.3042 -4.7088 2.7989 29 9 5.1177 -5.2174 1.5612 30 1 -0.3634 -1.0248 0.0767 31 1 -0.3634 0.5789 0.8490 32 1 -0.3633 0.4459 -0.9260 33 1 -0.3542 3.2553 -0.4185 34 1 3.8862 0.2191 -1.5233 35 1 7.4555 -1.1704 0.3490 36 1 6.1397 -2.5564 1.8893 37 1 4.1202 -2.2954 4.8565 38 1 5.8333 -3.2687 6.3306 39 1 7.2078 -5.1540 5.5486 40 1 6.8748 -6.0735 3.2901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058150445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = 32.890835 kcal Electronic energy + Delta-G solvation = -31527.028626 eV Core-core repulsion = 26932.607482 eV Total energy + Delta-G solvation = -4594.421144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.073 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -49.15842 -40.11085 -39.17369 -38.65120 -37.43159 -35.09549 -34.08537 -32.27598 -31.92733 -31.47963 -31.23034 -30.70453 -26.77354 -26.37063 -25.01815 -23.70082 -23.01092 -22.82313 -22.18355 -19.83278 -18.80102 -18.47762 -17.78663 -17.59017 -16.88611 -16.65883 -16.54031 -16.27728 -15.88987 -15.62963 -15.33726 -14.85582 -14.65281 -14.61305 -14.31306 -14.03965 -13.76060 -13.52976 -13.16550 -12.99164 -12.82298 -12.75247 -12.20706 -12.05276 -11.82247 -11.68505 -11.56280 -11.21487 -11.06968 -10.97933 -10.81083 -10.66267 -10.60397 -10.52626 -10.36608 -10.10166 -9.45580 -9.42157 -9.11634 -9.06624 -8.59690 -8.44900 -7.45728 -6.84801 -3.98752 -0.41852 0.38973 0.79748 1.04770 1.25731 1.38508 1.55050 2.37082 2.86122 3.03168 3.06899 3.17379 3.21203 3.74429 3.80177 3.85167 4.34418 4.34799 4.51143 4.54730 4.65058 4.78830 4.83902 4.90240 5.07149 5.17546 5.23411 5.42324 5.58617 5.62432 5.64814 5.77860 5.85912 5.93176 5.93308 6.11205 6.20572 6.39285 6.52916 6.67271 6.80040 6.94069 7.12073 7.16485 7.29955 7.99709 8.56861 9.20500 9.67783 10.06733 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003738 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.166904 B = 7489.427924 C = 9101.995642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.384 5.384 3 C -0.372 4.372 4 H 0.108 0.892 5 C 0.054 3.946 6 N -0.817 5.817 7 Si 0.925 3.075 8 H -0.259 1.259 9 H -0.269 1.269 10 H -0.274 1.274 11 C 0.436 3.564 12 O -0.600 6.600 13 C -0.052 4.052 14 C 0.006 3.994 15 C -0.024 4.024 16 N -0.006 5.006 17 O -0.198 6.198 18 O -0.175 6.175 19 C -0.046 4.046 20 C -0.132 4.132 21 C -0.043 4.043 22 S 0.112 5.888 23 C -0.211 4.211 24 C -0.034 4.034 25 C -0.141 4.141 26 C -0.064 4.064 27 C -0.165 4.165 28 C 0.146 3.854 29 F -0.120 7.120 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.283 0.717 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -8.780 11.286 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.094 5.094 3 C -0.501 4.501 4 H 0.126 0.874 5 C -0.161 4.161 6 N -0.449 5.449 7 Si 0.749 3.251 8 H -0.183 1.183 9 H -0.194 1.194 10 H -0.200 1.200 11 C 0.227 3.773 12 O -0.490 6.490 13 C -0.063 4.063 14 C -0.016 4.016 15 C -0.114 4.114 16 N 0.468 4.532 17 O -0.386 6.386 18 O -0.369 6.369 19 C -0.068 4.068 20 C -0.157 4.157 21 C -0.159 4.159 22 S 0.366 5.634 23 C -0.323 4.323 24 C -0.054 4.054 25 C -0.161 4.161 26 C -0.082 4.082 27 C -0.186 4.186 28 C 0.124 3.876 29 F -0.098 7.098 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.188 0.812 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.948 -9.727 11.709 16.733 hybrid contribution 2.139 1.361 -0.627 2.612 sum 9.087 -8.366 11.082 16.595 Atomic orbital electron populations 1.21770 0.78878 0.98986 1.03697 1.42681 1.06810 1.04814 1.55090 1.20840 0.93689 0.83146 1.52449 0.87447 1.26901 0.95043 1.00178 0.94020 1.69188 1.08150 1.29510 1.38019 0.85851 0.80611 0.79763 0.78848 1.18261 1.19427 1.19951 1.17051 0.85011 0.84648 0.90613 1.90660 1.67648 1.30572 1.60151 1.19604 0.95946 0.95924 0.94834 1.21410 0.89841 0.93300 0.97075 1.20158 0.90680 1.02868 0.97683 1.50420 1.02958 0.99240 1.00547 1.96210 0.89788 1.73330 1.79275 1.96287 1.73492 1.38974 1.28106 1.20743 1.01433 0.92776 0.91875 1.20896 0.91608 1.01887 1.01308 1.22679 0.96502 0.98668 0.98090 1.85467 1.02325 1.49863 1.25710 1.22671 1.06232 1.01985 1.01371 1.21532 0.95185 0.97513 0.91192 1.21316 0.96645 0.97441 1.00655 1.21233 0.97767 0.94669 0.94539 1.21198 0.99526 1.02863 0.94970 1.17870 0.95780 0.93005 0.80969 1.91606 1.93992 1.85462 1.38736 0.93423 0.91448 0.90774 0.90457 0.81196 0.83169 0.84523 0.83779 0.84573 0.84492 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 8.85 59.84 0.53 3.04 16 2 N -0.38 -9.22 2.93 -121.95 -0.36 -9.58 16 3 C -0.37 -8.83 8.57 -13.47 -0.12 -8.95 16 4 H 0.11 2.49 5.12 -52.48 -0.27 2.22 16 5 C 0.05 1.25 5.63 -15.16 -0.09 1.16 16 6 N -0.82 -18.84 9.58 56.00 0.54 -18.30 16 7 Si 0.93 18.32 29.65 -169.99 -5.04 13.28 16 8 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 9 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 C 0.44 10.31 6.56 -12.63 -0.08 10.23 16 12 O -0.60 -15.34 15.24 5.33 0.08 -15.26 16 13 C -0.05 -1.08 5.00 -104.78 -0.52 -1.60 16 14 C 0.01 0.13 7.01 -39.18 -0.27 -0.15 16 15 C -0.02 -0.43 6.88 -79.98 -0.55 -0.98 16 16 N -0.01 -0.12 4.98 33.95 0.17 0.05 16 17 O -0.20 -3.76 19.13 -31.57 -0.60 -4.37 16 18 O -0.18 -3.66 19.13 -31.57 -0.60 -4.26 16 19 C -0.05 -0.71 9.56 -39.54 -0.38 -1.09 16 20 C -0.13 -2.02 9.27 -39.41 -0.37 -2.38 16 21 C -0.04 -0.78 6.16 -38.40 -0.24 -1.02 16 22 S 0.11 1.89 19.65 -107.50 -2.11 -0.22 16 23 C -0.21 -2.69 4.19 -39.00 -0.16 -2.85 16 24 C -0.03 -0.34 9.79 -39.38 -0.39 -0.72 16 25 C -0.14 -1.04 10.04 -39.60 -0.40 -1.44 16 26 C -0.06 -0.44 10.04 -39.54 -0.40 -0.83 16 27 C -0.17 -1.44 10.02 -39.55 -0.40 -1.84 16 28 C 0.15 1.76 6.15 -39.24 -0.24 1.52 16 29 F -0.12 -1.70 16.76 2.25 0.04 -1.67 16 30 H 0.05 1.08 6.93 -51.93 -0.36 0.72 16 31 H 0.07 1.55 7.24 -51.93 -0.38 1.18 16 32 H 0.07 1.74 6.92 -51.93 -0.36 1.38 16 33 H 0.28 6.03 8.26 -40.82 -0.34 5.69 16 34 H 0.17 3.51 6.65 -52.48 -0.35 3.16 16 35 H 0.15 1.96 7.56 -52.49 -0.40 1.56 16 36 H 0.14 1.77 5.64 -52.49 -0.30 1.48 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -28.63 368.65 -9.63 -38.26 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.23 Total: 4.42 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -4.06 Total: -7.91 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.35 Total: -27.83 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.13 Total: -23.89 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.11 Total: -0.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.63 -9.63 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058150445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.150 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds