Wall clock time and date at job start Tue Mar 31 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31357 * 119.63959 * 2 1 4 4 C 1.33769 * 119.75875 * 179.72370 * 3 2 1 5 5 C 1.40713 * 120.86626 * 180.02562 * 4 3 2 6 6 C 1.35726 * 120.08205 * 179.97438 * 5 4 3 7 7 C 1.40626 * 120.84252 * 0.02562 * 6 5 4 8 8 C 1.47866 * 119.75518 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99781 * 311.49166 * 8 7 6 10 10 N 1.34769 * 119.99935 * 131.49340 * 8 7 6 11 11 C 1.46491 * 120.00408 * 5.04222 * 10 8 7 12 12 C 1.50698 * 109.47527 * 95.70930 * 11 10 8 13 13 H 1.08000 * 119.99615 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00709 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99763 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47236 * 60.00097 * 16 14 12 18 18 H 1.48505 * 109.47258 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46965 * 299.99776 * 16 14 12 20 20 C 1.46507 * 119.99687 * 185.04138 * 10 8 7 21 21 C 1.50704 * 109.46941 * 89.99927 * 20 10 8 22 22 C 1.38671 * 120.42156 * 269.71881 * 21 20 10 23 23 C 1.38619 * 118.42317 * 179.78222 * 22 21 20 24 24 C 1.38235 * 119.16119 * 0.51919 * 23 22 21 25 25 N 1.31854 * 120.75704 * 359.72170 * 24 23 22 26 26 C 1.31885 * 121.73167 * 0.02562 * 25 24 23 27 27 C 1.38413 * 120.49362 * 0.02562 * 7 6 5 28 28 C 1.40455 * 119.49129 * 359.95977 * 27 7 6 29 29 N 1.33790 * 120.93031 * 180.02562 * 28 27 7 30 30 C 1.31303 * 119.73446 * 180.02562 * 29 28 27 31 31 C 1.50702 * 119.65974 * 180.02562 * 30 29 28 32 32 H 1.08999 * 109.46956 * 89.99908 * 1 2 3 33 33 H 1.09002 * 109.46890 * 209.99779 * 1 2 3 34 34 H 1.08992 * 109.47286 * 329.99822 * 1 2 3 35 35 H 1.07998 * 119.96175 * 0.02562 * 5 4 3 36 36 H 1.08001 * 119.57909 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47733 * 215.71141 * 11 10 8 38 38 H 1.09005 * 109.47473 * 335.70759 * 11 10 8 39 39 H 0.97002 * 120.00377 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46961 * 209.99702 * 20 10 8 41 41 H 1.08996 * 109.46888 * 330.00004 * 20 10 8 42 42 H 1.08004 * 120.78396 * 0.02562 * 22 21 20 43 43 H 1.08002 * 120.41944 * 180.21847 * 23 22 21 44 44 H 1.07992 * 119.61764 * 179.74537 * 24 23 22 45 45 H 1.08003 * 119.61660 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.25108 * 179.97438 * 27 7 6 47 47 H 1.08999 * 109.47126 * 269.97075 * 31 30 29 48 48 H 1.08991 * 109.47626 * 29.97338 * 31 30 29 49 49 H 1.09005 * 109.46944 * 149.97589 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1417 0.0000 4 6 3.4943 1.1445 0.0056 5 6 4.2137 2.3538 0.0063 6 6 5.5708 2.3381 0.0125 7 6 6.2777 1.1224 0.0178 8 6 7.7563 1.1333 0.0252 9 8 8.3628 1.8340 -0.7614 10 7 8.4315 0.3663 0.9039 11 6 7.7058 -0.5601 1.7763 12 6 7.6991 -1.9335 1.1559 13 1 8.1870 -2.0996 0.2068 14 6 7.0701 -2.9779 1.7997 15 7 6.4764 -2.7757 2.9557 16 14 7.0624 -4.6803 1.0309 17 1 8.4599 -5.1531 0.8611 18 1 6.3257 -5.6192 1.9147 19 1 6.3951 -4.6219 -0.2943 20 6 9.8913 0.4592 0.9867 21 6 10.2712 1.5104 1.9974 22 6 10.4501 2.8287 1.6060 23 6 10.7948 3.7624 2.5708 24 6 10.9584 3.3494 3.8799 25 7 10.7850 2.0861 4.2150 26 6 10.4520 1.1717 3.3248 27 6 5.5998 -0.0843 0.0163 28 6 4.1952 -0.0883 0.0102 29 7 3.5108 -1.2379 0.0090 30 6 2.1980 -1.2142 0.0028 31 6 1.4288 -2.5101 0.0021 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 3.6853 3.2957 0.0027 36 1 6.1148 3.2711 0.0126 37 1 8.1963 -0.6033 2.7488 38 1 6.6802 -0.2132 1.9019 39 1 6.0336 -3.5103 3.4086 40 1 10.2998 -0.5039 1.2930 41 1 10.2939 0.7309 0.0109 42 1 10.3199 3.1216 0.5747 43 1 10.9385 4.7986 2.3023 44 1 11.2309 4.0699 4.6367 45 1 10.3182 0.1465 3.6371 46 1 6.1466 -1.0156 0.0200 47 1 1.2477 -2.8246 -1.0257 48 1 2.0063 -3.2758 0.5199 49 1 0.4757 -2.3672 0.5115 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058311476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:09 Heat of formation + Delta-G solvation = 70.478687 kcal Electronic energy + Delta-G solvation = -34183.664423 eV Core-core repulsion = 29882.848504 eV Total energy + Delta-G solvation = -4300.815919 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.26790 -40.13945 -39.25425 -37.05661 -35.43507 -34.78050 -33.29065 -32.85403 -32.17876 -31.47876 -30.62836 -28.42263 -28.03078 -27.58581 -26.05474 -23.63455 -23.41884 -23.06010 -22.78313 -22.01818 -21.81480 -19.51894 -18.08141 -17.49302 -17.01082 -16.57182 -16.34948 -16.18703 -15.72214 -15.45766 -15.33764 -15.07293 -14.57329 -14.26269 -14.04077 -13.74587 -13.52929 -13.39767 -13.31183 -13.11761 -12.98867 -12.97236 -12.84615 -12.72950 -12.38588 -12.22497 -11.93532 -11.76053 -11.65306 -11.28797 -11.27874 -11.21157 -11.14195 -11.09926 -10.97186 -10.69622 -10.27838 -9.93614 -9.66008 -9.41561 -9.26499 -8.85572 -8.76634 -8.65299 -8.49711 -8.08341 -7.93697 -6.27107 -4.36713 0.43615 0.72353 1.26626 1.48844 2.20526 2.71399 3.22363 3.26953 3.29768 3.38325 3.67446 4.07139 4.12965 4.22881 4.25569 4.32060 4.45125 4.64337 4.79839 4.91835 4.97767 5.06553 5.07840 5.12253 5.21605 5.24810 5.29189 5.33549 5.35993 5.44401 5.57494 5.59282 5.67717 5.71019 5.82544 5.84662 5.92846 6.02210 6.10780 6.12424 6.23241 6.31292 6.34701 6.50231 6.51449 6.58731 6.75565 6.90459 6.98872 7.08753 7.33598 7.53779 7.64790 7.91305 8.01427 8.10219 8.16454 8.62317 8.77969 9.31667 10.78569 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.003462 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.473831 B = 8085.232543 C =10288.270393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 N -0.436 5.436 4 C 0.090 3.910 5 C -0.109 4.109 6 C -0.052 4.052 7 C -0.119 4.119 8 C 0.563 3.437 9 O -0.562 6.562 10 N -0.581 5.581 11 C 0.230 3.770 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.078 3.922 15 N -0.876 5.876 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.160 3.840 21 C -0.147 4.147 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.090 3.910 25 N -0.489 5.489 26 C 0.117 3.883 27 C -0.018 4.018 28 C 0.074 3.926 29 N -0.397 5.397 30 C 0.092 3.908 31 C -0.104 4.104 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.268 0.732 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.188 0.812 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 6.918 -3.141 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 N -0.150 5.150 4 C -0.034 4.034 5 C -0.128 4.128 6 C -0.073 4.073 7 C -0.124 4.124 8 C 0.351 3.649 9 O -0.443 6.443 10 N -0.310 5.310 11 C 0.110 3.890 12 C -0.590 4.590 13 H 0.083 0.917 14 C -0.128 4.128 15 N -0.512 5.512 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.037 3.963 21 C -0.150 4.150 22 C -0.084 4.084 23 C -0.201 4.201 24 C -0.067 4.067 25 N -0.197 5.197 26 C -0.041 4.041 27 C -0.037 4.037 28 C -0.050 4.050 29 N -0.111 5.111 30 C -0.065 4.065 31 C -0.162 4.162 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.167 0.833 45 H 0.176 0.824 46 H 0.205 0.795 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.601 7.020 -2.481 8.752 hybrid contribution -0.225 -0.665 -1.008 1.229 sum -4.826 6.355 -3.489 8.709 Atomic orbital electron populations 1.20797 0.87891 1.03970 1.03407 1.22360 0.98139 0.89131 0.95327 1.68479 1.07486 1.28579 1.10493 1.19626 0.89951 0.94440 0.99367 1.20447 0.93184 0.96306 1.02890 1.20811 0.93519 0.97425 0.95501 1.19885 0.94005 0.93662 1.04846 1.18169 0.86661 0.79527 0.80568 1.90676 1.69707 1.43651 1.40257 1.48181 1.05948 1.39214 1.37636 1.19703 0.92760 0.87030 0.89465 1.21330 1.37157 0.93304 1.07233 0.91718 1.24894 0.94305 0.99065 0.94513 1.69908 1.33778 1.32891 1.14635 0.86606 0.78332 0.83371 0.79630 1.20101 1.21065 1.19615 1.20171 0.81575 0.97099 0.97476 1.21418 1.00503 0.96187 0.96863 1.21657 0.93975 0.92370 1.00428 1.22103 1.02777 1.00599 0.94622 1.22709 0.96152 0.92926 0.94893 1.67710 1.12152 1.02101 1.37759 1.22830 0.93326 0.99262 0.88647 1.22538 0.91285 1.00981 0.88873 1.19508 0.95230 0.88814 1.01425 1.68580 1.07197 1.28489 1.06865 1.22341 0.90777 0.96414 0.96993 1.20794 0.99106 0.92892 1.03367 0.89945 0.89793 0.90240 0.84480 0.84777 0.94518 0.93803 0.92258 0.88572 0.89474 0.84494 0.85216 0.83272 0.82420 0.79525 0.90049 0.89842 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.77 36.01 0.35 -0.60 16 2 C 0.11 1.55 6.79 -82.25 -0.56 0.99 16 3 N -0.44 -7.27 10.37 -7.00 -0.07 -7.35 16 4 C 0.09 1.64 6.59 -84.72 -0.56 1.09 16 5 C -0.11 -1.76 9.95 -39.55 -0.39 -2.15 16 6 C -0.05 -0.87 9.60 -39.58 -0.38 -1.25 16 7 C -0.12 -2.33 4.96 -104.99 -0.52 -2.85 16 8 C 0.56 11.38 7.22 -12.32 -0.09 11.29 16 9 O -0.56 -11.79 16.47 5.32 0.09 -11.70 16 10 N -0.58 -11.56 2.44 -177.54 -0.43 -11.99 16 11 C 0.23 5.19 4.66 -5.20 -0.02 5.16 16 12 C -0.55 -13.35 6.84 -34.44 -0.24 -13.58 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.08 1.96 5.46 -17.82 -0.10 1.86 16 15 N -0.88 -23.18 13.29 55.43 0.74 -22.44 16 16 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.16 2.75 5.62 -5.19 -0.03 2.72 16 21 C -0.15 -2.36 5.48 -104.48 -0.57 -2.93 16 22 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 23 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 24 C 0.09 1.22 11.18 -17.54 -0.20 1.02 16 25 N -0.49 -7.91 10.36 -13.25 -0.14 -8.05 16 26 C 0.12 1.91 10.86 -17.55 -0.19 1.72 16 27 C -0.02 -0.37 7.47 -38.68 -0.29 -0.66 16 28 C 0.07 1.49 6.58 -84.81 -0.56 0.94 16 29 N -0.40 -7.85 10.37 -7.07 -0.07 -7.93 16 30 C 0.09 1.44 6.79 -82.27 -0.56 0.88 16 31 C -0.10 -1.17 9.77 36.01 0.35 -0.82 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.59 5.91 -51.93 -0.31 0.29 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 38 H 0.04 1.08 5.41 -51.93 -0.28 0.79 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.10 1.59 8.02 -51.93 -0.42 1.17 16 41 H 0.09 1.46 7.31 -51.93 -0.38 1.08 16 42 H 0.14 1.99 7.96 -52.48 -0.42 1.58 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 45 H 0.16 2.54 8.06 -52.48 -0.42 2.11 16 46 H 0.19 4.34 4.72 -52.49 -0.25 4.09 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.08 0.66 5.90 -51.93 -0.31 0.36 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -30.61 412.06 -10.17 -40.78 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.13 Total: 8.69 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -5.33 Total: -1.13 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.02 Total: -57.75 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.61 -10.17 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058311476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.257 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds