Wall clock time and date at job start Tue Mar 31 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 117.00025 * 2 1 4 4 C 1.38707 * 119.97286 * 179.97438 * 3 2 1 5 5 C 1.38092 * 120.01952 * 180.27537 * 4 3 2 6 6 C 1.38915 * 119.97618 * 359.49482 * 5 4 3 7 7 S 1.76202 * 120.02586 * 180.25310 * 6 5 4 8 8 C 1.81399 * 102.99901 * 6.10718 * 7 6 5 9 9 H 1.09002 * 109.47101 * 308.88125 * 8 7 6 10 10 C 1.53000 * 109.47312 * 188.88147 * 8 7 6 11 11 C 1.50704 * 109.47433 * 68.88432 * 8 7 6 12 12 O 1.21292 * 119.99785 * 24.99719 * 11 8 7 13 13 N 1.34772 * 119.99975 * 205.00218 * 11 8 7 14 14 C 1.39476 * 119.99981 * 179.97438 * 13 11 8 15 15 C 1.36106 * 126.21294 * 359.68366 * 14 13 11 16 16 C 1.39756 * 107.82737 * 179.90619 * 15 14 13 17 17 C 1.50697 * 125.84154 * 180.14198 * 16 15 14 18 18 N 1.30848 * 108.32274 * 0.36960 * 16 15 14 19 19 N 1.35259 * 126.21572 * 180.02562 * 14 13 11 20 20 C 1.46499 * 126.04818 * 359.96184 * 19 14 13 21 21 C 1.50692 * 109.47384 * 90.00245 * 20 19 14 22 22 H 1.08003 * 119.99813 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00144 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47526 * 90.00217 * 25 23 21 27 27 H 1.48503 * 109.47159 * 210.00092 * 25 23 21 28 28 H 1.48498 * 109.47505 * 329.99928 * 25 23 21 29 29 C 1.38913 * 119.95290 * 0.50408 * 6 5 4 30 30 C 1.38099 * 119.97347 * 359.75070 * 29 6 5 31 31 H 1.08998 * 109.47076 * 59.99991 * 1 2 3 32 32 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46917 * 299.99818 * 1 2 3 34 34 H 1.07996 * 119.99287 * 0.02562 * 4 3 2 35 35 H 1.08006 * 120.01015 * 179.72824 * 5 4 3 36 36 H 1.09003 * 109.47439 * 180.18184 * 10 8 7 37 37 H 1.09000 * 109.47353 * 300.18832 * 10 8 7 38 38 H 1.08998 * 109.46727 * 60.18342 * 10 8 7 39 39 H 0.97002 * 120.00356 * 0.02562 * 13 11 8 40 40 H 1.08004 * 126.09220 * 0.02562 * 15 14 13 41 41 H 1.08993 * 109.47482 * 270.24114 * 17 16 15 42 42 H 1.09006 * 109.47234 * 30.24252 * 17 16 15 43 43 H 1.09003 * 109.47387 * 150.23545 * 17 16 15 44 44 H 1.09004 * 109.46876 * 210.00652 * 20 19 14 45 45 H 1.08997 * 109.46901 * 330.00050 * 20 19 14 46 46 H 0.96995 * 119.99956 * 179.97438 * 24 23 21 47 47 H 1.07996 * 120.02162 * 179.72764 * 29 6 5 48 48 H 1.07997 * 119.98612 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0597 2.5137 0.0063 6 6 3.3036 3.6790 0.0009 7 16 4.1035 5.2490 0.0015 8 6 5.8554 4.8144 -0.1782 9 1 6.1220 4.0646 0.5666 10 6 6.7145 6.0639 0.0259 11 6 6.0963 4.2593 -1.5584 12 8 5.3579 4.5628 -2.4716 13 7 7.1322 3.4255 -1.7781 14 6 7.3548 2.9113 -3.0553 15 6 6.6063 3.1608 -4.1643 16 6 7.1712 2.4544 -5.2297 17 6 6.6652 2.4447 -6.6491 18 7 8.2119 1.7991 -4.7829 19 7 8.3500 2.0690 -3.4154 20 6 9.3886 1.5339 -2.5316 21 6 8.9137 0.2387 -1.9251 22 1 7.9358 -0.1471 -2.1728 23 6 9.7276 -0.4539 -1.0539 24 7 10.9182 0.0162 -0.7518 25 14 9.1386 -2.0590 -0.3015 26 1 9.5333 -3.1908 -1.1781 27 1 9.7544 -2.2328 1.0386 28 1 7.6601 -2.0294 -0.1668 29 6 1.9164 3.6058 0.0004 30 6 1.2905 2.3748 -0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0194 0.3777 0.0005 35 1 5.1383 2.5695 0.0111 36 1 7.7670 5.8034 -0.0853 37 1 6.4456 6.8150 -0.7169 38 1 6.5427 6.4636 1.0253 39 1 7.7224 3.1824 -1.0477 40 1 5.7325 3.7937 -4.2130 41 1 5.9427 1.6378 -6.7718 42 1 6.1859 3.3983 -6.8706 43 1 7.5009 2.2910 -7.3318 44 1 10.2974 1.3545 -3.1060 45 1 9.5960 2.2520 -1.7384 46 1 11.4906 -0.4708 -0.1387 47 1 1.3275 4.5111 0.0006 48 1 0.2120 2.3176 -0.0001 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:19 Heat of formation + Delta-G solvation = 16.149452 kcal Electronic energy + Delta-G solvation = -31986.457216 eV Core-core repulsion = 27748.322173 eV Total energy + Delta-G solvation = -4238.135043 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49435 -41.10500 -40.71799 -38.39241 -36.32992 -35.64386 -34.47072 -33.80507 -32.22513 -31.33475 -30.78909 -29.81050 -28.19941 -27.84009 -26.17762 -24.79405 -23.91379 -23.29415 -22.73946 -21.34689 -20.79963 -19.37625 -18.93255 -18.59139 -18.20021 -18.05552 -17.31268 -16.84166 -16.77720 -16.69437 -16.36353 -16.09394 -15.80246 -15.49250 -15.40442 -14.84838 -14.61326 -14.60119 -14.46328 -14.07976 -14.03173 -13.96392 -13.71630 -13.48130 -13.38024 -13.13999 -13.08295 -12.95650 -12.87448 -12.75346 -12.40697 -12.32723 -12.29305 -12.02787 -11.95597 -11.72132 -11.52109 -11.33904 -10.97163 -10.78992 -10.18719 -10.14638 -9.66638 -9.11131 -8.39310 -8.24078 -6.56139 0.08932 0.19050 0.29954 0.72587 1.04252 1.32600 1.35191 1.42380 1.45970 1.58692 2.00849 2.14158 2.30906 2.31562 2.55587 2.91398 3.18798 3.61353 3.68698 3.71957 3.80446 3.86017 4.10288 4.19568 4.21362 4.38021 4.39784 4.45626 4.57678 4.60551 4.65935 4.69207 4.70947 4.80192 4.83187 4.85932 4.86711 4.92626 4.94648 5.08333 5.14111 5.18152 5.18459 5.20440 5.48539 5.54535 5.74387 5.92696 6.07664 6.20571 6.34970 6.53807 6.83628 6.99128 7.15913 8.67177 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.006277 B = 0.003585 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4459.774219 B = 7807.607632 C = 9229.445920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.116 3.884 4 C -0.153 4.153 5 C -0.101 4.101 6 C -0.140 4.140 7 S -0.035 6.035 8 C -0.104 4.104 9 H 0.132 0.868 10 C -0.127 4.127 11 C 0.519 3.481 12 O -0.513 6.513 13 N -0.634 5.634 14 C 0.302 3.698 15 C -0.306 4.306 16 C 0.058 3.942 17 C -0.061 4.061 18 N -0.330 5.330 19 N -0.365 5.365 20 C 0.273 3.727 21 C -0.555 4.555 22 H 0.045 0.955 23 C 0.033 3.967 24 N -0.911 5.911 25 Si 0.961 3.039 26 H -0.276 1.276 27 H -0.267 1.267 28 H -0.273 1.273 29 C -0.060 4.060 30 C -0.182 4.182 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.421 0.579 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.050 0.950 46 H 0.275 0.725 47 H 0.155 0.845 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 10.075 5.594 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.173 4.173 5 C -0.124 4.124 6 C -0.252 4.252 7 S 0.209 5.791 8 C -0.237 4.237 9 H 0.150 0.850 10 C -0.186 4.186 11 C 0.303 3.697 12 O -0.386 6.386 13 N -0.282 5.282 14 C 0.080 3.920 15 C -0.338 4.338 16 C -0.107 4.107 17 C -0.119 4.119 18 N -0.155 5.155 19 N -0.150 5.150 20 C 0.154 3.846 21 C -0.593 4.593 22 H 0.063 0.937 23 C -0.169 4.169 24 N -0.549 5.549 25 Si 0.785 3.215 26 H -0.202 1.202 27 H -0.192 1.192 28 H -0.198 1.198 29 C -0.083 4.083 30 C -0.202 4.202 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.259 0.741 40 H 0.183 0.817 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.173 0.827 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.352 10.461 5.015 21.712 hybrid contribution 0.513 -2.143 0.792 2.341 sum -17.839 8.318 5.807 20.522 Atomic orbital electron populations 1.23406 0.76037 1.05714 1.02654 1.86102 1.23929 1.26699 1.88603 1.19102 0.91917 0.85292 0.96813 1.20429 0.92736 0.98203 1.05976 1.20943 0.99280 0.91629 1.00592 1.21840 0.97820 0.96937 1.08649 1.85065 0.98398 1.05369 1.90277 1.23836 0.99180 1.05446 0.95195 0.84995 1.21651 0.98676 0.92700 1.05554 1.21018 0.79098 0.77630 0.91976 1.90672 1.45518 1.57539 1.44855 1.42874 1.31257 1.46081 1.08019 1.18234 0.92202 0.94230 0.87368 1.21438 1.07452 1.14433 0.90470 1.22858 0.93528 0.95385 0.98887 1.20221 1.01217 1.04153 0.86339 1.77310 1.22845 1.25663 0.89650 1.49156 1.23456 1.35344 1.07067 1.19227 0.84455 0.94225 0.86690 1.21370 1.02582 1.07447 1.27883 0.93708 1.25583 0.94530 1.00829 0.95981 1.69973 1.09245 1.40565 1.35100 0.85507 0.78550 0.79175 0.78224 1.20181 1.19170 1.19772 1.20849 0.91578 0.98680 0.97206 1.21459 1.01484 0.90768 1.06513 0.91475 0.86518 0.90910 0.86124 0.86427 0.89189 0.91034 0.87244 0.74124 0.81725 0.89872 0.88622 0.90520 0.95432 0.93236 0.91586 0.82706 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.34 10.50 -93.64 -0.98 -9.33 16 3 C 0.12 3.06 6.69 22.49 0.15 3.21 16 4 C -0.15 -4.69 9.98 22.35 0.22 -4.46 16 5 C -0.10 -2.99 8.83 22.40 0.20 -2.79 16 6 C -0.14 -3.66 6.04 22.59 0.14 -3.52 16 7 S -0.04 -0.81 20.62 -56.49 -1.16 -1.98 16 8 C -0.10 -2.33 2.41 29.85 0.07 -2.26 16 9 H 0.13 2.59 6.91 -2.39 -0.02 2.57 16 10 C -0.13 -2.09 9.18 71.98 0.66 -1.43 16 11 C 0.52 16.06 5.38 87.66 0.47 16.53 16 12 O -0.51 -18.68 13.27 -3.07 -0.04 -18.72 16 13 N -0.63 -22.03 5.42 -308.56 -1.67 -23.70 16 14 C 0.30 12.94 7.66 131.32 1.01 13.95 16 15 C -0.31 -12.75 9.58 22.14 0.21 -12.54 16 16 C 0.06 2.39 7.21 43.07 0.31 2.70 16 17 C -0.06 -1.76 10.44 71.23 0.74 -1.01 16 18 N -0.33 -15.81 12.56 -47.45 -0.60 -16.41 16 19 N -0.36 -17.57 3.60 -348.73 -1.26 -18.83 16 20 C 0.27 14.00 6.01 85.63 0.51 14.51 16 21 C -0.55 -30.34 9.39 25.60 0.24 -30.10 16 22 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 23 C 0.03 1.74 5.46 84.65 0.46 2.21 16 24 N -0.91 -49.52 13.29 21.45 0.28 -49.24 16 25 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 C -0.06 -1.31 9.79 22.40 0.22 -1.09 16 30 C -0.18 -3.79 9.03 22.35 0.20 -3.59 16 31 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 34 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.12 3.49 5.12 -2.91 -0.01 3.48 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 13.45 7.97 -92.71 -0.74 12.71 16 40 H 0.17 6.69 5.83 -2.91 -0.02 6.68 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.05 2.43 7.50 -2.39 -0.02 2.41 16 46 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 48 H 0.17 2.20 6.29 -2.91 -0.02 2.19 16 Total: -1.00 -72.53 415.29 3.80 -68.73 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.27 Total: 33.40 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 6.93 Total: -8.37 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -3.24 Total: -108.17 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.02 Total: -28.05 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.16 Total: -1.98 kcal Total: -72.53 3.80 -68.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.880 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds