Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46984 * 2 1 4 4 C 1.46897 * 110.99951 * 302.04285 * 3 2 1 5 5 C 1.50704 * 109.47313 * 289.05591 * 4 3 2 6 6 H 1.08000 * 119.99396 * 4.87071 * 5 4 3 7 7 C 1.37871 * 120.00171 * 184.87382 * 5 4 3 8 8 N 1.31513 * 120.00471 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47330 * 59.99596 * 9 7 5 11 11 H 1.48502 * 109.47508 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47199 * 299.99956 * 9 7 5 13 13 C 1.46895 * 111.00117 * 65.99552 * 3 2 1 14 14 N 1.46503 * 109.47239 * 66.04574 * 13 3 2 15 15 N 1.40153 * 126.23898 * 90.02491 * 14 13 3 16 16 C 1.30387 * 108.02900 * 179.97438 * 15 14 13 17 17 C 1.47931 * 125.72802 * 180.02562 * 16 15 14 18 18 C 1.39556 * 120.08469 * 341.66092 * 17 16 15 19 19 C 1.37859 * 119.91347 * 179.72110 * 18 17 16 20 20 C 1.38865 * 120.08472 * 0.57646 * 19 18 17 21 21 O 1.35846 * 119.92157 * 179.69925 * 20 19 18 22 22 C 1.42908 * 116.99753 * 359.97438 * 21 20 19 23 23 C 1.38876 * 120.16353 * 359.67505 * 20 19 18 24 24 C 1.37854 * 120.07897 * 0.04505 * 23 20 19 25 25 N 1.38077 * 108.53376 * 359.97438 * 16 15 14 26 26 C 1.46507 * 125.86096 * 179.97438 * 25 16 15 27 27 C 1.53004 * 109.46852 * 93.38559 * 26 25 16 28 28 C 1.34784 * 108.27843 * 0.23037 * 25 16 15 29 29 S 1.71210 * 126.17937 * 179.77516 * 28 25 16 30 30 H 1.08998 * 109.47546 * 306.40447 * 1 2 3 31 31 H 1.08999 * 109.47267 * 66.40733 * 1 2 3 32 32 H 1.09007 * 109.47282 * 186.40088 * 1 2 3 33 33 H 1.08995 * 109.47008 * 239.99591 * 2 1 3 34 34 H 1.09005 * 109.46950 * 119.99635 * 2 1 3 35 35 H 1.09005 * 109.47559 * 49.05305 * 4 3 2 36 36 H 1.08998 * 109.47756 * 169.05581 * 4 3 2 37 37 H 0.96991 * 120.00316 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47448 * 306.04585 * 13 3 2 39 39 H 1.09003 * 109.47482 * 186.04892 * 13 3 2 40 40 H 1.07994 * 120.03985 * 359.97438 * 18 17 16 41 41 H 1.07998 * 119.95517 * 180.27137 * 19 18 17 42 42 H 1.09000 * 109.46795 * 299.99954 * 22 21 20 43 43 H 1.08997 * 109.47120 * 59.99878 * 22 21 20 44 44 H 1.09005 * 109.46933 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.95795 * 180.02562 * 23 20 19 46 46 H 1.08002 * 120.03455 * 179.97438 * 24 23 20 47 47 H 1.08997 * 109.46958 * 333.38899 * 26 25 16 48 48 H 1.08992 * 109.47412 * 213.38132 * 26 25 16 49 49 H 1.09001 * 109.47448 * 300.00367 * 27 26 25 50 50 H 1.09006 * 109.47247 * 59.99829 * 27 26 25 51 51 H 1.09000 * 109.47304 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5091 2.1238 -1.1625 5 6 2.1803 1.6182 -2.4135 6 1 2.8535 0.7752 -2.3620 7 6 1.9349 2.2316 -3.6236 8 7 1.1155 3.2584 -3.6862 9 14 2.7674 1.6052 -5.1741 10 1 2.3830 0.1895 -5.4050 11 1 2.3406 2.4300 -6.3329 12 1 4.2411 1.6985 -5.0169 13 6 1.6691 2.0673 1.2528 14 7 2.3882 1.4434 2.3664 15 7 3.6533 1.8103 2.8449 16 6 3.9515 1.0238 3.8413 17 6 5.1995 1.0695 4.6342 18 6 6.3247 1.7238 4.1308 19 6 7.4841 1.7691 4.8753 20 6 7.5370 1.1545 6.1194 21 8 8.6831 1.1959 6.8475 22 6 9.7929 1.8879 6.2716 23 6 6.4209 0.4979 6.6213 24 6 5.2563 0.4533 5.8851 25 7 2.9063 0.1421 4.0325 26 6 2.8446 -0.9075 5.0528 27 6 2.1322 -0.3695 6.2954 28 6 1.9550 0.4090 3.1157 29 16 0.4644 -0.4141 2.9369 30 1 -0.3634 0.6099 0.8271 31 1 -0.3634 0.4113 -0.9417 32 1 -0.3634 -1.0213 0.1146 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.4321 1.9758 -1.2428 36 1 1.7217 3.1859 -1.0401 37 1 0.9426 3.6897 -4.5376 38 1 0.5954 1.9862 1.4226 39 1 1.9476 3.1189 1.1841 40 1 6.2859 2.1975 3.1611 41 1 8.3539 2.2791 4.4883 42 1 10.0633 1.4176 5.3262 43 1 9.5203 2.9284 6.0949 44 1 10.6414 1.8459 6.9546 45 1 6.4656 0.0213 7.5895 46 1 4.3889 -0.0578 6.2760 47 1 3.8557 -1.2157 5.3186 48 1 2.2950 -1.7632 4.6609 49 1 2.6817 0.4864 6.6873 50 1 1.1210 -0.0611 6.0296 51 1 2.0858 -1.1504 7.0543 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058244164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = 89.989243 kcal Electronic energy + Delta-G solvation = -32431.739403 eV Core-core repulsion = 28267.213477 eV Total energy + Delta-G solvation = -4164.525926 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.167 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.87693 -41.17156 -39.45092 -38.55312 -36.93768 -34.92115 -34.09610 -32.47015 -32.10540 -31.13441 -30.97382 -29.22258 -28.20753 -26.98566 -25.25295 -25.14604 -24.57947 -23.84994 -23.22820 -22.02869 -21.44530 -19.29691 -19.09055 -18.40600 -18.07878 -17.87956 -17.57579 -16.96710 -16.78038 -16.70459 -16.64957 -16.45737 -16.15415 -15.88382 -15.04863 -14.86446 -14.69764 -14.38958 -14.28221 -14.10284 -13.93095 -13.67938 -13.53704 -13.43776 -13.19402 -13.11793 -12.94232 -12.84171 -12.73077 -12.59670 -12.59218 -12.46985 -12.39753 -12.17194 -11.93940 -11.85252 -11.82274 -11.57812 -11.50142 -11.34385 -10.60140 -10.18393 -9.37877 -9.23173 -8.81399 -8.58157 -8.20583 -6.29439 -0.42439 -0.07237 0.17882 0.21576 0.98922 1.06387 1.36021 1.40013 1.42532 1.50504 2.25773 2.39274 2.58746 2.84217 3.09042 3.15515 3.20319 3.48462 3.69048 3.74867 3.92222 3.93935 4.04712 4.09427 4.15976 4.22686 4.25096 4.29945 4.42002 4.42739 4.44849 4.51198 4.64902 4.69807 4.77520 4.80561 4.87581 4.91454 4.93991 5.00864 5.06339 5.17431 5.18382 5.21668 5.25898 5.32469 5.38607 5.48973 5.52112 5.62144 5.95650 6.00787 6.21558 6.28799 6.40653 6.81220 7.38217 8.89644 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.002534 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.096130 B =11046.624955 C =13469.446841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 N -0.551 5.551 4 C 0.212 3.788 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.270 1.270 13 C 0.306 3.694 14 N -0.359 5.359 15 N -0.289 5.289 16 C 0.325 3.675 17 C -0.095 4.095 18 C -0.033 4.033 19 C -0.207 4.207 20 C 0.152 3.848 21 O -0.322 6.322 22 C 0.013 3.987 23 C -0.147 4.147 24 C -0.056 4.056 25 N -0.481 5.481 26 C 0.089 3.911 27 C -0.170 4.170 28 C 0.464 3.536 29 S -0.632 6.632 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.061 0.939 35 H -0.007 1.007 36 H 0.014 0.986 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.166 0.834 46 H 0.166 0.834 47 H 0.138 0.862 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.050 0.950 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.800 -5.174 28.230 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.056 4.056 3 N -0.276 5.276 4 C 0.087 3.913 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.195 1.195 13 C 0.096 3.904 14 N -0.149 5.149 15 N -0.110 5.110 16 C 0.049 3.951 17 C -0.098 4.098 18 C -0.053 4.053 19 C -0.225 4.225 20 C 0.105 3.895 21 O -0.235 6.235 22 C -0.081 4.081 23 C -0.165 4.165 24 C -0.076 4.076 25 N -0.180 5.180 26 C -0.030 4.030 27 C -0.227 4.227 28 C 0.100 3.900 29 S -0.504 6.504 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.010 0.990 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.175 0.825 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.139 0.861 45 H 0.184 0.816 46 H 0.184 0.816 47 H 0.155 0.845 48 H 0.125 0.875 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.655 -4.765 27.473 32.479 hybrid contribution -0.298 0.111 -1.213 1.254 sum 16.357 -4.654 26.260 31.286 Atomic orbital electron populations 1.22136 0.96944 1.02045 1.00018 1.21948 0.94209 0.89090 1.00334 1.62217 1.60480 1.03490 1.01418 1.19413 0.93323 0.92428 0.86139 1.21257 1.26801 1.15436 0.92332 0.92798 1.25772 0.95936 0.95105 1.02220 1.70040 1.37066 1.22836 1.26945 0.85506 0.78904 0.78353 0.78265 1.19656 1.20518 1.19546 1.22253 0.93401 0.95314 0.79410 1.49522 1.12805 1.25765 1.26841 1.77632 0.97640 1.23128 1.12571 1.23083 0.91102 0.87488 0.93394 1.17415 0.88048 1.08655 0.95721 1.21064 0.90807 0.93947 0.99476 1.21392 1.00026 1.05872 0.95243 1.19497 0.87084 0.93031 0.89894 1.86084 1.19871 1.72285 1.45248 1.23442 0.86883 0.96723 1.01057 1.20626 0.90041 1.03203 1.02680 1.21648 0.99254 0.95629 0.91046 1.46619 1.12895 1.30070 1.28444 1.22726 1.05931 0.88008 0.86286 1.22249 1.00747 1.03688 0.96062 1.23649 0.93752 0.87620 0.85005 1.93356 1.09331 1.61688 1.86013 0.91452 0.94950 0.92560 0.92791 0.92113 0.98977 0.96804 0.92565 0.89448 0.86971 0.85145 0.82526 0.91478 0.91441 0.86053 0.81599 0.81650 0.84481 0.87456 0.90875 0.93092 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.54 7.69 71.98 0.55 -5.98 16 2 C 0.07 3.21 5.37 86.30 0.46 3.68 16 3 N -0.55 -25.37 4.80 -913.15 -4.39 -29.76 16 4 C 0.21 11.34 4.53 85.56 0.39 11.72 16 5 C -0.52 -29.98 8.68 25.60 0.22 -29.76 16 6 H 0.05 3.13 7.26 -2.91 -0.02 3.11 16 7 C 0.01 0.47 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.64 13.29 21.44 0.28 -55.35 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.31 12.16 5.83 170.81 1.00 13.16 16 14 N -0.36 -12.90 3.58 -359.60 -1.29 -14.18 16 15 N -0.29 -9.36 12.29 -50.86 -0.62 -9.98 16 16 C 0.32 8.20 7.66 136.32 1.04 9.24 16 17 C -0.09 -1.71 5.86 -20.07 -0.12 -1.83 16 18 C -0.03 -0.57 9.68 22.50 0.22 -0.35 16 19 C -0.21 -2.63 9.02 22.33 0.20 -2.43 16 20 C 0.15 1.81 6.69 22.57 0.15 1.96 16 21 O -0.32 -3.45 10.49 -91.82 -0.96 -4.42 16 22 C 0.01 0.06 9.81 113.37 1.11 1.17 16 23 C -0.15 -1.44 9.97 22.33 0.22 -1.22 16 24 C -0.06 -0.64 8.49 22.50 0.19 -0.45 16 25 N -0.48 -12.00 2.76 -518.36 -1.43 -13.43 16 26 C 0.09 1.38 5.68 86.38 0.49 1.87 16 27 C -0.17 -1.99 9.51 71.98 0.68 -1.30 16 28 C 0.46 15.49 6.61 179.02 1.18 16.68 16 29 S -0.63 -23.71 24.71 -56.49 -1.40 -25.10 16 30 H 0.07 2.86 4.61 -2.39 -0.01 2.85 16 31 H 0.03 1.50 6.50 -2.39 -0.02 1.48 16 32 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.05 2.58 7.16 -2.39 -0.02 2.56 16 34 H 0.06 2.64 5.10 -2.38 -0.01 2.63 16 35 H -0.01 -0.42 5.86 -2.38 -0.01 -0.43 16 36 H 0.01 0.78 7.83 -2.39 -0.02 0.76 16 37 H 0.27 15.01 8.31 -92.72 -0.77 14.24 16 38 H 0.09 3.51 5.68 -2.38 -0.01 3.49 16 39 H 0.11 4.30 7.87 -2.39 -0.02 4.28 16 40 H 0.13 2.56 7.93 -2.91 -0.02 2.54 16 41 H 0.16 1.32 6.28 -2.91 -0.02 1.31 16 42 H 0.07 0.23 7.65 -2.39 -0.02 0.22 16 43 H 0.07 0.23 7.65 -2.39 -0.02 0.21 16 44 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 45 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.17 1.19 3.04 -2.91 -0.01 1.18 16 47 H 0.14 1.20 5.56 -2.39 -0.01 1.19 16 48 H 0.11 1.92 7.73 -2.39 -0.02 1.90 16 49 H 0.07 0.72 6.97 -2.39 -0.02 0.70 16 50 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 51 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -75.99 408.93 1.66 -74.33 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.67 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 8.46 Total: 17.09 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -7.45 Total: -122.70 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.96 Total: -4.42 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -23.71 SS G_CDS: -1.40 Total: -25.10 kcal Total: -75.99 1.66 -74.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058244164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.316 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds