Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46898 * 299.99789 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99700 * 3 2 1 7 7 C 1.38799 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 N 1.46498 * 109.44278 * 181.23594 * 16 15 14 18 18 C 1.34776 * 119.99920 * 84.79819 * 17 16 15 19 19 O 1.21286 * 120.00057 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46879 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.47394 * 180.02562 * 21 20 18 23 23 C 1.38229 * 119.99837 * 269.72744 * 22 21 20 24 24 C 1.38231 * 119.99771 * 179.76137 * 23 22 21 25 25 C 1.38235 * 120.00313 * 0.50773 * 24 23 22 26 26 C 1.38237 * 119.99885 * 359.74280 * 25 24 23 27 27 C 1.38235 * 119.99837 * 89.99417 * 22 21 20 28 28 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 29 29 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 30 30 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 32 32 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 33 33 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 34 34 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 35 35 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 36 36 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 37 37 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 38 38 H 0.97004 * 120.00020 * 264.79513 * 17 16 15 39 39 H 1.08998 * 109.47411 * 299.99339 * 20 18 17 40 40 H 1.09002 * 109.47325 * 60.00148 * 20 18 17 41 41 H 1.09004 * 109.47249 * 299.99882 * 21 20 18 42 42 H 1.08992 * 109.47506 * 59.99787 * 21 20 18 43 43 H 1.07998 * 120.00151 * 359.97438 * 23 22 21 44 44 H 1.08009 * 120.00341 * 180.22909 * 24 23 22 45 45 H 1.07997 * 120.00193 * 179.72828 * 25 24 23 46 46 H 1.07994 * 120.00238 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00100 * 0.02562 * 27 22 21 48 48 H 1.09002 * 109.49876 * 178.74890 * 28 16 15 49 49 H 1.09005 * 109.52615 * 58.67140 * 28 16 15 50 50 H 1.08998 * 109.58787 * 246.16207 * 29 13 11 51 51 H 1.09007 * 109.58600 * 6.44520 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 2.3441 -7.7246 0.0003 15 6 2.9845 -8.4840 1.1666 16 6 4.5076 -8.3637 1.0730 17 7 5.1242 -9.1134 2.1702 18 6 5.3459 -10.4365 2.0412 19 8 5.0345 -11.0066 1.0170 20 6 5.9798 -11.2079 3.1701 21 6 6.1174 -12.6780 2.7691 22 6 6.7507 -13.4495 3.8982 23 6 8.1252 -13.5827 3.9587 24 6 8.7063 -14.2862 4.9971 25 6 7.9124 -14.8655 5.9692 26 6 6.5375 -14.7367 5.9058 27 6 5.9566 -14.0287 4.8703 28 6 4.9146 -6.8916 1.1694 29 6 4.2960 -6.1173 0.0019 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7313 0.8905 32 1 3.1245 -3.7313 -0.8894 33 1 1.2605 -7.7210 0.1176 34 1 2.6082 -8.2088 -0.9399 35 1 2.6449 -8.0558 2.1097 36 1 2.6966 -9.5342 1.1187 37 1 4.8443 -8.7719 0.1200 38 1 5.3730 -8.6575 2.9895 39 1 6.9659 -10.7953 3.3834 40 1 5.3537 -11.1312 4.0591 41 1 5.1312 -13.0904 2.5561 42 1 6.7432 -12.7551 1.8801 43 1 8.7453 -13.1342 3.1967 44 1 9.7806 -14.3872 5.0465 45 1 8.3662 -15.4189 6.7780 46 1 5.9172 -15.1896 6.6650 47 1 4.8824 -13.9286 4.8204 48 1 6.0007 -6.8107 1.1248 49 1 4.5573 -6.4757 2.1115 50 1 4.7219 -6.4708 -0.9371 51 1 4.5001 -5.0528 0.1179 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -62.114111 kcal Electronic energy + Delta-G solvation = -30134.913098 eV Core-core repulsion = 25931.498724 eV Total energy + Delta-G solvation = -4203.414374 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.58289 -39.83473 -39.35849 -37.34455 -34.79523 -34.42626 -32.44725 -31.98758 -31.37564 -31.32909 -30.01182 -28.84245 -25.80804 -25.47738 -24.17153 -23.43156 -23.01565 -21.57678 -21.09816 -20.58544 -19.16201 -17.83490 -17.54683 -17.03312 -16.86366 -16.29015 -16.08329 -15.65085 -15.49169 -15.36118 -15.22361 -14.82328 -14.45430 -14.32444 -14.13451 -13.88675 -13.82992 -13.59346 -13.42623 -13.19611 -13.10607 -12.95850 -12.71140 -12.45823 -12.32305 -12.13167 -11.84592 -11.75423 -11.49241 -11.43781 -11.27541 -11.17661 -11.08844 -11.03568 -10.92896 -10.76802 -10.18973 -9.81474 -9.44941 -9.36737 -9.30619 -9.14368 -9.09231 -8.58067 -8.23771 -6.52010 -6.23486 -3.94176 0.89168 0.95500 2.31133 2.75884 2.90868 3.05720 3.19933 3.24524 3.29434 3.34876 3.57216 4.17004 4.18124 4.37030 4.38053 4.52018 4.52640 4.56209 4.68058 4.68700 4.77081 4.79825 4.86217 5.01251 5.07065 5.07272 5.07497 5.11061 5.11877 5.23550 5.34263 5.40059 5.51186 5.51935 5.52677 5.58395 5.62771 5.69091 5.73295 5.76825 5.83925 5.92058 6.02111 6.02895 6.07972 6.08315 6.16915 6.19542 6.56284 6.61026 7.14437 7.52347 7.58045 7.89047 8.33416 8.53817 9.21947 10.84000 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001272 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.787283 B =21999.952065 C =22531.414887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.622 5.622 14 C 0.116 3.884 15 C -0.142 4.142 16 C 0.145 3.855 17 N -0.728 5.728 18 C 0.513 3.487 19 O -0.539 6.539 20 C -0.135 4.135 21 C -0.065 4.065 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.143 4.143 29 C 0.113 3.887 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.401 0.599 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.163 -27.875 10.352 35.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.323 3.677 12 O -0.390 6.390 13 N -0.358 5.358 14 C -0.007 4.007 15 C -0.181 4.181 16 C 0.041 3.959 17 N -0.379 5.379 18 C 0.299 3.701 19 O -0.415 6.415 20 C -0.175 4.175 21 C -0.103 4.103 22 C -0.082 4.082 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.181 4.181 29 C -0.012 4.012 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.983 -28.469 9.596 34.511 hybrid contribution 2.218 1.498 0.561 2.734 sum 19.201 -26.971 10.157 34.631 Atomic orbital electron populations 1.70027 1.05959 1.27358 1.46897 1.24989 0.95011 0.99016 0.94528 0.86125 0.79574 0.81920 0.77920 1.19619 1.20551 1.20576 1.22895 0.94901 0.91615 1.58892 0.90898 1.85436 1.04980 0.96366 1.96689 1.23558 1.06498 0.95423 1.04675 1.20340 0.86216 0.86185 0.74928 1.90693 1.15199 1.85203 1.47868 1.48144 1.06205 1.05886 1.75611 1.21459 1.00874 0.80912 0.97491 1.22307 0.94808 1.01231 0.99786 1.20983 0.92706 0.91071 0.91128 1.46152 1.63337 1.08839 1.19541 1.20710 0.78262 0.82136 0.88953 1.90725 1.51595 1.68797 1.30401 1.21663 1.02544 0.95605 0.97682 1.20336 1.02173 0.92034 0.95774 1.19919 0.93673 0.98263 0.96375 1.21099 0.94338 0.99449 0.98616 1.21172 0.99893 0.97898 0.94730 1.21178 0.93974 1.00120 0.99090 1.21180 0.95077 0.99032 0.98358 1.21116 0.99889 0.97984 0.94475 1.22210 1.01354 0.94085 1.00487 1.21627 0.80178 1.01584 0.97773 0.92222 0.89284 0.89234 0.88543 0.91582 0.91226 0.90363 0.89174 0.76540 0.88739 0.88695 0.90064 0.90094 0.86019 0.86085 0.86182 0.86057 0.85976 0.90009 0.90575 0.91144 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.00 4.50 36.00 0.16 -2.83 16 11 C 0.54 10.02 7.72 -10.98 -0.08 9.93 16 12 O -0.52 -11.73 15.27 5.56 0.08 -11.65 16 13 N -0.62 -8.55 2.98 -172.80 -0.51 -9.07 16 14 C 0.12 1.43 6.43 -3.71 -0.02 1.41 16 15 C -0.14 -1.45 5.66 -26.59 -0.15 -1.60 16 16 C 0.15 1.25 2.41 -67.88 -0.16 1.09 16 17 N -0.73 -5.04 5.08 -53.75 -0.27 -5.32 16 18 C 0.51 4.27 7.79 -10.99 -0.09 4.19 16 19 O -0.54 -6.62 15.65 5.55 0.09 -6.54 16 20 C -0.13 -0.74 5.68 -27.88 -0.16 -0.89 16 21 C -0.07 -0.43 4.63 -27.88 -0.13 -0.56 16 22 C -0.08 -0.53 5.13 -104.62 -0.54 -1.07 16 23 C -0.12 -0.72 9.70 -39.59 -0.38 -1.11 16 24 C -0.12 -0.69 10.05 -39.59 -0.40 -1.08 16 25 C -0.13 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 27 C -0.12 -0.74 9.70 -39.58 -0.38 -1.12 16 28 C -0.14 -1.10 5.55 -26.64 -0.15 -1.25 16 29 C 0.11 1.13 6.34 -3.74 -0.02 1.10 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.61 7.69 -51.92 -0.40 1.21 16 32 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 33 H 0.10 1.38 7.00 -51.93 -0.36 1.01 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 38 H 0.40 1.80 8.60 -40.82 -0.35 1.45 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 42 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 43 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.12 0.48 8.06 -52.48 -0.42 0.06 16 45 H 0.12 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 47 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.10 0.97 5.93 -51.92 -0.31 0.66 16 LS Contribution 432.40 15.07 6.52 6.52 Total: -1.00 -36.45 432.40 -11.81 -48.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.10 Total: -0.48 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.11 Total: -8.76 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.05 Total: -39.62 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -36.45 -11.81 -48.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.850 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds