Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37927 * 120.00184 * 51.75214 * 3 2 1 5 5 C 1.46280 * 119.99973 * 185.80164 * 4 3 2 6 6 C 1.40228 * 120.25468 * 40.72704 * 5 4 3 7 7 C 1.37625 * 119.86904 * 180.02562 * 6 5 4 8 8 C 1.38719 * 120.39178 * 0.02562 * 7 6 5 9 9 C 1.38044 * 120.51891 * 359.68225 * 8 7 6 10 10 C 1.38781 * 120.11602 * 0.59666 * 9 8 7 11 11 O 1.35431 * 120.19805 * 179.70399 * 10 9 8 12 12 C 1.34741 * 116.99717 * 3.98592 * 11 10 9 13 13 H 1.08000 * 120.00454 * 354.96485 * 12 11 10 14 14 C 1.38783 * 119.99642 * 174.68045 * 12 11 10 15 15 N 1.31468 * 120.00382 * 0.28392 * 14 12 11 16 16 Si 1.86801 * 119.99677 * 180.27829 * 14 12 11 17 17 H 1.48495 * 109.47119 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46935 * 120.00592 * 16 14 12 19 19 H 1.48496 * 109.47148 * 240.00012 * 16 14 12 20 20 C 1.47141 * 119.99767 * 231.75261 * 3 2 1 21 21 O 1.21795 * 120.00058 * 246.22126 * 20 3 2 22 22 C 1.46931 * 120.00095 * 66.22333 * 20 3 2 23 23 C 1.36479 * 126.77003 * 5.11443 * 22 20 3 24 24 N 1.35524 * 109.74189 * 179.83299 * 23 22 20 25 25 H 0.96998 * 124.79186 * 180.18271 * 24 23 22 26 26 C 1.37992 * 110.42661 * 0.45343 * 24 23 22 27 27 C 1.39103 * 133.14245 * 179.73418 * 26 24 23 28 28 C 1.37979 * 119.91177 * 179.97438 * 27 26 24 29 29 F 1.35102 * 119.70947 * 179.97438 * 28 27 26 30 30 C 1.38948 * 120.58277 * 0.02562 * 28 27 26 31 31 C 1.37747 * 120.27101 * 359.97438 * 30 28 27 32 32 C 1.39282 * 119.70548 * 0.02562 * 31 30 28 33 33 H 1.07999 * 120.00094 * 5.80127 * 4 3 2 34 34 H 1.07999 * 120.06015 * 0.04650 * 6 5 4 35 35 H 1.08001 * 119.80013 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.74059 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.94426 * 180.30038 * 9 8 7 38 38 H 0.96994 * 120.00036 * 179.97438 * 15 14 12 39 39 H 1.08004 * 125.13205 * 359.97051 * 23 22 20 40 40 H 1.07996 * 120.04393 * 0.02562 * 27 26 24 41 41 H 1.07992 * 119.86727 * 179.97438 * 30 28 27 42 42 H 1.07997 * 120.15057 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2580 -0.7385 -0.9381 5 6 4.7152 -0.8404 -0.8613 6 6 5.3478 -1.0007 0.3799 7 6 6.7194 -1.0952 0.4429 8 6 7.4812 -1.0323 -0.7147 9 6 6.8748 -0.8807 -1.9455 10 6 5.4936 -0.7774 -2.0333 11 8 4.8974 -0.6226 -3.2394 12 6 5.6947 -0.6591 -4.3251 13 1 6.7661 -0.7249 -4.2063 14 6 5.1386 -0.6182 -5.5960 15 7 3.8344 -0.5382 -5.7407 16 14 6.2435 -0.6767 -7.1011 17 1 7.6619 -0.7658 -6.6707 18 1 5.8998 -1.8659 -7.9214 19 1 6.0468 0.5545 -7.9076 20 6 3.3033 0.7898 1.0008 21 8 3.9756 1.7430 0.6505 22 6 3.2265 0.4280 2.4228 23 6 2.5998 -0.6609 2.9560 24 7 2.7472 -0.6598 4.3032 25 1 2.3898 -1.3361 4.8996 26 6 3.4722 0.4426 4.7074 27 6 3.8871 0.9038 5.9524 28 6 4.6197 2.0694 6.0452 29 9 5.0202 2.5139 7.2565 30 6 4.9483 2.7906 4.9039 31 6 4.5455 2.3483 3.6631 32 6 3.8055 1.1732 3.5559 33 1 2.7224 -1.2420 -1.7292 34 1 4.7598 -1.0503 1.2844 35 1 7.2055 -1.2191 1.3994 36 1 8.5568 -1.1071 -0.6529 37 1 7.4766 -0.8376 -2.8413 38 1 3.4459 -0.5092 -6.6289 39 1 2.0686 -1.4116 2.3896 40 1 3.6370 0.3499 6.8451 41 1 5.5218 3.7016 4.9899 42 1 4.8023 2.9102 2.7772 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = 29.675942 kcal Electronic energy + Delta-G solvation = -32282.367665 eV Core-core repulsion = 27688.196256 eV Total energy + Delta-G solvation = -4594.171409 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.101 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.07107 -41.69051 -39.56738 -38.63392 -36.96776 -36.63218 -36.33451 -33.60028 -32.55501 -32.23679 -30.06123 -29.76161 -29.29478 -28.58639 -25.60498 -24.89916 -23.49085 -23.04083 -22.07782 -21.71188 -20.58918 -19.80511 -18.67153 -18.24134 -17.44753 -17.05282 -16.72365 -16.46585 -15.85127 -15.61413 -15.48213 -15.06495 -14.82353 -14.66049 -14.58155 -14.21312 -14.15704 -13.88779 -13.85314 -13.66948 -13.56336 -13.24187 -13.03904 -12.81144 -12.66222 -12.58414 -12.26142 -12.07555 -11.88942 -11.64854 -11.53813 -11.38066 -11.07445 -10.95162 -10.90161 -10.56540 -9.92738 -9.68885 -9.57081 -9.44124 -9.04721 -8.57792 -8.09411 -8.02645 -7.34588 -6.68918 -4.24831 0.58993 0.88676 1.11621 1.60296 2.19415 2.27555 2.58481 2.83046 3.02125 3.02963 3.07270 3.09098 3.53236 3.61739 3.78495 4.01392 4.13866 4.33208 4.40226 4.46808 4.59573 4.77400 4.87756 4.92670 4.94400 5.03786 5.17714 5.35763 5.37561 5.46211 5.61801 5.67189 5.78638 5.88572 5.93912 6.00099 6.11959 6.22046 6.24338 6.33654 6.42830 6.45064 6.59232 6.74923 6.88336 7.00424 7.02199 7.13892 7.18479 7.56637 7.72531 7.75057 7.83832 8.75735 9.39415 10.47307 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.002422 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.676034 B =11556.830925 C =12655.968576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.275 3.725 3 C -0.205 4.205 4 C 0.106 3.894 5 C -0.188 4.188 6 C -0.041 4.041 7 C -0.213 4.213 8 C -0.051 4.051 9 C -0.230 4.230 10 C 0.182 3.818 11 O -0.156 6.156 12 C -0.394 4.394 13 H 0.098 0.902 14 C 0.044 3.956 15 N -0.848 5.848 16 Si 0.944 3.056 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.491 3.509 21 O -0.432 6.432 22 C -0.240 4.240 23 C 0.127 3.873 24 N -0.575 5.575 25 H 0.422 0.578 26 C 0.109 3.891 27 C -0.164 4.164 28 C 0.116 3.884 29 F -0.140 7.140 30 C -0.172 4.172 31 C -0.032 4.032 32 C -0.074 4.074 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.275 0.725 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -2.019 19.106 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.038 4.038 3 C -0.211 4.211 4 C 0.083 3.917 5 C -0.190 4.190 6 C -0.059 4.059 7 C -0.232 4.232 8 C -0.069 4.069 9 C -0.249 4.249 10 C 0.125 3.875 11 O -0.057 6.057 12 C -0.469 4.469 13 H 0.116 0.884 14 C -0.163 4.163 15 N -0.480 5.480 16 Si 0.768 3.232 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.199 1.199 20 C 0.366 3.634 21 O -0.305 6.305 22 C -0.248 4.248 23 C -0.005 4.005 24 N -0.177 5.177 25 H 0.260 0.740 26 C 0.003 3.997 27 C -0.186 4.186 28 C 0.096 3.904 29 F -0.118 7.118 30 C -0.192 4.192 31 C -0.050 4.050 32 C -0.078 4.078 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.202 0.798 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.104 -1.498 18.744 18.804 hybrid contribution 0.849 -0.425 -0.277 0.989 sum 0.953 -1.923 18.467 18.591 Atomic orbital electron populations 1.81202 1.11787 1.09913 1.08885 1.25259 0.91963 0.93187 0.93377 1.18202 0.85125 1.11294 1.06429 1.22771 0.92956 0.86161 0.89798 1.17842 0.90923 1.18300 0.91933 1.21028 0.94796 0.95470 0.94633 1.20487 0.93532 1.11490 0.97704 1.20970 0.98836 0.94903 0.92199 1.21145 0.94306 1.10930 0.98565 1.19366 0.90963 0.91084 0.86075 1.83831 1.36502 1.74506 1.10822 1.21509 0.90697 1.52818 0.81903 0.88424 1.25382 0.96593 0.95920 0.98378 1.69986 1.10074 1.43424 1.24522 0.85594 0.79309 0.78505 0.79787 1.18845 1.19927 1.19883 1.18725 0.77689 0.81795 0.85155 1.90692 1.33408 1.24068 1.82315 1.20740 1.10469 0.99475 0.94103 1.22307 0.97138 0.98536 0.82483 1.41558 1.46741 1.22222 1.07164 0.73990 1.17768 0.98271 0.89560 0.94074 1.19718 1.04947 0.98233 0.95693 1.17142 0.98706 0.94186 0.80385 1.91495 1.88891 1.88943 1.42486 1.20971 1.05089 1.02108 0.91013 1.20589 0.93401 0.93605 0.97435 1.18890 1.01463 0.96278 0.91130 0.84004 0.86372 0.87185 0.87045 0.84954 0.91529 0.79808 0.84873 0.84371 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.61 18.54 41.84 0.78 -6.84 16 2 C 0.28 4.42 15.26 -22.47 -0.34 4.07 16 3 C -0.21 -3.25 4.99 -104.47 -0.52 -3.77 16 4 C 0.11 1.82 9.12 -36.47 -0.33 1.49 16 5 C -0.19 -3.51 5.30 -104.93 -0.56 -4.07 16 6 C -0.04 -0.67 8.24 -39.06 -0.32 -0.99 16 7 C -0.21 -3.34 10.02 -39.63 -0.40 -3.74 16 8 C -0.05 -0.83 10.03 -39.47 -0.40 -1.23 16 9 C -0.23 -4.48 9.16 -39.45 -0.36 -4.85 16 10 C 0.18 3.94 6.68 -38.40 -0.26 3.68 16 11 O -0.16 -3.98 9.21 1.28 0.01 -3.96 16 12 C -0.39 -9.98 9.49 30.93 0.29 -9.68 16 13 H 0.10 2.27 5.20 -52.49 -0.27 2.00 16 14 C 0.04 1.11 5.50 -17.51 -0.10 1.02 16 15 N -0.85 -22.96 13.67 55.49 0.76 -22.20 16 16 Si 0.94 18.98 29.55 -169.99 -5.02 13.95 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C 0.49 7.78 3.89 -32.45 -0.13 7.66 16 21 O -0.43 -8.17 16.70 5.10 0.09 -8.09 16 22 C -0.24 -3.07 4.98 -103.25 -0.51 -3.58 16 23 C 0.13 1.19 11.07 -16.56 -0.18 1.00 16 24 N -0.58 -4.37 5.99 -10.45 -0.06 -4.43 16 25 H 0.42 1.65 8.96 -40.82 -0.37 1.28 16 26 C 0.11 1.10 7.25 -83.96 -0.61 0.49 16 27 C -0.16 -1.54 10.04 -39.36 -0.40 -1.93 16 28 C 0.12 1.21 7.28 -39.41 -0.29 0.92 16 29 F -0.14 -1.48 17.25 2.25 0.04 -1.45 16 30 C -0.17 -1.81 10.01 -39.50 -0.40 -2.21 16 31 C -0.03 -0.39 9.85 -39.37 -0.39 -0.77 16 32 C -0.07 -0.92 6.27 -104.94 -0.66 -1.58 16 33 H 0.14 2.45 8.06 -52.49 -0.42 2.02 16 34 H 0.12 1.65 5.45 -52.49 -0.29 1.36 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 2.55 5.62 -52.49 -0.30 2.25 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.18 1.28 7.96 -52.48 -0.42 0.86 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.15 1.82 7.46 -52.49 -0.39 1.43 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -31.19 385.91 -7.72 -38.91 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.28 Total: 6.34 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -6.84 Total: -18.06 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 1.47 Total: -33.47 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.19 -7.72 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.584 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds