Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46984 * 2 1 4 4 C 1.46897 * 110.99951 * 302.04285 * 3 2 1 5 5 C 1.50704 * 109.47313 * 289.05591 * 4 3 2 6 6 H 1.08000 * 119.99396 * 4.87071 * 5 4 3 7 7 C 1.37871 * 120.00171 * 184.87382 * 5 4 3 8 8 N 1.31513 * 120.00471 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47330 * 59.99596 * 9 7 5 11 11 H 1.48502 * 109.47508 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47199 * 299.99956 * 9 7 5 13 13 C 1.46895 * 111.00117 * 65.99552 * 3 2 1 14 14 N 1.46503 * 109.47239 * 66.04574 * 13 3 2 15 15 N 1.40153 * 126.23898 * 90.02491 * 14 13 3 16 16 C 1.30387 * 108.02900 * 179.97438 * 15 14 13 17 17 C 1.47931 * 125.72802 * 180.02562 * 16 15 14 18 18 C 1.39556 * 120.08469 * 341.66092 * 17 16 15 19 19 C 1.37859 * 119.91347 * 179.72110 * 18 17 16 20 20 C 1.38865 * 120.08472 * 0.57646 * 19 18 17 21 21 O 1.35846 * 119.92157 * 179.69925 * 20 19 18 22 22 C 1.42908 * 116.99753 * 359.97438 * 21 20 19 23 23 C 1.38876 * 120.16353 * 359.67505 * 20 19 18 24 24 C 1.37854 * 120.07897 * 0.04505 * 23 20 19 25 25 N 1.38077 * 108.53376 * 359.97438 * 16 15 14 26 26 C 1.46507 * 125.86096 * 179.97438 * 25 16 15 27 27 C 1.53004 * 109.46852 * 93.38559 * 26 25 16 28 28 C 1.34784 * 108.27843 * 0.23037 * 25 16 15 29 29 S 1.71210 * 126.17937 * 179.77516 * 28 25 16 30 30 H 1.08998 * 109.47546 * 306.40447 * 1 2 3 31 31 H 1.08999 * 109.47267 * 66.40733 * 1 2 3 32 32 H 1.09007 * 109.47282 * 186.40088 * 1 2 3 33 33 H 1.08995 * 109.47008 * 239.99591 * 2 1 3 34 34 H 1.09005 * 109.46950 * 119.99635 * 2 1 3 35 35 H 1.09005 * 109.47559 * 49.05305 * 4 3 2 36 36 H 1.08998 * 109.47756 * 169.05581 * 4 3 2 37 37 H 0.96991 * 120.00316 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47448 * 306.04585 * 13 3 2 39 39 H 1.09003 * 109.47482 * 186.04892 * 13 3 2 40 40 H 1.07994 * 120.03985 * 359.97438 * 18 17 16 41 41 H 1.07998 * 119.95517 * 180.27137 * 19 18 17 42 42 H 1.09000 * 109.46795 * 299.99954 * 22 21 20 43 43 H 1.08997 * 109.47120 * 59.99878 * 22 21 20 44 44 H 1.09005 * 109.46933 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.95795 * 180.02562 * 23 20 19 46 46 H 1.08002 * 120.03455 * 179.97438 * 24 23 20 47 47 H 1.08997 * 109.46958 * 333.38899 * 26 25 16 48 48 H 1.08992 * 109.47412 * 213.38132 * 26 25 16 49 49 H 1.09001 * 109.47448 * 300.00367 * 27 26 25 50 50 H 1.09006 * 109.47247 * 59.99829 * 27 26 25 51 51 H 1.09000 * 109.47304 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5091 2.1238 -1.1625 5 6 2.1803 1.6182 -2.4135 6 1 2.8535 0.7752 -2.3620 7 6 1.9349 2.2316 -3.6236 8 7 1.1155 3.2584 -3.6862 9 14 2.7674 1.6052 -5.1741 10 1 2.3830 0.1895 -5.4050 11 1 2.3406 2.4300 -6.3329 12 1 4.2411 1.6985 -5.0169 13 6 1.6691 2.0673 1.2528 14 7 2.3882 1.4434 2.3664 15 7 3.6533 1.8103 2.8449 16 6 3.9515 1.0238 3.8413 17 6 5.1995 1.0695 4.6342 18 6 6.3247 1.7238 4.1308 19 6 7.4841 1.7691 4.8753 20 6 7.5370 1.1545 6.1194 21 8 8.6831 1.1959 6.8475 22 6 9.7929 1.8879 6.2716 23 6 6.4209 0.4979 6.6213 24 6 5.2563 0.4533 5.8851 25 7 2.9063 0.1421 4.0325 26 6 2.8446 -0.9075 5.0528 27 6 2.1322 -0.3695 6.2954 28 6 1.9550 0.4090 3.1157 29 16 0.4644 -0.4141 2.9369 30 1 -0.3634 0.6099 0.8271 31 1 -0.3634 0.4113 -0.9417 32 1 -0.3634 -1.0213 0.1146 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.4321 1.9758 -1.2428 36 1 1.7217 3.1859 -1.0401 37 1 0.9426 3.6897 -4.5376 38 1 0.5954 1.9862 1.4226 39 1 1.9476 3.1189 1.1841 40 1 6.2859 2.1975 3.1611 41 1 8.3539 2.2791 4.4883 42 1 10.0633 1.4176 5.3262 43 1 9.5203 2.9284 6.0949 44 1 10.6414 1.8459 6.9546 45 1 6.4656 0.0213 7.5895 46 1 4.3889 -0.0578 6.2760 47 1 3.8557 -1.2157 5.3186 48 1 2.2950 -1.7632 4.6609 49 1 2.6817 0.4864 6.6873 50 1 1.1210 -0.0611 6.0296 51 1 2.0858 -1.1504 7.0543 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058244164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = 109.309393 kcal Electronic energy + Delta-G solvation = -32430.901618 eV Core-core repulsion = 28267.213477 eV Total energy + Delta-G solvation = -4163.688142 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.167 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.70939 -40.60153 -38.25041 -37.47941 -35.84515 -33.32524 -32.46482 -31.70357 -31.28637 -30.15927 -29.34920 -27.97930 -27.29269 -25.43152 -24.37837 -23.68655 -23.23778 -22.84822 -22.24787 -21.14627 -19.70732 -18.74854 -17.94561 -17.00813 -16.81957 -16.57029 -16.29541 -16.26864 -16.08260 -15.51073 -15.34384 -14.97353 -14.87314 -14.39125 -14.16916 -14.05823 -13.70172 -13.49216 -13.28522 -12.89903 -12.80672 -12.68130 -12.40878 -12.28160 -12.04810 -11.88332 -11.80103 -11.59337 -11.49139 -11.26561 -11.18279 -11.11251 -10.96619 -10.79571 -10.73424 -10.56310 -10.30812 -9.93846 -9.73300 -9.59644 -9.32747 -8.67790 -8.43182 -7.42444 -7.42242 -7.10890 -6.03425 -4.04095 0.35340 0.79742 1.23576 1.43603 1.90476 2.36233 2.46964 2.69809 3.23792 3.34427 3.37941 3.41377 3.89192 4.07464 4.24927 4.28898 4.42195 4.42438 4.59096 4.61315 4.65579 4.68986 4.85851 4.89453 4.90237 4.99750 5.02976 5.06792 5.23111 5.33255 5.44231 5.51373 5.55180 5.60900 5.64327 5.76660 5.81779 5.91112 6.02542 6.06677 6.15272 6.26371 6.43042 6.50194 6.78275 6.78707 6.85718 7.09951 7.23040 7.26564 7.40716 7.73717 7.98867 8.11329 8.44288 9.00964 9.59109 11.07251 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.002534 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.096130 B =11046.624955 C =13469.446841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.061 3.939 3 N -0.544 5.544 4 C 0.195 3.805 5 C -0.502 4.502 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.297 3.703 14 N -0.347 5.347 15 N -0.252 5.252 16 C 0.303 3.697 17 C -0.069 4.069 18 C -0.024 4.024 19 C -0.207 4.207 20 C 0.149 3.851 21 O -0.314 6.314 22 C 0.023 3.977 23 C -0.150 4.150 24 C -0.070 4.070 25 N -0.492 5.492 26 C 0.101 3.899 27 C -0.177 4.177 28 C 0.463 3.537 29 S -0.585 6.585 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.010 0.990 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.139 -4.138 25.854 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.067 4.067 3 N -0.269 5.269 4 C 0.071 3.929 5 C -0.541 4.541 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.087 3.913 14 N -0.139 5.139 15 N -0.072 5.072 16 C 0.027 3.973 17 C -0.073 4.073 18 C -0.044 4.044 19 C -0.225 4.225 20 C 0.103 3.897 21 O -0.226 6.226 22 C -0.072 4.072 23 C -0.168 4.168 24 C -0.090 4.090 25 N -0.193 5.193 26 C -0.021 4.021 27 C -0.235 4.235 28 C 0.102 3.898 29 S -0.456 6.456 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.122 0.878 48 H 0.133 0.867 49 H 0.081 0.919 50 H 0.097 0.903 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.957 -3.709 25.037 28.903 hybrid contribution 0.292 -0.224 -0.713 0.802 sum 14.249 -3.933 24.324 28.464 Atomic orbital electron populations 1.22320 0.97589 1.01800 1.01261 1.22090 0.93891 0.89573 1.01168 1.62354 1.60246 1.03337 1.00987 1.19797 0.94567 0.93305 0.85233 1.21001 1.26658 1.15447 0.90975 0.92066 1.24940 0.95435 0.95017 0.99048 1.69930 1.36003 1.21844 1.26006 0.86546 0.79800 0.78763 0.82216 1.20240 1.21331 1.20269 1.22503 0.93188 0.95279 0.80284 1.49819 1.11827 1.25285 1.26974 1.77601 0.98201 1.21133 1.10302 1.22476 0.90847 0.89243 0.94784 1.17316 0.89270 1.06105 0.94582 1.21078 0.90120 0.93717 0.99534 1.21243 1.00136 1.05917 0.95251 1.19276 0.86519 0.93825 0.90123 1.86080 1.19549 1.72086 1.44916 1.23163 0.87316 0.96502 1.00171 1.20316 0.90764 1.03828 1.01918 1.21519 0.98376 0.96692 0.92400 1.46312 1.14096 1.29972 1.28969 1.22238 1.03740 0.89303 0.86774 1.22260 1.02655 1.02242 0.96307 1.23885 0.93642 0.88000 0.84307 1.93349 1.07188 1.60418 1.84681 0.91631 0.92820 0.93318 0.90857 0.92703 0.97247 0.94967 0.92812 0.89187 0.87350 0.83876 0.84314 0.92165 0.92188 0.87911 0.84136 0.83454 0.87821 0.86695 0.91893 0.90253 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 7.69 37.16 0.29 -3.24 16 2 C 0.06 1.31 5.37 -3.82 -0.02 1.29 16 3 N -0.54 -12.04 4.80 -239.98 -1.15 -13.20 16 4 C 0.20 4.99 4.53 -4.98 -0.02 4.97 16 5 C -0.50 -14.09 8.68 -34.44 -0.30 -14.39 16 6 H 0.06 1.73 7.26 -52.49 -0.38 1.35 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.30 5.65 5.83 -63.32 -0.37 5.28 16 14 N -0.35 -6.09 3.58 -65.01 -0.23 -6.32 16 15 N -0.25 -4.02 12.29 32.57 0.40 -3.62 16 16 C 0.30 3.93 7.66 -153.97 -1.18 2.76 16 17 C -0.07 -0.69 5.86 -104.94 -0.61 -1.30 16 18 C -0.02 -0.23 9.68 -39.23 -0.38 -0.60 16 19 C -0.21 -1.55 9.02 -39.49 -0.36 -1.90 16 20 C 0.15 1.12 6.69 -39.11 -0.26 0.86 16 21 O -0.31 -2.19 10.49 -19.26 -0.20 -2.39 16 22 C 0.02 0.09 9.81 101.05 0.99 1.08 16 23 C -0.15 -1.02 9.97 -39.49 -0.39 -1.41 16 24 C -0.07 -0.52 8.49 -39.23 -0.33 -0.85 16 25 N -0.49 -6.35 2.76 -115.19 -0.32 -6.67 16 26 C 0.10 0.88 5.68 -4.04 -0.02 0.86 16 27 C -0.18 -1.25 9.51 37.16 0.35 -0.90 16 28 C 0.46 7.65 6.61 -86.82 -0.57 7.08 16 29 S -0.58 -10.76 24.71 -107.50 -2.66 -13.42 16 30 H 0.06 1.34 4.61 -51.93 -0.24 1.10 16 31 H 0.05 1.20 6.50 -51.93 -0.34 0.86 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.07 1.69 7.16 -51.93 -0.37 1.32 16 34 H 0.05 1.16 5.10 -51.93 -0.26 0.90 16 35 H 0.01 0.26 5.86 -51.93 -0.30 -0.04 16 36 H 0.03 0.87 7.83 -51.93 -0.41 0.46 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.72 5.68 -51.92 -0.29 1.43 16 39 H 0.11 1.97 7.87 -51.93 -0.41 1.56 16 40 H 0.14 1.40 7.93 -52.49 -0.42 0.98 16 41 H 0.14 0.75 6.28 -52.49 -0.33 0.42 16 42 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 43 H 0.06 0.18 7.65 -51.93 -0.40 -0.21 16 44 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.15 0.83 3.04 -52.49 -0.16 0.67 16 47 H 0.10 0.64 5.56 -51.93 -0.29 0.35 16 48 H 0.11 1.11 7.73 -51.93 -0.40 0.71 16 49 H 0.06 0.41 6.97 -51.93 -0.36 0.05 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -34.08 408.93 -12.59 -46.67 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.01 Total: 0.58 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -3.29 Total: 1.08 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.57 Total: -55.49 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: -0.20 Total: -2.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -2.66 Total: -13.42 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.08 -12.59 -46.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058244164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.980 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds