Wall clock time and date at job start Tue Mar 31 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39761 * 125.83782 * 2 1 4 4 C 1.36107 * 107.82880 * 180.13898 * 3 2 1 5 5 N 1.39471 * 126.21852 * 179.90591 * 4 3 2 6 6 C 1.34777 * 120.00021 * 359.68820 * 5 4 3 7 7 O 1.21289 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.21352 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.46360 * 119.99846 * 179.97438 * 10 9 8 13 13 C 1.44623 * 123.53151 * 0.02562 * 12 10 9 14 14 C 1.32635 * 113.10444 * 180.02562 * 13 12 10 15 15 C 1.50709 * 124.64828 * 179.97438 * 14 13 12 16 16 S 1.75474 * 110.69678 * 0.02562 * 14 13 12 17 17 C 1.36487 * 123.52828 * 179.73318 * 12 10 9 18 18 C 1.50697 * 124.61955 * 359.97438 * 17 12 10 19 19 N 1.35265 * 107.56819 * 359.64244 * 4 3 2 20 20 C 1.46497 * 126.04873 * 180.23003 * 19 4 3 21 21 C 1.50690 * 109.47380 * 89.99702 * 20 19 4 22 22 H 1.07998 * 120.00460 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99746 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00141 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46983 * 60.00714 * 25 23 21 27 27 H 1.48501 * 109.46801 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47442 * 300.00379 * 25 23 21 29 29 N 1.30844 * 125.84104 * 179.73613 * 2 1 3 30 30 H 1.08999 * 109.47175 * 270.23738 * 1 2 3 31 31 H 1.08996 * 109.46933 * 30.23518 * 1 2 3 32 32 H 1.09000 * 109.46693 * 150.23729 * 1 2 3 33 33 H 1.07998 * 126.08508 * 0.03002 * 3 2 1 34 34 H 0.97003 * 120.00338 * 179.68907 * 5 4 3 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.07994 * 123.44942 * 0.02562 * 13 12 10 40 40 H 1.08998 * 109.46787 * 89.99939 * 15 14 13 41 41 H 1.08997 * 109.46758 * 210.00157 * 15 14 13 42 42 H 1.09000 * 109.46974 * 329.99834 * 15 14 13 43 43 H 1.08999 * 109.46968 * 90.00436 * 18 17 12 44 44 H 1.09006 * 109.47239 * 210.00004 * 18 17 12 45 45 H 1.08996 * 109.47303 * 330.00363 * 18 17 12 46 46 H 1.09004 * 109.46465 * 209.99920 * 20 19 4 47 47 H 1.09002 * 109.46814 * 329.99301 * 20 19 4 48 48 H 0.97005 * 119.99899 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7122 -0.0031 5 7 4.7513 1.5275 -0.0061 6 6 4.6157 2.8684 -0.0123 7 8 3.5097 3.3662 -0.0148 8 6 5.8383 3.7494 -0.0160 9 6 5.4089 5.2179 -0.0222 10 6 6.6316 6.0989 -0.0253 11 8 7.7382 5.6009 -0.0233 12 6 6.4843 7.5550 -0.0319 13 6 5.2045 8.2285 -0.0353 14 6 5.3120 9.5505 -0.0418 15 6 4.1458 10.5050 -0.0471 16 16 6.9984 10.0355 -0.0449 17 6 7.5404 8.4196 -0.0298 18 6 8.9884 8.0023 -0.0198 19 7 3.6093 -0.6404 0.0030 20 6 4.7871 -1.5115 0.0071 21 6 5.1909 -1.8038 1.4292 22 1 4.6269 -1.3824 2.2482 23 6 6.2804 -2.6092 1.6848 24 7 6.9675 -3.1219 0.6876 25 14 6.7814 -2.9708 3.4477 26 1 5.6623 -3.6473 4.1514 27 1 7.9752 -3.8540 3.4518 28 1 7.1052 -1.6984 4.1414 29 7 2.2732 -1.0607 0.0049 30 1 -0.3633 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5102 33 1 1.9902 2.1597 0.0005 34 1 5.6359 1.1295 -0.0036 35 1 6.4338 3.5408 -0.9049 36 1 6.4333 3.5490 0.8750 37 1 4.8137 5.4262 0.8669 38 1 4.8137 5.4186 -0.9131 39 1 4.2580 7.7084 -0.0328 40 1 3.8642 10.7402 0.9793 41 1 4.4286 11.4213 -0.5654 42 1 3.3012 10.0439 -0.5591 43 1 9.3433 7.8973 -1.0451 44 1 9.5812 8.7591 0.4941 45 1 9.0882 7.0488 0.4986 46 1 4.5499 -2.4454 -0.5025 47 1 5.6085 -1.0144 -0.5090 48 1 7.7343 -3.6882 0.8675 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:16 Heat of formation + Delta-G solvation = 17.291610 kcal Electronic energy + Delta-G solvation = -30437.381363 eV Core-core repulsion = 26199.295847 eV Total energy + Delta-G solvation = -4238.085516 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.88335 -40.17718 -39.09240 -37.43564 -34.73294 -33.75402 -33.53621 -33.04495 -32.05230 -29.99531 -29.16750 -28.40491 -26.87759 -26.02397 -25.15043 -23.47080 -22.77918 -21.21827 -20.59443 -19.68819 -19.23268 -18.74493 -17.43105 -17.00993 -16.73379 -16.36463 -16.16863 -15.97187 -15.13215 -14.95927 -14.72900 -14.49456 -14.25507 -14.19230 -14.01717 -13.76101 -13.65250 -13.35064 -13.25253 -12.91589 -12.82466 -12.73522 -12.49955 -12.43608 -12.12480 -12.02488 -11.95709 -11.92171 -11.77184 -11.55704 -11.34672 -11.29120 -11.08306 -10.86573 -10.37752 -10.32100 -9.90702 -9.82328 -9.78154 -9.48351 -8.98947 -8.80887 -8.70941 -7.90738 -7.42785 -6.32426 -4.40978 0.32643 1.07758 1.39582 1.51651 2.26780 2.73938 2.82116 3.12446 3.19298 3.23769 3.28298 3.61694 3.72938 4.00344 4.25184 4.26278 4.45664 4.57890 4.80991 4.85239 4.92456 4.93102 5.00944 5.10381 5.15444 5.21077 5.27657 5.37472 5.42613 5.49064 5.62165 5.65486 5.66317 5.71176 5.79018 5.89326 5.99315 6.03802 6.16694 6.20128 6.28555 6.44438 6.67589 6.84831 7.05051 7.32287 7.52826 7.59701 7.64330 7.80689 7.91848 8.31572 8.62978 8.71923 9.26555 10.74683 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.001979 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.705856 B =14148.576461 C =16406.391769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.296 4.296 4 C 0.301 3.699 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.520 6.520 8 C -0.128 4.128 9 C -0.144 4.144 10 C 0.417 3.583 11 O -0.454 6.454 12 C -0.201 4.201 13 C -0.099 4.099 14 C -0.206 4.206 15 C -0.082 4.082 16 S 0.173 5.827 17 C -0.140 4.140 18 C -0.098 4.098 19 N -0.345 5.345 20 C 0.257 3.743 21 C -0.541 4.541 22 H 0.064 0.936 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 N -0.286 5.286 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.418 0.582 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.154 0.846 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 27.854 -3.164 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C -0.328 4.328 4 C 0.079 3.921 5 N -0.286 5.286 6 C 0.307 3.693 7 O -0.394 6.394 8 C -0.168 4.168 9 C -0.182 4.182 10 C 0.295 3.705 11 O -0.331 6.331 12 C -0.215 4.215 13 C -0.126 4.126 14 C -0.322 4.322 15 C -0.141 4.141 16 S 0.440 5.560 17 C -0.260 4.260 18 C -0.156 4.156 19 N -0.130 5.130 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.082 0.918 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.200 1.200 29 N -0.111 5.111 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.172 0.828 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.236 27.901 -3.229 28.088 hybrid contribution 0.241 -1.147 0.982 1.529 sum 0.478 26.754 -2.247 26.853 Atomic orbital electron populations 1.20012 0.87627 1.02286 1.02113 1.22033 0.96496 0.91096 1.01928 1.21256 0.89052 1.00396 1.22083 1.17970 0.88110 0.83368 1.02692 1.42834 1.08328 1.05719 1.71765 1.20585 0.91431 0.81377 0.75862 1.90623 1.26959 1.73788 1.48070 1.21416 0.95835 0.93222 1.06321 1.21724 0.97351 0.92848 1.06302 1.21752 0.90274 0.87490 0.71021 1.90514 1.28607 1.76861 1.37079 1.20662 0.92317 0.95820 1.12745 1.21223 0.97801 0.92708 1.00908 1.24272 0.98289 0.98121 1.11565 1.20354 0.93833 0.96932 1.02980 1.83046 0.98211 1.04209 1.70556 1.24833 1.00805 0.98065 1.02274 1.20670 0.87590 1.03664 1.03707 1.49357 1.06517 1.02234 1.54887 1.19617 0.77828 0.89770 0.98896 1.21291 1.13353 1.31981 0.91304 0.91790 1.24936 0.95683 0.94867 0.98196 1.69903 1.19123 1.32493 1.31200 0.86408 0.78078 0.78509 0.83681 1.19880 1.20893 1.19960 1.77348 0.86169 1.21842 1.25764 0.91351 0.91183 0.91584 0.82142 0.74569 0.87776 0.87646 0.87333 0.87332 0.82825 0.90617 0.91319 0.90212 0.89985 0.91354 0.87919 0.92574 0.93792 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.40 16 3 C -0.30 -6.05 9.58 -39.78 -0.38 -6.44 16 4 C 0.30 6.37 7.66 -153.16 -1.17 5.20 16 5 N -0.64 -11.14 5.42 -11.46 -0.06 -11.20 16 6 C 0.52 7.85 7.79 -10.99 -0.09 7.76 16 7 O -0.52 -8.84 13.11 5.55 0.07 -8.77 16 8 C -0.13 -1.44 4.99 -27.89 -0.14 -1.58 16 9 C -0.14 -1.41 4.11 -27.88 -0.11 -1.53 16 10 C 0.42 4.40 7.11 -31.04 -0.22 4.18 16 11 O -0.45 -5.72 13.71 5.49 0.08 -5.64 16 12 C -0.20 -1.95 5.97 -104.75 -0.63 -2.57 16 13 C -0.10 -0.80 9.72 -38.96 -0.38 -1.18 16 14 C -0.21 -1.49 6.43 -36.20 -0.23 -1.73 16 15 C -0.08 -0.39 10.34 36.01 0.37 -0.02 16 16 S 0.17 1.23 22.94 -107.50 -2.47 -1.23 16 17 C -0.14 -1.27 6.36 -34.94 -0.22 -1.49 16 18 C -0.10 -0.81 9.60 36.00 0.35 -0.46 16 19 N -0.34 -8.15 3.60 -61.58 -0.22 -8.37 16 20 C 0.26 6.47 6.01 -5.20 -0.03 6.44 16 21 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 22 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 25 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 N -0.29 -6.72 12.56 33.65 0.42 -6.30 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 34 H 0.42 6.80 7.97 -40.82 -0.33 6.48 16 35 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.15 1.03 7.76 -52.49 -0.41 0.62 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 1.01 5.96 -51.93 -0.31 0.70 16 46 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 420.47 15.07 6.34 6.34 Total: -1.00 -32.86 420.47 -10.42 -43.28 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.77 Total: 6.61 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.53 Total: -6.82 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.88 Total: -49.64 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.15 Total: -14.41 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.47 Total: -1.23 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.86 -10.42 -43.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.575 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds