Wall clock time and date at job start Tue Mar 31 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 117.00025 * 2 1 4 4 C 1.38707 * 119.97286 * 179.97438 * 3 2 1 5 5 C 1.38092 * 120.01952 * 180.27537 * 4 3 2 6 6 C 1.38915 * 119.97618 * 359.49482 * 5 4 3 7 7 S 1.76202 * 120.02586 * 180.25310 * 6 5 4 8 8 C 1.81399 * 102.99901 * 6.10718 * 7 6 5 9 9 H 1.09002 * 109.47101 * 308.88125 * 8 7 6 10 10 C 1.53000 * 109.47312 * 188.88147 * 8 7 6 11 11 C 1.50704 * 109.47433 * 68.88432 * 8 7 6 12 12 O 1.21292 * 119.99785 * 24.99719 * 11 8 7 13 13 N 1.34772 * 119.99975 * 205.00218 * 11 8 7 14 14 C 1.39476 * 119.99981 * 179.97438 * 13 11 8 15 15 C 1.36106 * 126.21294 * 359.68366 * 14 13 11 16 16 C 1.39756 * 107.82737 * 179.90619 * 15 14 13 17 17 C 1.50697 * 125.84154 * 180.14198 * 16 15 14 18 18 N 1.30848 * 108.32274 * 0.36960 * 16 15 14 19 19 N 1.35259 * 126.21572 * 180.02562 * 14 13 11 20 20 C 1.46499 * 126.04818 * 359.96184 * 19 14 13 21 21 C 1.50692 * 109.47384 * 90.00245 * 20 19 14 22 22 H 1.08003 * 119.99813 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00144 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47526 * 90.00217 * 25 23 21 27 27 H 1.48503 * 109.47159 * 210.00092 * 25 23 21 28 28 H 1.48498 * 109.47505 * 329.99928 * 25 23 21 29 29 C 1.38913 * 119.95290 * 0.50408 * 6 5 4 30 30 C 1.38099 * 119.97347 * 359.75070 * 29 6 5 31 31 H 1.08998 * 109.47076 * 59.99991 * 1 2 3 32 32 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46917 * 299.99818 * 1 2 3 34 34 H 1.07996 * 119.99287 * 0.02562 * 4 3 2 35 35 H 1.08006 * 120.01015 * 179.72824 * 5 4 3 36 36 H 1.09003 * 109.47439 * 180.18184 * 10 8 7 37 37 H 1.09000 * 109.47353 * 300.18832 * 10 8 7 38 38 H 1.08998 * 109.46727 * 60.18342 * 10 8 7 39 39 H 0.97002 * 120.00356 * 0.02562 * 13 11 8 40 40 H 1.08004 * 126.09220 * 0.02562 * 15 14 13 41 41 H 1.08993 * 109.47482 * 270.24114 * 17 16 15 42 42 H 1.09006 * 109.47234 * 30.24252 * 17 16 15 43 43 H 1.09003 * 109.47387 * 150.23545 * 17 16 15 44 44 H 1.09004 * 109.46876 * 210.00652 * 20 19 14 45 45 H 1.08997 * 109.46901 * 330.00050 * 20 19 14 46 46 H 0.96995 * 119.99956 * 179.97438 * 24 23 21 47 47 H 1.07996 * 120.02162 * 179.72764 * 29 6 5 48 48 H 1.07997 * 119.98612 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0597 2.5137 0.0063 6 6 3.3036 3.6790 0.0009 7 16 4.1035 5.2490 0.0015 8 6 5.8554 4.8144 -0.1782 9 1 6.1220 4.0646 0.5666 10 6 6.7145 6.0639 0.0259 11 6 6.0963 4.2593 -1.5584 12 8 5.3579 4.5628 -2.4716 13 7 7.1322 3.4255 -1.7781 14 6 7.3548 2.9113 -3.0553 15 6 6.6063 3.1608 -4.1643 16 6 7.1712 2.4544 -5.2297 17 6 6.6652 2.4447 -6.6491 18 7 8.2119 1.7991 -4.7829 19 7 8.3500 2.0690 -3.4154 20 6 9.3886 1.5339 -2.5316 21 6 8.9137 0.2387 -1.9251 22 1 7.9358 -0.1471 -2.1728 23 6 9.7276 -0.4539 -1.0539 24 7 10.9182 0.0162 -0.7518 25 14 9.1386 -2.0590 -0.3015 26 1 9.5333 -3.1908 -1.1781 27 1 9.7544 -2.2328 1.0386 28 1 7.6601 -2.0294 -0.1668 29 6 1.9164 3.6058 0.0004 30 6 1.2905 2.3748 -0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0194 0.3777 0.0005 35 1 5.1383 2.5695 0.0111 36 1 7.7670 5.8034 -0.0853 37 1 6.4456 6.8150 -0.7169 38 1 6.5427 6.4636 1.0253 39 1 7.7224 3.1824 -1.0477 40 1 5.7325 3.7937 -4.2130 41 1 5.9427 1.6378 -6.7718 42 1 6.1859 3.3983 -6.8706 43 1 7.5009 2.2910 -7.3318 44 1 10.2974 1.3545 -3.1060 45 1 9.5960 2.2520 -1.7384 46 1 11.4906 -0.4708 -0.1387 47 1 1.3275 4.5111 0.0006 48 1 0.2120 2.3176 -0.0001 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:20 Heat of formation + Delta-G solvation = 34.677866 kcal Electronic energy + Delta-G solvation = -31985.653764 eV Core-core repulsion = 27748.322173 eV Total energy + Delta-G solvation = -4237.331591 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.93558 -40.16427 -39.32183 -37.46510 -34.79938 -33.82226 -33.43022 -32.05842 -31.26117 -30.39669 -29.17371 -28.23128 -27.49745 -26.06538 -25.17045 -23.05169 -22.74278 -22.35309 -21.41081 -19.81671 -19.34286 -18.44700 -17.41552 -17.04834 -16.88232 -16.62596 -16.30976 -15.90068 -15.52832 -15.46591 -14.85857 -14.69128 -14.52546 -14.05989 -14.02050 -13.97529 -13.58806 -13.19400 -13.06092 -12.96047 -12.79443 -12.63068 -12.52066 -12.27511 -12.14907 -12.01977 -11.79433 -11.59636 -11.57397 -11.45958 -11.13966 -11.09878 -10.91781 -10.47148 -10.38387 -10.35388 -9.93890 -9.84016 -9.53073 -9.25189 -9.13686 -8.75012 -7.94580 -7.47399 -7.28106 -6.36555 -4.45133 1.08705 1.18611 1.28210 2.04820 2.24578 2.80528 3.04942 3.11901 3.14865 3.22116 3.26526 3.55180 3.56995 3.72858 4.21646 4.38426 4.52109 4.59000 4.65261 4.74268 4.86715 4.91725 4.96974 5.09001 5.22811 5.28069 5.30852 5.34725 5.38057 5.42460 5.61656 5.77658 5.83110 5.92591 6.03241 6.13616 6.14460 6.14714 6.15267 6.22578 6.38521 6.50113 6.63209 6.80052 7.01173 7.22037 7.46341 7.53711 7.58538 7.76419 7.85403 8.21193 8.59079 8.68206 9.22847 10.70532 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.006277 B = 0.003585 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4459.774219 B = 7807.607632 C = 9229.445920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.124 4.124 5 C -0.086 4.086 6 C -0.122 4.122 7 S -0.050 6.050 8 C -0.108 4.108 9 H 0.117 0.883 10 C -0.129 4.129 11 C 0.516 3.484 12 O -0.486 6.486 13 N -0.635 5.635 14 C 0.302 3.698 15 C -0.293 4.293 16 C 0.051 3.949 17 C -0.062 4.062 18 N -0.284 5.284 19 N -0.343 5.343 20 C 0.257 3.743 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.890 5.890 25 Si 0.903 3.097 26 H -0.276 1.276 27 H -0.283 1.283 28 H -0.271 1.271 29 C -0.059 4.059 30 C -0.190 4.190 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.161 0.839 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.269 0.731 47 H 0.130 0.870 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 9.240 4.721 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.075 3.925 4 C -0.144 4.144 5 C -0.109 4.109 6 C -0.235 4.235 7 S 0.194 5.806 8 C -0.240 4.240 9 H 0.135 0.865 10 C -0.188 4.188 11 C 0.298 3.702 12 O -0.358 6.358 13 N -0.283 5.283 14 C 0.079 3.921 15 C -0.325 4.325 16 C -0.114 4.114 17 C -0.121 4.121 18 N -0.110 5.110 19 N -0.129 5.129 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.135 4.135 24 N -0.527 5.527 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 C -0.083 4.083 30 C -0.211 4.211 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.252 0.748 40 H 0.178 0.822 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.148 0.852 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.150 9.610 4.123 19.240 hybrid contribution -0.051 -1.910 1.101 2.205 sum -16.202 7.701 5.224 18.684 Atomic orbital electron populations 1.23058 0.78509 1.03951 1.01284 1.86129 1.21288 1.26795 1.88722 1.18993 0.92231 0.84199 0.97034 1.20381 0.91545 0.98522 1.03966 1.20952 0.99413 0.91085 0.99489 1.21600 0.96858 0.96750 1.08248 1.85175 0.98555 1.06328 1.90545 1.23728 0.98561 1.03958 0.97777 0.86497 1.21561 0.98887 0.94216 1.04133 1.20276 0.80433 0.78859 0.90675 1.90701 1.44850 1.56768 1.43450 1.42699 1.30539 1.45907 1.09163 1.17876 0.93169 0.95293 0.85761 1.21256 1.07149 1.13826 0.90247 1.22019 0.95063 0.97464 0.96819 1.20020 1.00492 1.02169 0.89428 1.77361 1.20772 1.23480 0.89343 1.49346 1.22721 1.33955 1.06852 1.19616 0.85010 0.94535 0.86940 1.21334 1.03203 1.06291 1.27068 0.91707 1.24917 0.94548 0.98146 0.95931 1.69912 1.08583 1.39406 1.34814 0.86394 0.79150 0.83001 0.78452 1.20154 1.20807 1.19587 1.20456 0.91972 0.97431 0.98451 1.21115 0.99913 0.91822 1.08226 0.92594 0.88255 0.92691 0.84564 0.85687 0.89938 0.90615 0.89869 0.74768 0.82198 0.91325 0.91145 0.91536 0.92545 0.93892 0.92143 0.85204 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.99 10.50 -19.77 -0.21 -4.20 16 3 C 0.12 1.64 6.69 -39.23 -0.26 1.38 16 4 C -0.12 -1.83 9.98 -39.46 -0.39 -2.22 16 5 C -0.09 -1.25 8.83 -39.38 -0.35 -1.60 16 6 C -0.12 -1.65 6.04 -39.08 -0.24 -1.89 16 7 S -0.05 -0.61 20.62 -107.50 -2.22 -2.83 16 8 C -0.11 -1.26 2.41 -27.88 -0.07 -1.33 16 9 H 0.12 1.20 6.91 -51.92 -0.36 0.84 16 10 C -0.13 -1.19 9.18 37.16 0.34 -0.84 16 11 C 0.52 8.02 5.38 -10.99 -0.06 7.96 16 12 O -0.49 -8.90 13.27 5.55 0.07 -8.82 16 13 N -0.64 -10.84 5.42 -11.46 -0.06 -10.90 16 14 C 0.30 6.29 7.66 -153.16 -1.17 5.12 16 15 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 16 C 0.05 1.04 7.21 -82.45 -0.59 0.44 16 17 C -0.06 -0.95 10.44 36.00 0.38 -0.57 16 18 N -0.28 -6.63 12.56 33.65 0.42 -6.20 16 19 N -0.34 -7.97 3.60 -61.58 -0.22 -8.20 16 20 C 0.26 6.32 6.01 -5.20 -0.03 6.29 16 21 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 22 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 25 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 C -0.06 -0.71 9.79 -39.38 -0.39 -1.10 16 30 C -0.19 -2.18 9.03 -39.46 -0.36 -2.54 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.13 1.79 5.12 -52.48 -0.27 1.52 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.42 6.48 7.97 -40.82 -0.33 6.16 16 40 H 0.16 3.25 5.83 -52.48 -0.31 2.94 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 48 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 LS Contribution 415.29 15.07 6.26 6.26 Total: -1.00 -32.69 415.29 -9.78 -42.48 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.55 Total: 9.20 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.00 Total: -9.06 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.88 Total: -48.56 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.13 Total: -13.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.22 Total: -2.83 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.69 -9.78 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.157 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds