Wall clock time and date at job start Tue Mar 31 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36013 * 116.99859 * 2 1 4 4 C 1.38708 * 119.97321 * 180.02562 * 3 2 1 5 5 C 1.38095 * 120.02403 * 179.97438 * 4 3 2 6 6 C 1.38913 * 119.97275 * 359.97438 * 5 4 3 7 7 S 1.76201 * 120.02346 * 179.97438 * 6 5 4 8 8 C 1.81392 * 103.00342 * 85.76490 * 7 6 5 9 9 H 1.09000 * 109.47342 * 307.50958 * 8 7 6 10 10 C 1.53006 * 109.47275 * 67.50636 * 8 7 6 11 11 C 1.50699 * 109.47364 * 187.50494 * 8 7 6 12 12 O 1.21288 * 120.00282 * 339.99715 * 11 8 7 13 13 N 1.34781 * 119.99945 * 160.00025 * 11 8 7 14 14 C 1.39479 * 119.99773 * 179.97438 * 13 11 8 15 15 C 1.36104 * 126.21430 * 0.02562 * 14 13 11 16 16 C 1.39760 * 107.82277 * 179.97438 * 15 14 13 17 17 C 1.50700 * 125.83382 * 179.97438 * 16 15 14 18 18 N 1.30847 * 108.32710 * 0.02562 * 16 15 14 19 19 N 1.35259 * 126.21345 * 179.97438 * 14 13 11 20 20 C 1.46502 * 126.04604 * 0.02562 * 19 14 13 21 21 C 1.50697 * 109.47040 * 269.99527 * 20 19 14 22 22 H 1.07999 * 120.00415 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00056 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00024 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47235 * 90.00254 * 25 23 21 27 27 H 1.48504 * 109.46868 * 210.00263 * 25 23 21 28 28 H 1.48501 * 109.47070 * 329.99816 * 25 23 21 29 29 C 1.38922 * 119.95594 * 0.25846 * 6 5 4 30 30 C 1.38095 * 119.96784 * 359.48949 * 29 6 5 31 31 H 1.08999 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47191 * 300.00047 * 1 2 3 33 33 H 1.09004 * 109.47312 * 59.99752 * 1 2 3 34 34 H 1.08001 * 119.99084 * 359.95416 * 4 3 2 35 35 H 1.07997 * 120.01119 * 179.97438 * 5 4 3 36 36 H 1.09007 * 109.46972 * 294.79081 * 10 8 7 37 37 H 1.08996 * 109.46903 * 54.78930 * 10 8 7 38 38 H 1.09000 * 109.47380 * 174.79087 * 10 8 7 39 39 H 0.96994 * 119.99958 * 359.97438 * 13 11 8 40 40 H 1.08000 * 126.09352 * 359.97438 * 15 14 13 41 41 H 1.09004 * 109.47188 * 270.02682 * 17 16 15 42 42 H 1.08997 * 109.47438 * 30.03088 * 17 16 15 43 43 H 1.09008 * 109.47018 * 150.03252 * 17 16 15 44 44 H 1.08995 * 109.47381 * 29.99958 * 20 19 14 45 45 H 1.08998 * 109.46671 * 150.00294 * 20 19 14 46 46 H 0.97007 * 120.00509 * 180.02562 * 24 23 21 47 47 H 1.07994 * 120.01498 * 179.74798 * 29 6 5 48 48 H 1.07998 * 119.98581 * 180.23170 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0597 2.5138 -0.0011 6 6 3.3035 3.6791 -0.0016 7 16 4.1034 5.2491 -0.0016 8 6 4.4057 5.5531 -1.7641 9 1 4.9232 4.6970 -2.1971 10 6 3.0706 5.7587 -2.4826 11 6 5.2564 6.7869 -1.9224 12 8 5.3249 7.5961 -1.0215 13 7 5.9412 6.9913 -3.0652 14 6 6.7281 8.1335 -3.2119 15 6 6.8956 9.1187 -2.2879 16 6 7.7592 10.0733 -2.8321 17 6 8.2192 11.3368 -2.1516 18 7 8.0992 9.6829 -4.0338 19 7 7.4641 8.4628 -4.2979 20 6 7.5764 7.6818 -5.5323 21 6 8.7275 6.7166 -5.4131 22 1 9.3164 6.6875 -4.5082 23 6 9.0291 5.8707 -6.4592 24 7 8.3124 5.9065 -7.5613 25 14 10.4557 4.6738 -6.3111 26 1 9.9691 3.3918 -5.7411 27 1 11.0376 4.4286 -7.6552 28 1 11.4944 5.2495 -5.4196 29 6 1.9163 3.6059 0.0038 30 6 1.2904 2.3749 -0.0009 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 4.0193 0.3777 -0.0002 35 1 5.1382 2.5696 -0.0011 36 1 2.4931 4.8348 -2.4475 37 1 2.5122 6.5551 -1.9907 38 1 3.2553 6.0325 -3.5214 39 1 5.8867 6.3441 -3.7856 40 1 6.4420 9.1561 -1.3084 41 1 7.5251 12.1457 -2.3796 42 1 8.2509 11.1781 -1.0737 43 1 9.2145 11.6005 -2.5095 44 1 6.6526 7.1271 -5.6966 45 1 7.7512 8.3537 -6.3726 46 1 8.5243 5.3111 -8.2973 47 1 1.3275 4.5112 0.0075 48 1 0.2120 2.3176 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:23 Heat of formation + Delta-G solvation = 32.710991 kcal Electronic energy + Delta-G solvation = -30637.570621 eV Core-core repulsion = 26400.153740 eV Total energy + Delta-G solvation = -4237.416881 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.89972 -40.46990 -39.26338 -37.74618 -34.78803 -33.80858 -33.30613 -32.04248 -31.56953 -30.50381 -29.15538 -28.21189 -27.75420 -26.05107 -24.93902 -23.17703 -22.89398 -22.61248 -21.45387 -19.80030 -19.33896 -18.69987 -17.65431 -16.92792 -16.77526 -16.57682 -16.51505 -16.20559 -15.47716 -15.23319 -14.92311 -14.77012 -14.53533 -14.20590 -14.08676 -13.99125 -13.83968 -13.45428 -13.20030 -12.92764 -12.80357 -12.66178 -12.50711 -12.44097 -12.20097 -12.01390 -11.85970 -11.76655 -11.58465 -11.57626 -11.30395 -11.09606 -10.90537 -10.41525 -10.35153 -10.23580 -9.93978 -9.82549 -9.52384 -9.42089 -8.74203 -8.59948 -7.93765 -7.83489 -7.45931 -6.35422 -4.43877 0.58096 0.94933 1.47698 2.17984 2.39704 2.79336 2.83084 3.06907 3.14524 3.22340 3.28623 3.33713 3.58499 3.75969 4.22802 4.34000 4.44973 4.49271 4.63214 4.66136 4.67492 4.85514 4.93228 4.98040 4.99495 5.03112 5.18029 5.34316 5.36353 5.46817 5.59247 5.63382 5.63966 5.84437 5.86703 6.01038 6.03612 6.15852 6.16936 6.24424 6.25165 6.40092 6.64982 6.81569 6.88629 7.02410 7.48369 7.55374 7.59979 7.77591 7.86536 8.23119 8.60355 8.69435 9.23912 10.71668 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008472 B = 0.002361 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.230057 B =11857.594134 C =14269.290378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.151 3.849 4 C -0.161 4.161 5 C -0.030 4.030 6 C -0.171 4.171 7 S -0.066 6.066 8 C -0.106 4.106 9 H 0.113 0.887 10 C -0.142 4.142 11 C 0.542 3.458 12 O -0.496 6.496 13 N -0.634 5.634 14 C 0.301 3.699 15 C -0.293 4.293 16 C 0.051 3.949 17 C -0.062 4.062 18 N -0.284 5.284 19 N -0.344 5.344 20 C 0.256 3.744 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.271 1.271 29 C -0.025 4.025 30 C -0.219 4.219 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.057 0.943 46 H 0.269 0.731 47 H 0.136 0.864 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 -8.688 14.112 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.105 3.895 4 C -0.181 4.181 5 C -0.050 4.050 6 C -0.283 4.283 7 S 0.167 5.833 8 C -0.237 4.237 9 H 0.131 0.869 10 C -0.201 4.201 11 C 0.326 3.674 12 O -0.369 6.369 13 N -0.281 5.281 14 C 0.079 3.921 15 C -0.325 4.325 16 C -0.114 4.114 17 C -0.121 4.121 18 N -0.109 5.109 19 N -0.129 5.129 20 C 0.139 3.861 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.196 1.196 29 C -0.046 4.046 30 C -0.240 4.240 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.179 0.821 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.154 0.846 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.196 -7.521 14.275 22.862 hybrid contribution -0.315 -2.289 -1.041 2.534 sum -16.512 -9.810 13.234 23.324 Atomic orbital electron populations 1.23114 0.78025 1.04226 1.01605 1.86125 1.21738 1.26887 1.88113 1.19208 0.92463 0.84224 0.93569 1.20513 0.91411 0.98815 1.07351 1.21525 1.00378 0.90464 0.92682 1.21812 0.96100 0.97892 1.12484 1.86123 1.75938 1.16730 1.04488 1.23491 1.00283 0.99944 0.99967 0.86867 1.22027 0.93708 1.03608 1.00724 1.19521 0.79487 0.86789 0.81631 1.90673 1.61882 1.44847 1.39460 1.42625 1.44908 1.21990 1.18575 1.17881 0.94225 0.89117 0.90905 1.21272 1.11684 0.96712 1.02824 1.22033 0.98298 0.97863 0.93203 1.20022 1.01020 0.91958 0.99096 1.77362 1.19644 0.96939 1.16988 1.49352 1.33656 1.16533 1.13379 1.19621 0.98159 0.89867 0.78483 1.21343 1.14962 1.19201 1.02341 0.91670 1.24934 0.96909 0.97215 0.94618 1.69914 1.39503 1.38384 1.04985 0.86362 0.82030 0.80657 0.77735 1.20309 1.20771 1.19564 1.21418 0.93310 0.97405 0.92466 1.21293 1.00284 0.92137 1.10256 0.88025 0.92404 0.92371 0.84595 0.84193 0.91089 0.90422 0.90981 0.74659 0.82089 0.91368 0.91092 0.91497 0.93891 0.92505 0.92160 0.84623 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.69 10.50 -19.78 -0.21 -2.89 16 3 C 0.15 1.37 6.69 -39.23 -0.26 1.11 16 4 C -0.16 -1.49 9.98 -39.46 -0.39 -1.88 16 5 C -0.03 -0.29 9.79 -39.38 -0.39 -0.68 16 6 C -0.17 -1.77 5.31 -39.08 -0.21 -1.98 16 7 S -0.07 -0.81 20.33 -107.50 -2.19 -3.00 16 8 C -0.11 -1.28 3.13 -27.88 -0.09 -1.37 16 9 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 10 C -0.14 -1.41 9.05 37.16 0.34 -1.08 16 11 C 0.54 8.61 6.97 -10.98 -0.08 8.53 16 12 O -0.50 -9.15 13.17 5.55 0.07 -9.07 16 13 N -0.63 -11.04 5.42 -11.46 -0.06 -11.10 16 14 C 0.30 6.35 7.66 -153.16 -1.17 5.18 16 15 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 16 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 17 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 18 N -0.28 -6.63 12.56 33.65 0.42 -6.21 16 19 N -0.34 -8.05 3.60 -61.57 -0.22 -8.27 16 20 C 0.26 6.37 6.01 -5.19 -0.03 6.34 16 21 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 22 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 25 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 C -0.03 -0.22 9.37 -39.38 -0.37 -0.59 16 30 C -0.22 -1.76 9.03 -39.46 -0.36 -2.11 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 33 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.61 7.47 -51.93 -0.39 0.23 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.42 6.68 7.96 -40.82 -0.33 6.36 16 40 H 0.16 3.24 5.83 -52.49 -0.31 2.93 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 44 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 45 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 48 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16 LS Contribution 420.39 15.07 6.34 6.34 Total: -1.00 -32.57 420.39 -9.89 -42.47 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.73 Total: 6.63 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.04 Total: -7.05 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.88 Total: -49.02 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.13 Total: -11.97 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.19 Total: -3.00 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.57 -9.89 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.180 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds