Wall clock time and date at job start Tue Mar 31 2020 06:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46898 * 299.99789 * 3 2 1 6 6 H 1.48500 * 109.47178 * 59.99700 * 3 2 1 7 7 C 1.38799 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 N 1.46498 * 109.44278 * 181.23594 * 16 15 14 18 18 C 1.34776 * 119.99920 * 84.79819 * 17 16 15 19 19 O 1.21286 * 120.00057 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46879 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.47394 * 180.02562 * 21 20 18 23 23 C 1.38229 * 119.99837 * 269.72744 * 22 21 20 24 24 C 1.38231 * 119.99771 * 179.76137 * 23 22 21 25 25 C 1.38235 * 120.00313 * 0.50773 * 24 23 22 26 26 C 1.38237 * 119.99885 * 359.74280 * 25 24 23 27 27 C 1.38235 * 119.99837 * 89.99417 * 22 21 20 28 28 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 29 29 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 30 30 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 32 32 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 33 33 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 34 34 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 35 35 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 36 36 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 37 37 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 38 38 H 0.97004 * 120.00020 * 264.79513 * 17 16 15 39 39 H 1.08998 * 109.47411 * 299.99339 * 20 18 17 40 40 H 1.09002 * 109.47325 * 60.00148 * 20 18 17 41 41 H 1.09004 * 109.47249 * 299.99882 * 21 20 18 42 42 H 1.08992 * 109.47506 * 59.99787 * 21 20 18 43 43 H 1.07998 * 120.00151 * 359.97438 * 23 22 21 44 44 H 1.08009 * 120.00341 * 180.22909 * 24 23 22 45 45 H 1.07997 * 120.00193 * 179.72828 * 25 24 23 46 46 H 1.07994 * 120.00238 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00100 * 0.02562 * 27 22 21 48 48 H 1.09002 * 109.49876 * 178.74890 * 28 16 15 49 49 H 1.09005 * 109.52615 * 58.67140 * 28 16 15 50 50 H 1.08998 * 109.58787 * 246.16207 * 29 13 11 51 51 H 1.09007 * 109.58600 * 6.44520 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 2.3441 -7.7246 0.0003 15 6 2.9845 -8.4840 1.1666 16 6 4.5076 -8.3637 1.0730 17 7 5.1242 -9.1134 2.1702 18 6 5.3459 -10.4365 2.0412 19 8 5.0345 -11.0066 1.0170 20 6 5.9798 -11.2079 3.1701 21 6 6.1174 -12.6780 2.7691 22 6 6.7507 -13.4495 3.8982 23 6 8.1252 -13.5827 3.9587 24 6 8.7063 -14.2862 4.9971 25 6 7.9124 -14.8655 5.9692 26 6 6.5375 -14.7367 5.9058 27 6 5.9566 -14.0287 4.8703 28 6 4.9146 -6.8916 1.1694 29 6 4.2960 -6.1173 0.0019 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7313 0.8905 32 1 3.1245 -3.7313 -0.8894 33 1 1.2605 -7.7210 0.1176 34 1 2.6082 -8.2088 -0.9399 35 1 2.6449 -8.0558 2.1097 36 1 2.6966 -9.5342 1.1187 37 1 4.8443 -8.7719 0.1200 38 1 5.3730 -8.6575 2.9895 39 1 6.9659 -10.7953 3.3834 40 1 5.3537 -11.1312 4.0591 41 1 5.1312 -13.0904 2.5561 42 1 6.7432 -12.7551 1.8801 43 1 8.7453 -13.1342 3.1967 44 1 9.7806 -14.3872 5.0465 45 1 8.3662 -15.4189 6.7780 46 1 5.9172 -15.1896 6.6650 47 1 4.8824 -13.9286 4.8204 48 1 6.0007 -6.8107 1.1248 49 1 4.5573 -6.4757 2.1115 50 1 4.7219 -6.4708 -0.9371 51 1 4.5001 -5.0528 0.1179 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058224463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:59 Heat of formation + Delta-G solvation = -84.375173 kcal Electronic energy + Delta-G solvation = -30135.878410 eV Core-core repulsion = 25931.498724 eV Total energy + Delta-G solvation = -4204.379686 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.45298 -40.71634 -39.99016 -38.43479 -35.72356 -34.94737 -34.57330 -33.02415 -32.19933 -31.73567 -30.69529 -30.09210 -27.67509 -26.48423 -24.90751 -24.34335 -23.42692 -22.28030 -21.83863 -21.22143 -20.40421 -19.55721 -18.31927 -18.12876 -17.40274 -17.09207 -16.92541 -16.85364 -16.75064 -16.60592 -15.93585 -15.88755 -15.77012 -15.21089 -14.99399 -14.96703 -14.49476 -14.48623 -14.30576 -14.23845 -13.96672 -13.83166 -13.61252 -13.44478 -13.35636 -13.14759 -13.01375 -12.90781 -12.75557 -12.58248 -12.29489 -12.18898 -11.98637 -11.88303 -11.75029 -11.70763 -11.68229 -11.14951 -10.96064 -10.83758 -10.24258 -10.07380 -9.79126 -9.75211 -9.57726 -8.66347 -8.33607 -6.11884 0.45996 0.53045 1.26354 1.42462 1.46967 1.55971 1.58058 1.67113 2.07583 2.19929 2.28192 2.91558 3.00999 3.25574 3.57262 3.65112 3.71471 3.89345 3.95745 4.01239 4.04053 4.08247 4.18034 4.25167 4.26640 4.27625 4.29842 4.36159 4.38586 4.46120 4.56781 4.66340 4.66695 4.69943 4.74942 4.78071 4.81047 4.95137 4.97499 5.02744 5.09642 5.21764 5.22216 5.25401 5.43430 5.50580 5.53506 5.61358 5.66917 5.75345 6.15775 6.21143 6.26929 6.58780 7.07954 7.13026 7.29427 8.75924 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001272 C = 0.001242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.787283 B =21999.952065 C =22531.414887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.607 5.607 14 C 0.115 3.885 15 C -0.131 4.131 16 C 0.150 3.850 17 N -0.715 5.715 18 C 0.512 3.488 19 O -0.582 6.582 20 C -0.125 4.125 21 C -0.061 4.061 22 C -0.089 4.089 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.130 4.130 28 C -0.131 4.131 29 C 0.102 3.898 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.416 0.584 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.896 -27.883 11.502 37.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.447 6.447 13 N -0.341 5.341 14 C -0.008 4.008 15 C -0.171 4.171 16 C 0.045 3.955 17 N -0.367 5.367 18 C 0.300 3.700 19 O -0.462 6.462 20 C -0.165 4.165 21 C -0.098 4.098 22 C -0.090 4.090 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.146 4.146 27 C -0.148 4.148 28 C -0.170 4.170 29 C -0.021 4.021 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.146 0.854 48 H 0.130 0.870 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.784 -28.499 10.777 36.882 hybrid contribution 1.113 1.320 0.199 1.738 sum 21.897 -27.179 10.977 36.588 Atomic orbital electron populations 1.70196 1.08046 1.28509 1.48170 1.26122 0.95915 1.03311 0.93757 0.84911 0.78747 0.76343 0.77983 1.17766 1.20116 1.20017 1.23227 0.95375 0.91791 1.58650 0.89700 1.85660 1.10770 0.99418 1.97028 1.23374 1.03368 0.94051 1.06597 1.20186 0.85954 0.86731 0.75033 1.90677 1.17426 1.85801 1.50761 1.48129 1.07506 1.05202 1.73312 1.21536 0.99717 0.80352 0.99230 1.22187 0.96183 1.00309 0.98392 1.20827 0.91280 0.91964 0.91396 1.46012 1.62478 1.08476 1.19732 1.21192 0.77541 0.82359 0.88921 1.90714 1.53512 1.69688 1.32279 1.21641 1.03660 0.94370 0.96820 1.20237 1.01154 0.92888 0.95561 1.19940 0.93983 0.98658 0.96374 1.21299 0.94374 0.99724 0.99127 1.21447 1.00916 0.97578 0.94531 1.21470 0.94053 1.00102 0.99592 1.21434 0.95585 0.98974 0.98606 1.21294 1.00366 0.98333 0.94787 1.22140 1.02901 0.92562 0.99375 1.22004 0.77531 1.02532 1.00015 0.92052 0.87008 0.87284 0.91088 0.90226 0.91640 0.90872 0.90113 0.74716 0.86611 0.87153 0.91492 0.91083 0.85020 0.84455 0.84540 0.84684 0.85419 0.87037 0.90357 0.89124 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.92 29.55 68.60 2.03 44.94 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.47 9.50 67.95 0.65 -29.82 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.12 -4.78 4.50 71.24 0.32 -4.46 16 11 C 0.53 19.95 7.72 87.66 0.68 20.63 16 12 O -0.57 -26.88 15.27 -3.01 -0.05 -26.92 16 13 N -0.61 -15.97 2.98 -819.01 -2.44 -18.41 16 14 C 0.11 2.79 6.43 86.36 0.56 3.35 16 15 C -0.13 -2.55 5.66 30.68 0.17 -2.37 16 16 C 0.15 2.23 2.41 45.03 0.11 2.34 16 17 N -0.72 -8.06 5.08 -442.35 -2.25 -10.31 16 18 C 0.51 7.67 7.79 87.66 0.68 8.35 16 19 O -0.58 -13.98 15.65 -3.05 -0.05 -14.03 16 20 C -0.13 -1.12 5.68 29.85 0.17 -0.95 16 21 C -0.06 -0.75 4.63 29.85 0.14 -0.61 16 22 C -0.09 -1.08 5.13 -19.87 -0.10 -1.18 16 23 C -0.13 -1.40 9.70 22.27 0.22 -1.18 16 24 C -0.13 -1.26 10.05 22.27 0.22 -1.04 16 25 C -0.13 -1.33 10.05 22.27 0.22 -1.10 16 26 C -0.13 -1.36 10.05 22.27 0.22 -1.13 16 27 C -0.13 -1.53 9.70 22.27 0.22 -1.31 16 28 C -0.13 -1.56 5.55 30.65 0.17 -1.39 16 29 C 0.10 1.73 6.34 86.34 0.55 2.27 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.11 3.82 7.69 -2.39 -0.02 3.81 16 32 H 0.11 3.81 7.94 -2.40 -0.02 3.79 16 33 H 0.07 2.12 7.00 -2.39 -0.02 2.11 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.44 7.58 -2.38 -0.02 1.42 16 38 H 0.42 2.30 8.60 -92.71 -0.80 1.50 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 1.01 8.04 -2.38 -0.02 0.99 16 42 H 0.07 1.01 8.04 -2.39 -0.02 0.99 16 43 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 47 H 0.13 1.25 8.06 -2.91 -0.02 1.22 16 48 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.10 1.67 5.93 -2.38 -0.01 1.65 16 Total: -1.00 -82.93 432.40 2.16 -80.77 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.13 Total: 17.64 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.66 Total: -8.38 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -4.40 Total: -84.24 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.09 Total: -40.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -82.93 2.16 -80.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.607 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds