Wall clock time and date at job start Tue Mar 31 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47289 * 2 1 4 4 C 1.46906 * 110.99962 * 302.43163 * 3 2 1 5 5 C 1.50702 * 109.46910 * 293.95048 * 4 3 2 6 6 H 1.07998 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99951 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47055 * 119.99870 * 9 7 5 12 12 H 1.48500 * 109.47216 * 240.00360 * 9 7 5 13 13 C 1.46902 * 110.99922 * 66.38328 * 3 2 1 14 14 N 1.46498 * 109.47121 * 63.82646 * 13 3 2 15 15 N 1.40148 * 126.24395 * 272.41923 * 14 13 3 16 16 C 1.30376 * 108.03810 * 179.81997 * 15 14 13 17 17 C 1.47938 * 125.73473 * 180.13940 * 16 15 14 18 18 C 1.39514 * 120.15301 * 131.93353 * 17 16 15 19 19 C 1.37943 * 119.88636 * 179.97438 * 18 17 16 20 20 C 1.38388 * 120.19590 * 359.97438 * 19 18 17 21 21 C 1.38270 * 120.30188 * 0.02562 * 20 19 18 22 22 C 1.38255 * 120.11577 * 359.69803 * 21 20 19 23 23 F 1.35103 * 120.09903 * 180.28251 * 22 21 20 24 24 N 1.38089 * 108.53131 * 0.44285 * 16 15 14 25 25 C 1.46495 * 125.86421 * 179.67810 * 24 16 15 26 26 C 1.52998 * 117.50325 * 198.94868 * 25 24 16 27 27 C 1.52999 * 117.50125 * 130.28360 * 25 24 16 28 28 C 1.34797 * 108.27568 * 359.71608 * 24 16 15 29 29 S 1.71202 * 126.17940 * 179.97438 * 28 24 16 30 30 H 1.08997 * 109.47034 * 306.16687 * 1 2 3 31 31 H 1.08999 * 109.46743 * 66.16809 * 1 2 3 32 32 H 1.08998 * 109.47284 * 186.16272 * 1 2 3 33 33 H 1.08995 * 109.47301 * 239.99916 * 2 1 3 34 34 H 1.09000 * 109.47015 * 119.99546 * 2 1 3 35 35 H 1.08998 * 109.46910 * 53.95156 * 4 3 2 36 36 H 1.08998 * 109.47003 * 173.95346 * 4 3 2 37 37 H 0.97000 * 120.00218 * 179.97438 * 8 7 5 38 38 H 1.09006 * 109.47406 * 183.82844 * 13 3 2 39 39 H 1.08998 * 109.47305 * 303.82523 * 13 3 2 40 40 H 1.08003 * 120.05312 * 359.95118 * 18 17 16 41 41 H 1.08008 * 119.90043 * 179.97438 * 19 18 17 42 42 H 1.07995 * 119.84901 * 180.02562 * 20 19 18 43 43 H 1.07999 * 119.94157 * 179.97438 * 21 20 19 44 44 H 1.09005 * 115.54916 * 344.61772 * 25 24 16 45 45 H 1.08997 * 117.49519 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.49969 * 145.02215 * 26 25 24 47 47 H 1.08998 * 117.50509 * 214.98343 * 27 25 24 48 48 H 1.08999 * 117.49657 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5017 2.1265 -1.1576 5 6 2.0739 1.5440 -2.4242 6 1 2.7539 0.7064 -2.3743 7 6 1.7285 2.0796 -3.6468 8 7 0.9000 3.0992 -3.7076 9 14 2.4371 1.3571 -5.2168 10 1 3.3362 0.2245 -4.8788 11 1 1.3317 0.8701 -6.0806 12 1 3.2065 2.4018 -5.9393 13 6 1.6772 2.0644 1.2566 14 7 2.3621 1.4046 2.3709 15 7 1.8862 0.3090 3.1040 16 6 2.7780 0.0091 4.0065 17 6 2.6740 -1.0888 4.9926 18 6 3.7433 -1.9648 5.1814 19 6 3.6406 -2.9863 6.1027 20 6 2.4803 -3.1443 6.8403 21 6 1.4157 -2.2807 6.6596 22 6 1.5071 -1.2491 5.7437 23 9 0.4687 -0.4020 5.5714 24 7 3.8329 0.8928 3.8918 25 6 5.0380 0.9035 4.7246 26 6 5.8676 2.1887 4.7505 27 6 6.3900 0.9548 4.0103 28 6 3.5630 1.7445 2.8824 29 16 4.5635 3.0264 2.3469 30 1 -0.3633 0.6064 0.8296 31 1 -0.3633 0.4152 -0.9401 32 1 -0.3634 -1.0217 0.1103 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.4147 2.0501 -1.1812 36 1 1.7907 3.1744 -1.0767 37 1 0.6572 3.4763 -4.5677 38 1 1.9911 3.1070 1.2033 39 1 0.5996 2.0171 1.4132 40 1 4.6498 -1.8435 4.6070 41 1 4.4681 -3.6648 6.2488 42 1 2.4061 -3.9457 7.5604 43 1 0.5128 -2.4096 7.2380 44 1 4.9775 0.3249 5.6465 45 1 5.5170 3.0262 4.1474 46 1 6.3533 2.4555 5.6891 47 1 7.2191 0.4104 4.4623 48 1 6.3828 0.9802 2.9206 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058244184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:53 Heat of formation + Delta-G solvation = 130.834153 kcal Electronic energy + Delta-G solvation = -32603.355379 eV Core-core repulsion = 28317.140316 eV Total energy + Delta-G solvation = -4286.215063 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.35528 -42.73779 -39.47697 -38.08862 -37.11153 -34.09870 -32.75252 -32.45074 -31.45494 -30.81842 -29.40683 -27.66393 -25.57620 -24.77778 -23.72752 -23.32838 -22.78983 -22.59017 -22.09036 -21.22568 -19.82960 -18.42005 -17.90516 -17.05884 -16.81835 -16.67765 -16.33388 -16.14533 -15.97933 -15.54284 -15.23572 -14.97298 -14.85667 -14.72809 -14.44637 -14.09913 -13.71885 -13.42716 -13.10634 -13.00876 -12.63732 -12.46921 -12.18367 -12.09694 -11.92701 -11.85294 -11.79224 -11.62394 -11.24873 -11.13673 -11.06268 -10.86372 -10.72830 -10.68027 -10.60857 -10.10407 -10.00158 -9.88018 -9.60758 -9.30905 -9.26361 -8.44970 -7.53377 -7.34319 -6.97206 -6.03883 -4.04648 0.15211 0.55764 1.17024 1.36558 1.60146 2.23397 2.42133 2.91835 3.32215 3.39879 3.44729 3.57094 3.58909 3.70484 4.06169 4.16871 4.28611 4.38416 4.41998 4.53138 4.59451 4.66271 4.78589 4.82173 5.05149 5.18281 5.28332 5.32812 5.38585 5.41778 5.51732 5.55129 5.58789 5.68806 5.71661 5.73588 5.92065 5.98519 6.04771 6.10572 6.16476 6.35235 6.39183 6.49680 6.60997 6.82397 7.11649 7.17202 7.27113 7.71343 7.95066 8.06882 8.41729 9.00879 9.58995 11.07002 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.002858 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.801993 B = 9796.009690 C =11119.159387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 N -0.537 5.537 4 C 0.197 3.803 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.300 3.700 14 N -0.351 5.351 15 N -0.245 5.245 16 C 0.298 3.702 17 C -0.067 4.067 18 C -0.058 4.058 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.154 4.154 22 C 0.147 3.853 23 F -0.121 7.121 24 N -0.461 5.461 25 C 0.043 3.957 26 C -0.185 4.185 27 C -0.166 4.166 28 C 0.471 3.529 29 S -0.564 6.564 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.006 0.994 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.164 0.836 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -13.523 26.801 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.069 4.069 3 N -0.263 5.263 4 C 0.073 3.927 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.209 1.209 13 C 0.091 3.909 14 N -0.143 5.143 15 N -0.066 5.066 16 C 0.021 3.979 17 C -0.071 4.071 18 C -0.077 4.077 19 C -0.147 4.147 20 C -0.086 4.086 21 C -0.173 4.173 22 C 0.126 3.874 23 F -0.099 7.099 24 N -0.160 5.160 25 C -0.059 4.059 26 C -0.224 4.224 27 C -0.205 4.205 28 C 0.111 3.889 29 S -0.433 6.433 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.181 0.819 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.397 -12.748 25.711 29.033 hybrid contribution -0.686 -0.792 -0.358 1.107 sum 3.711 -13.540 25.353 28.980 Atomic orbital electron populations 1.22306 0.98628 1.00931 1.02224 1.22012 0.92737 0.90703 1.01406 1.62304 1.60095 1.02799 1.01075 1.19790 0.93923 0.93822 0.85146 1.21054 1.27149 1.16291 0.89601 0.91872 1.24940 0.95239 0.95074 0.99159 1.69955 1.34510 1.23828 1.25340 0.86430 0.78800 0.79112 0.83028 1.19718 1.21166 1.20907 1.22535 0.93581 0.95276 0.79517 1.49825 1.14140 1.23192 1.27184 1.77659 1.20126 1.03363 1.05413 1.22131 0.85545 0.93534 0.96718 1.17463 0.96074 0.95932 0.97628 1.21199 0.97093 0.92659 0.96791 1.21175 0.98878 0.98236 0.96383 1.21267 0.91908 0.97641 0.97783 1.21172 1.01498 0.95090 0.99567 1.17651 0.83795 0.89963 0.96038 1.91597 1.55524 1.68728 1.94101 1.45495 1.17927 1.24508 1.28104 1.22081 0.80010 1.08178 0.95680 1.24683 0.99044 0.95112 1.03594 1.23421 0.93180 1.01852 1.02014 1.23788 0.88398 0.92080 0.84617 1.93117 1.51140 1.24899 1.74095 0.93797 0.90915 0.93304 0.89824 0.93174 0.97587 0.94528 0.92899 0.85657 0.91017 0.84152 0.84153 0.84144 0.83644 0.83850 0.81910 0.88271 0.87627 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 9.15 37.16 0.34 -3.04 16 2 C 0.06 1.21 5.72 -3.82 -0.02 1.19 16 3 N -0.54 -11.84 4.85 -239.98 -1.16 -13.01 16 4 C 0.20 5.04 4.43 -4.97 -0.02 5.02 16 5 C -0.50 -14.06 8.55 -34.44 -0.29 -14.35 16 6 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.30 5.80 5.79 -63.31 -0.37 5.43 16 14 N -0.35 -6.30 3.33 -65.01 -0.22 -6.52 16 15 N -0.25 -3.98 11.01 32.58 0.36 -3.62 16 16 C 0.30 4.04 7.08 -153.96 -1.09 2.95 16 17 C -0.07 -0.66 5.53 -104.90 -0.58 -1.24 16 18 C -0.06 -0.39 8.48 -39.21 -0.33 -0.72 16 19 C -0.13 -0.57 10.03 -39.63 -0.40 -0.96 16 20 C -0.07 -0.28 10.04 -39.51 -0.40 -0.67 16 21 C -0.15 -0.94 10.01 -39.56 -0.40 -1.33 16 22 C 0.15 1.39 7.28 -39.03 -0.28 1.10 16 23 F -0.12 -1.45 16.66 2.25 0.04 -1.41 16 24 N -0.46 -6.40 3.12 -108.11 -0.34 -6.74 16 25 C 0.04 0.44 5.94 -67.93 -0.40 0.04 16 26 C -0.18 -2.01 9.66 -26.69 -0.26 -2.27 16 27 C -0.17 -1.69 9.89 -26.69 -0.26 -1.95 16 28 C 0.47 8.26 7.67 -86.80 -0.67 7.59 16 29 S -0.56 -11.08 25.14 -107.50 -2.70 -13.79 16 30 H 0.04 0.78 6.23 -51.93 -0.32 0.46 16 31 H 0.07 1.51 6.59 -51.93 -0.34 1.17 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.82 6.93 -51.93 -0.36 1.46 16 34 H 0.05 0.97 6.30 -51.93 -0.33 0.65 16 35 H 0.01 0.17 6.07 -51.93 -0.32 -0.15 16 36 H 0.04 1.01 7.96 -51.93 -0.41 0.60 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.51 7.42 -51.93 -0.39 2.12 16 39 H 0.07 1.31 6.21 -51.93 -0.32 0.99 16 40 H 0.14 0.85 7.69 -52.48 -0.40 0.45 16 41 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 42 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 43 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.14 1.03 7.12 -51.93 -0.37 0.66 16 45 H 0.16 2.36 4.37 -26.28 -0.11 2.25 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.11 1.52 7.52 -51.93 -0.39 1.13 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -33.76 403.38 -13.87 -47.63 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.11 Total: 1.90 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -5.53 Total: -1.70 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.62 Total: -55.60 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -2.70 Total: -13.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.76 -13.87 -47.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058244184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.462 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds