Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39761 * 125.83782 * 2 1 4 4 C 1.36107 * 107.82880 * 180.13898 * 3 2 1 5 5 N 1.39471 * 126.21852 * 179.90591 * 4 3 2 6 6 C 1.34777 * 120.00021 * 359.68820 * 5 4 3 7 7 O 1.21289 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.21352 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.46360 * 119.99846 * 179.97438 * 10 9 8 13 13 C 1.44623 * 123.53151 * 0.02562 * 12 10 9 14 14 C 1.32635 * 113.10444 * 180.02562 * 13 12 10 15 15 C 1.50709 * 124.64828 * 179.97438 * 14 13 12 16 16 S 1.75474 * 110.69678 * 0.02562 * 14 13 12 17 17 C 1.36487 * 123.52828 * 179.73318 * 12 10 9 18 18 C 1.50697 * 124.61955 * 359.97438 * 17 12 10 19 19 N 1.35265 * 107.56819 * 359.64244 * 4 3 2 20 20 C 1.46497 * 126.04873 * 180.23003 * 19 4 3 21 21 C 1.50690 * 109.47380 * 89.99702 * 20 19 4 22 22 H 1.07998 * 120.00460 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99746 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00141 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46983 * 60.00714 * 25 23 21 27 27 H 1.48501 * 109.46801 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47442 * 300.00379 * 25 23 21 29 29 N 1.30844 * 125.84104 * 179.73613 * 2 1 3 30 30 H 1.08999 * 109.47175 * 270.23738 * 1 2 3 31 31 H 1.08996 * 109.46933 * 30.23518 * 1 2 3 32 32 H 1.09000 * 109.46693 * 150.23729 * 1 2 3 33 33 H 1.07998 * 126.08508 * 0.03002 * 3 2 1 34 34 H 0.97003 * 120.00338 * 179.68907 * 5 4 3 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.07994 * 123.44942 * 0.02562 * 13 12 10 40 40 H 1.08998 * 109.46787 * 89.99939 * 15 14 13 41 41 H 1.08997 * 109.46758 * 210.00157 * 15 14 13 42 42 H 1.09000 * 109.46974 * 329.99834 * 15 14 13 43 43 H 1.08999 * 109.46968 * 90.00436 * 18 17 12 44 44 H 1.09006 * 109.47239 * 210.00004 * 18 17 12 45 45 H 1.08996 * 109.47303 * 330.00363 * 18 17 12 46 46 H 1.09004 * 109.46465 * 209.99920 * 20 19 4 47 47 H 1.09002 * 109.46814 * 329.99301 * 20 19 4 48 48 H 0.97005 * 119.99899 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7122 -0.0031 5 7 4.7513 1.5275 -0.0061 6 6 4.6157 2.8684 -0.0123 7 8 3.5097 3.3662 -0.0148 8 6 5.8383 3.7494 -0.0160 9 6 5.4089 5.2179 -0.0222 10 6 6.6316 6.0989 -0.0253 11 8 7.7382 5.6009 -0.0233 12 6 6.4843 7.5550 -0.0319 13 6 5.2045 8.2285 -0.0353 14 6 5.3120 9.5505 -0.0418 15 6 4.1458 10.5050 -0.0471 16 16 6.9984 10.0355 -0.0449 17 6 7.5404 8.4196 -0.0298 18 6 8.9884 8.0023 -0.0198 19 7 3.6093 -0.6404 0.0030 20 6 4.7871 -1.5115 0.0071 21 6 5.1909 -1.8038 1.4292 22 1 4.6269 -1.3824 2.2482 23 6 6.2804 -2.6092 1.6848 24 7 6.9675 -3.1219 0.6876 25 14 6.7814 -2.9708 3.4477 26 1 5.6623 -3.6473 4.1514 27 1 7.9752 -3.8540 3.4518 28 1 7.1052 -1.6984 4.1414 29 7 2.2732 -1.0607 0.0049 30 1 -0.3633 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5102 33 1 1.9902 2.1597 0.0005 34 1 5.6359 1.1295 -0.0036 35 1 6.4338 3.5408 -0.9049 36 1 6.4333 3.5490 0.8750 37 1 4.8137 5.4262 0.8669 38 1 4.8137 5.4186 -0.9131 39 1 4.2580 7.7084 -0.0328 40 1 3.8642 10.7402 0.9793 41 1 4.4286 11.4213 -0.5654 42 1 3.3012 10.0439 -0.5591 43 1 9.3433 7.8973 -1.0451 44 1 9.5812 8.7591 0.4941 45 1 9.0882 7.0488 0.4986 46 1 4.5499 -2.4454 -0.5025 47 1 5.6085 -1.0144 -0.5090 48 1 7.7343 -3.6882 0.8675 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -0.139877 kcal Electronic energy + Delta-G solvation = -30438.137249 eV Core-core repulsion = 26199.295847 eV Total energy + Delta-G solvation = -4238.841402 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.42118 -41.10667 -40.34938 -38.10088 -36.26403 -35.59766 -34.26911 -33.85230 -33.79392 -30.91072 -30.53346 -29.82466 -27.85982 -27.71555 -25.84802 -24.80463 -24.16387 -22.43863 -21.35559 -21.17928 -20.62050 -19.52783 -18.89630 -18.36799 -18.11644 -17.60981 -17.20237 -16.91638 -16.57494 -16.29004 -15.97122 -15.65908 -15.63463 -14.98937 -14.94774 -14.74404 -14.51297 -14.38425 -14.20634 -14.04046 -13.97776 -13.86189 -13.81416 -13.52447 -13.38310 -13.15406 -13.07495 -12.89787 -12.78660 -12.71412 -12.58472 -12.47227 -12.29845 -12.20159 -11.92883 -11.84164 -11.69318 -11.44712 -10.90296 -10.77512 -10.58077 -9.63097 -9.56003 -9.41217 -9.05256 -8.37632 -6.55136 -0.34929 0.50392 0.74426 0.80283 0.92438 1.34193 1.36594 1.38310 1.47086 1.64978 2.02564 2.07603 2.18806 2.34301 2.92754 3.09466 3.53376 3.69141 3.84023 3.85433 3.95670 4.08691 4.23904 4.27691 4.38049 4.53357 4.60663 4.62923 4.65397 4.67940 4.72882 4.79525 4.82149 4.82622 4.88097 4.90807 4.94150 4.98169 5.01914 5.12896 5.18835 5.22525 5.22718 5.25705 5.44285 5.49486 5.75788 5.97857 6.16367 6.28343 6.53903 6.55849 6.95918 7.04611 7.16886 8.68576 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.001979 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.705856 B =14148.576461 C =16406.391769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.305 4.305 4 C 0.298 3.702 5 N -0.642 5.642 6 C 0.524 3.476 7 O -0.535 6.535 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.421 3.579 11 O -0.481 6.481 12 C -0.220 4.220 13 C -0.111 4.111 14 C -0.209 4.209 15 C -0.084 4.084 16 S 0.207 5.793 17 C -0.159 4.159 18 C -0.097 4.097 19 N -0.369 5.369 20 C 0.272 3.728 21 C -0.555 4.555 22 H 0.047 0.953 23 C 0.027 3.973 24 N -0.914 5.914 25 Si 0.968 3.032 26 H -0.277 1.277 27 H -0.272 1.272 28 H -0.266 1.266 29 N -0.333 5.333 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.421 0.579 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.026 0.974 47 H 0.047 0.953 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 30.211 -2.519 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.337 4.337 4 C 0.075 3.925 5 N -0.290 5.290 6 C 0.313 3.687 7 O -0.410 6.410 8 C -0.158 4.158 9 C -0.176 4.176 10 C 0.300 3.700 11 O -0.360 6.360 12 C -0.235 4.235 13 C -0.138 4.138 14 C -0.325 4.325 15 C -0.142 4.142 16 S 0.474 5.526 17 C -0.279 4.279 18 C -0.155 4.155 19 N -0.154 5.154 20 C 0.154 3.846 21 C -0.594 4.594 22 H 0.065 0.935 23 C -0.175 4.175 24 N -0.551 5.551 25 Si 0.792 3.208 26 H -0.202 1.202 27 H -0.197 1.197 28 H -0.190 1.190 29 N -0.158 5.158 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.189 0.811 34 H 0.258 0.742 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.183 0.817 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.316 30.294 -2.594 30.406 hybrid contribution 0.352 -1.741 0.740 1.924 sum 0.036 28.553 -1.854 28.613 Atomic orbital electron populations 1.20222 0.83870 1.04061 1.03689 1.22918 0.98762 0.90123 0.99005 1.21497 0.88848 1.00899 1.22478 1.18403 0.89722 0.82823 1.01536 1.43077 1.07551 1.06248 1.72114 1.21268 0.92382 0.80588 0.74447 1.90596 1.28052 1.73778 1.48598 1.21427 0.93985 0.93227 1.07153 1.21706 0.97277 0.91515 1.07090 1.21883 0.89881 0.88128 0.70083 1.90512 1.29465 1.77367 1.38681 1.20738 0.93360 0.95388 1.14030 1.21344 0.97642 0.93145 1.01638 1.24667 0.99130 0.98380 1.10341 1.20464 0.93110 0.96824 1.03828 1.82901 0.97958 1.02380 1.69386 1.25084 1.01070 0.99435 1.02326 1.20647 0.87774 1.03296 1.03817 1.49158 1.06282 1.02972 1.56992 1.19201 0.78680 0.88999 0.97765 1.21366 1.13718 1.32654 0.91623 0.93452 1.25695 0.95401 0.94331 1.02100 1.69980 1.19431 1.32700 1.33030 0.85451 0.77782 0.78677 0.78869 1.20230 1.19676 1.19036 1.77300 0.86434 1.23757 1.28321 0.89714 0.88443 0.90773 0.81070 0.74194 0.86606 0.87046 0.86684 0.86375 0.81711 0.89742 0.90251 0.89391 0.89762 0.89658 0.89770 0.95569 0.93500 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.92 16 2 C 0.06 2.29 7.21 43.07 0.31 2.60 16 3 C -0.31 -12.35 9.58 22.14 0.21 -12.14 16 4 C 0.30 12.74 7.66 131.32 1.01 13.74 16 5 N -0.64 -22.45 5.42 -308.57 -1.67 -24.12 16 6 C 0.52 15.43 7.79 87.66 0.68 16.11 16 7 O -0.53 -17.59 13.11 -3.06 -0.04 -17.63 16 8 C -0.12 -2.55 4.99 29.85 0.15 -2.40 16 9 C -0.14 -2.54 4.11 29.85 0.12 -2.42 16 10 C 0.42 8.65 7.11 27.80 0.20 8.85 16 11 O -0.48 -12.13 13.71 -3.25 -0.04 -12.17 16 12 C -0.22 -4.08 5.97 -19.94 -0.12 -4.20 16 13 C -0.11 -1.63 9.72 22.74 0.22 -1.41 16 14 C -0.21 -2.61 6.43 24.52 0.16 -2.45 16 15 C -0.08 -0.59 10.34 71.24 0.74 0.15 16 16 S 0.21 2.58 22.94 -56.49 -1.30 1.28 16 17 C -0.16 -2.75 6.36 25.28 0.16 -2.59 16 18 C -0.10 -1.56 9.60 71.23 0.68 -0.88 16 19 N -0.37 -17.94 3.60 -348.73 -1.26 -19.20 16 20 C 0.27 14.28 6.01 85.63 0.51 14.79 16 21 C -0.56 -30.81 9.39 25.60 0.24 -30.57 16 22 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 23 C 0.03 1.43 5.46 84.66 0.46 1.89 16 24 N -0.91 -50.82 13.29 21.45 0.28 -50.53 16 25 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 29 N -0.33 -15.97 12.56 -47.45 -0.60 -16.56 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.17 6.51 5.83 -2.91 -0.02 6.49 16 34 H 0.42 13.94 7.97 -92.71 -0.74 13.20 16 35 H 0.12 2.28 8.10 -2.39 -0.02 2.26 16 36 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 37 H 0.12 1.99 8.10 -2.39 -0.02 1.97 16 38 H 0.12 1.97 8.10 -2.39 -0.02 1.95 16 39 H 0.17 1.92 7.76 -2.91 -0.02 1.90 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.08 1.69 5.96 -2.39 -0.01 1.68 16 46 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 2.38 7.50 -2.39 -0.02 2.36 16 48 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -71.51 420.47 4.15 -67.35 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.27 Total: 28.63 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.48 Total: -1.85 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.24 Total: -110.42 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.08 Total: -29.80 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.30 Total: 1.28 kcal Total: -71.51 4.15 -67.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.214 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds