Wall clock time and date at job start Tue Mar 31 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.33288 * 119.99885 * 2 1 4 4 H 1.08003 * 120.00219 * 170.65821 * 3 2 1 5 5 C 1.46783 * 120.00039 * 350.65416 * 3 2 1 6 6 N 1.29312 * 119.99851 * 5.51202 * 5 3 2 7 7 Si 1.86797 * 119.99918 * 185.50186 * 5 3 2 8 8 H 1.48501 * 109.47501 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47135 * 120.00469 * 7 5 3 10 10 H 1.48500 * 109.47324 * 240.00411 * 7 5 3 11 11 C 1.34775 * 120.00320 * 179.97438 * 2 1 3 12 12 O 1.21543 * 119.99664 * 4.40991 * 11 2 1 13 13 C 1.47190 * 120.00326 * 184.40879 * 11 2 1 14 14 C 1.39857 * 120.22640 * 308.10841 * 13 11 2 15 15 C 1.37679 * 119.92446 * 180.02562 * 14 13 11 16 16 N 1.48024 * 119.80356 * 179.97438 * 15 14 13 17 17 O 1.31701 * 119.99495 * 180.02562 * 16 15 14 18 18 O 1.31699 * 120.00136 * 0.02562 * 16 15 14 19 19 C 1.38703 * 120.38810 * 359.97438 * 15 14 13 20 20 C 1.37885 * 120.46149 * 0.25469 * 19 15 14 21 21 C 1.39059 * 120.06289 * 359.49437 * 20 19 15 22 22 S 1.76206 * 120.19213 * 180.22617 * 21 20 19 23 23 C 1.76192 * 102.99941 * 3.66588 * 22 21 20 24 24 C 1.38902 * 120.08694 * 102.47247 * 23 22 21 25 25 C 1.38118 * 119.94720 * 179.97438 * 24 23 22 26 26 C 1.38300 * 120.11520 * 0.02562 * 25 24 23 27 27 C 1.38296 * 120.17566 * 359.97438 * 26 25 24 28 28 C 1.38267 * 120.04952 * 359.70468 * 27 26 25 29 29 F 1.35104 * 120.05884 * 180.27013 * 28 27 26 30 30 H 1.08998 * 109.47289 * 184.28133 * 1 2 3 31 31 H 1.08996 * 109.47604 * 304.28531 * 1 2 3 32 32 H 1.09006 * 109.46847 * 64.28939 * 1 2 3 33 33 H 0.97000 * 119.99767 * 180.02562 * 6 5 3 34 34 H 1.08007 * 120.03751 * 0.04137 * 14 13 11 35 35 H 1.08002 * 119.77060 * 179.97438 * 19 15 14 36 36 H 1.07997 * 119.97133 * 179.74420 * 20 19 15 37 37 H 1.07993 * 120.02406 * 359.95324 * 24 23 22 38 38 H 1.08000 * 119.94389 * 179.97438 * 25 24 23 39 39 H 1.08009 * 119.91221 * 179.97438 * 26 25 24 40 40 H 1.07996 * 119.97518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1314 1.1543 0.0000 4 1 3.2006 1.1606 0.1518 5 6 1.4120 2.4171 -0.2064 6 7 0.1211 2.4209 -0.2817 7 14 2.3614 4.0184 -0.3601 8 1 3.8161 3.7450 -0.2405 9 1 2.0811 4.6352 -1.6815 10 1 1.9418 4.9482 0.7191 11 6 2.1389 -1.1671 0.0005 12 8 1.5339 -2.2182 -0.0799 13 6 3.6075 -1.1690 0.0985 14 6 4.3724 -0.3885 -0.7743 15 6 5.7457 -0.3953 -0.6775 16 7 6.5526 0.4313 -1.6031 17 8 7.8666 0.4272 -1.5141 18 8 5.9566 1.1708 -2.5154 19 6 6.3776 -1.1722 0.2822 20 6 5.6394 -1.9513 1.1478 21 6 4.2509 -1.9548 1.0703 22 16 3.3040 -2.9446 2.1786 23 6 4.5302 -3.6387 3.2365 24 6 4.7222 -3.1232 4.5120 25 6 5.6838 -3.6698 5.3390 26 6 6.4564 -4.7293 4.8993 27 6 6.2694 -5.2464 3.6303 28 6 5.3042 -4.7088 2.7989 29 9 5.1177 -5.2174 1.5612 30 1 -0.3634 -1.0248 0.0767 31 1 -0.3634 0.5789 0.8490 32 1 -0.3633 0.4459 -0.9260 33 1 -0.3542 3.2553 -0.4185 34 1 3.8862 0.2191 -1.5233 35 1 7.4555 -1.1704 0.3490 36 1 6.1397 -2.5564 1.8893 37 1 4.1202 -2.2954 4.8565 38 1 5.8333 -3.2687 6.3306 39 1 7.2078 -5.1540 5.5486 40 1 6.8748 -6.0735 3.2901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058150445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:50 Heat of formation + Delta-G solvation = 19.479752 kcal Electronic energy + Delta-G solvation = -31527.610175 eV Core-core repulsion = 26932.607482 eV Total energy + Delta-G solvation = -4595.002692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.073 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.09455 -41.66883 -40.34422 -39.88057 -38.98652 -36.92802 -35.63366 -34.02444 -33.22300 -32.91149 -32.15533 -31.48391 -28.51270 -27.93635 -26.74491 -24.82305 -24.03615 -23.72938 -23.62617 -21.52219 -20.44418 -19.58165 -19.22656 -18.73905 -18.45919 -17.97008 -17.58204 -17.43195 -17.16686 -16.93542 -16.72684 -16.40216 -16.27148 -15.69042 -15.60045 -15.35520 -15.07171 -14.74181 -14.48715 -14.32576 -14.06980 -13.74439 -13.57669 -13.53746 -13.28236 -12.91317 -12.86191 -12.79207 -12.56142 -12.48141 -12.42548 -12.31318 -12.18028 -11.93534 -11.67611 -11.50055 -11.19617 -10.69018 -10.35640 -10.28010 -10.18643 -9.86115 -8.82004 -8.58346 -5.84452 -1.91829 -0.50283 -0.40942 -0.17648 -0.03952 0.10567 0.38124 1.20284 1.25189 1.38908 1.47994 1.67628 2.08456 2.16592 2.47491 2.70240 2.87892 3.07856 3.20393 3.38995 3.61399 3.66424 3.70305 3.95789 3.97334 4.20926 4.22605 4.25303 4.38195 4.48960 4.56237 4.57483 4.70925 4.80258 4.92418 4.97337 5.02679 5.06914 5.12466 5.17977 5.28220 5.31104 5.45732 5.57817 5.74787 6.22002 6.78381 7.40448 7.87471 8.35741 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003738 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.166904 B = 7489.427924 C = 9101.995642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.398 5.398 3 C -0.404 4.404 4 H 0.106 0.894 5 C 0.024 3.976 6 N -0.841 5.841 7 Si 0.982 3.018 8 H -0.270 1.270 9 H -0.268 1.268 10 H -0.261 1.261 11 C 0.434 3.566 12 O -0.629 6.629 13 C -0.083 4.083 14 C 0.000 4.000 15 C -0.034 4.034 16 N -0.004 5.004 17 O -0.151 6.151 18 O -0.239 6.239 19 C -0.012 4.012 20 C -0.123 4.123 21 C -0.030 4.030 22 S 0.062 5.938 23 C -0.224 4.224 24 C -0.042 4.042 25 C -0.127 4.127 26 C -0.044 4.044 27 C -0.158 4.158 28 C 0.120 3.880 29 F -0.142 7.142 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.289 0.711 34 H 0.150 0.850 35 H 0.191 0.809 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.519 -10.049 14.610 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.109 5.109 3 C -0.532 4.532 4 H 0.124 0.876 5 C -0.189 4.189 6 N -0.473 5.473 7 Si 0.804 3.196 8 H -0.194 1.194 9 H -0.193 1.193 10 H -0.186 1.186 11 C 0.225 3.775 12 O -0.522 6.522 13 C -0.094 4.094 14 C -0.023 4.023 15 C -0.125 4.125 16 N 0.469 4.531 17 O -0.354 6.354 18 O -0.416 6.416 19 C -0.034 4.034 20 C -0.147 4.147 21 C -0.146 4.146 22 S 0.319 5.681 23 C -0.336 4.336 24 C -0.063 4.063 25 C -0.146 4.146 26 C -0.062 4.062 27 C -0.178 4.178 28 C 0.098 3.902 29 F -0.120 7.120 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.208 0.792 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.198 0.802 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.157 -10.932 14.961 21.629 hybrid contribution 1.099 1.418 -1.355 2.249 sum 12.256 -9.513 13.606 20.636 Atomic orbital electron populations 1.21550 0.79186 0.98270 1.02875 1.42771 1.06868 1.05250 1.55965 1.20933 0.93936 0.83478 1.54817 0.87620 1.27553 0.95778 1.02129 0.93475 1.69214 1.08895 1.30461 1.38744 0.85036 0.78713 0.76833 0.78999 1.19390 1.19287 1.18608 1.17494 0.86404 0.84037 0.89555 1.90605 1.68912 1.31480 1.61168 1.19358 0.94414 0.98508 0.97086 1.21127 0.90837 0.93512 0.96783 1.20248 0.90091 1.03634 0.98500 1.50522 1.02931 0.99091 1.00565 1.96164 0.89959 1.71410 1.77895 1.96322 1.73591 1.41532 1.30111 1.21234 1.03248 0.89792 0.89161 1.21234 0.90216 1.01670 1.01614 1.22991 0.97946 0.96696 0.96977 1.85659 1.05906 1.49572 1.26964 1.22479 1.06419 1.03223 1.01487 1.21687 0.96169 0.97986 0.90412 1.21729 0.94749 0.96765 1.01382 1.21776 0.97357 0.93245 0.93837 1.21545 0.98240 1.02934 0.95066 1.18197 0.97307 0.93735 0.81000 1.91554 1.94354 1.85840 1.40251 0.93891 0.91930 0.91807 0.89829 0.83279 0.79164 0.81249 0.83576 0.81137 0.80231 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.12 8.85 127.77 1.13 7.25 16 2 N -0.40 -20.44 2.93 -658.02 -1.93 -22.37 16 3 C -0.40 -20.29 8.57 86.71 0.74 -19.55 16 4 H 0.11 5.22 5.12 -2.91 -0.01 5.20 16 5 C 0.02 1.14 5.63 87.30 0.49 1.63 16 6 N -0.84 -40.49 9.58 23.26 0.22 -40.27 16 7 Si 0.98 38.80 29.65 68.60 2.03 40.84 16 8 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 9 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 10 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 11 C 0.43 21.86 6.56 86.60 0.57 22.43 16 12 O -0.63 -34.28 15.24 -3.85 -0.06 -34.34 16 13 C -0.08 -3.59 5.00 -19.97 -0.10 -3.69 16 14 C 0.00 0.01 7.01 22.53 0.16 0.17 16 15 C -0.03 -1.22 6.88 36.35 0.25 -0.97 16 16 N 0.00 -0.17 4.98 -46.51 -0.23 -0.40 16 17 O -0.15 -5.26 19.13 3.51 0.07 -5.19 16 18 O -0.24 -10.30 19.13 3.52 0.07 -10.24 16 19 C -0.01 -0.34 9.56 22.30 0.21 -0.13 16 20 C -0.12 -3.43 9.27 22.38 0.21 -3.22 16 21 C -0.03 -1.09 6.16 23.03 0.14 -0.95 16 22 S 0.06 2.15 19.65 -56.49 -1.11 1.04 16 23 C -0.22 -5.31 4.19 22.64 0.09 -5.22 16 24 C -0.04 -0.72 9.79 22.40 0.22 -0.50 16 25 C -0.13 -1.18 10.04 22.26 0.22 -0.96 16 26 C -0.04 -0.33 10.04 22.30 0.22 -0.10 16 27 C -0.16 -2.00 10.02 22.29 0.22 -1.78 16 28 C 0.12 2.59 6.15 22.49 0.14 2.72 16 29 F -0.14 -3.88 16.76 44.97 0.75 -3.13 16 30 H 0.04 2.09 6.93 -2.39 -0.02 2.08 16 31 H 0.06 3.08 7.24 -2.39 -0.02 3.07 16 32 H 0.06 3.22 6.92 -2.38 -0.02 3.21 16 33 H 0.29 12.74 8.26 -92.71 -0.77 11.97 16 34 H 0.15 6.72 6.65 -2.91 -0.02 6.70 16 35 H 0.19 3.82 7.56 -2.91 -0.02 3.80 16 36 H 0.17 3.72 5.64 -2.91 -0.02 3.70 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16 39 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 40 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -68.08 368.65 5.88 -62.19 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.14 Total: 14.71 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.93 Total: -2.86 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -1.93 Total: -63.03 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: 0.08 Total: -49.76 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.13 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.11 Total: 1.04 kcal Total: -68.08 5.88 -62.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058150445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.674 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds