Wall clock time and date at job start Tue Mar 31 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31594 * 122.22852 * 2 1 4 4 C 1.29968 * 117.13633 * 180.26951 * 3 2 1 5 5 N 1.38771 * 125.36762 * 180.02562 * 4 3 2 6 6 C 1.34783 * 120.00076 * 179.97438 * 5 4 3 7 7 O 1.21601 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.47494 * 119.99733 * 180.02562 * 6 5 4 9 9 C 1.40372 * 120.47368 * 179.72443 * 8 6 5 10 10 C 1.36852 * 118.48851 * 179.79743 * 9 8 6 11 11 C 1.39396 * 119.38365 * 0.45164 * 10 9 8 12 12 N 1.38462 * 119.54025 * 179.76210 * 11 10 9 13 13 C 1.46506 * 119.99532 * 355.24159 * 12 11 10 14 14 C 1.53005 * 117.49222 * 229.34747 * 13 12 11 15 15 C 1.52998 * 117.49719 * 160.69042 * 13 12 11 16 16 N 1.32604 * 120.92695 * 359.78537 * 11 10 9 17 17 C 1.31679 * 121.63740 * 359.97438 * 16 11 10 18 18 S 1.76144 * 109.26569 * 359.97438 * 4 3 2 19 19 C 1.34654 * 122.23208 * 180.28502 * 2 1 3 20 20 S 1.76198 * 125.92950 * 359.69840 * 19 2 1 21 21 C 1.76202 * 99.99970 * 179.97438 * 20 19 2 22 22 H 1.07995 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38428 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31818 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00217 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47109 * 0.02562 * 25 23 21 27 27 H 1.48510 * 109.47285 * 119.99736 * 25 23 21 28 28 H 1.48501 * 109.47299 * 239.99575 * 25 23 21 29 29 H 1.08999 * 109.46895 * 269.70922 * 1 2 3 30 30 H 1.08997 * 109.46966 * 29.71247 * 1 2 3 31 31 H 1.08997 * 109.46701 * 149.71034 * 1 2 3 32 32 H 0.96998 * 120.00262 * 359.97335 * 5 4 3 33 33 H 1.08002 * 120.75593 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.30721 * 180.19970 * 10 9 8 35 35 H 0.96993 * 120.00273 * 175.23195 * 12 11 10 36 36 H 1.09000 * 115.55241 * 15.01211 * 13 12 11 37 37 H 1.08993 * 117.50128 * 359.97438 * 14 13 12 38 38 H 1.09000 * 117.49840 * 145.02514 * 14 13 12 39 39 H 1.09008 * 117.49884 * 214.97497 * 15 13 12 40 40 H 1.09005 * 117.50002 * 359.97438 * 15 13 12 41 41 H 1.08009 * 119.73972 * 179.97438 * 17 16 11 42 42 H 0.97001 * 119.99882 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5033 0.9978 -0.0054 5 7 4.4039 2.0537 -0.0059 6 6 5.7293 1.8090 -0.0113 7 8 6.1360 0.6631 -0.0153 8 6 6.6863 2.9313 -0.0112 9 6 8.0688 2.6880 -0.0110 10 6 8.9202 3.7594 -0.0151 11 6 8.3948 5.0505 -0.0098 12 7 9.2532 6.1369 -0.0090 13 6 10.6997 5.9273 0.0916 14 6 11.4620 6.7502 1.1322 15 6 11.6120 7.0706 -0.3572 16 7 7.0843 5.2530 -0.0051 17 6 6.2305 4.2505 -0.0057 18 16 3.9346 -0.7100 -0.0107 19 6 2.2252 -1.1390 -0.0057 20 16 1.5698 -2.7746 -0.0063 21 6 3.0667 -3.7040 -0.0157 22 1 4.0188 -3.1944 -0.0188 23 6 3.0223 -5.0876 -0.0193 24 7 1.8602 -5.7098 -0.0151 25 14 4.6092 -6.0730 -0.0286 26 1 5.7683 -5.1448 -0.0303 27 1 4.6655 -6.9321 1.1815 28 1 4.6553 -6.9257 -1.2436 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3632 -0.8874 -0.5183 32 1 4.0795 2.9678 -0.0023 33 1 8.4518 1.6781 -0.0113 34 1 9.9892 3.6060 -0.0183 35 1 8.8970 7.0366 -0.0751 36 1 11.0412 4.9088 -0.0931 37 1 10.8874 7.4478 1.7415 38 1 12.3052 6.2733 1.6317 39 1 12.5540 6.8042 -0.8368 40 1 11.1361 7.9786 -0.7276 41 1 5.1691 4.4507 -0.0013 42 1 1.8291 -6.6793 -0.0180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058317076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:14 Heat of formation + Delta-G solvation = 78.502877 kcal Electronic energy + Delta-G solvation = -27079.154913 eV Core-core repulsion = 23085.217583 eV Total energy + Delta-G solvation = -3993.937330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.077 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04560 -39.73327 -38.53038 -38.11612 -34.84374 -34.25737 -32.81483 -32.79391 -30.83782 -29.61123 -27.06456 -25.74744 -25.05773 -24.41675 -23.02816 -22.83339 -22.06533 -20.98683 -19.87153 -18.64722 -18.19207 -17.80814 -17.14377 -16.87054 -16.01549 -15.72800 -15.51960 -15.51030 -15.08468 -14.92392 -14.70362 -14.41837 -13.90338 -13.87092 -13.61560 -13.35293 -13.15464 -12.74241 -12.62552 -12.43904 -12.17939 -12.04531 -11.84831 -11.34626 -11.26304 -11.15415 -11.06301 -10.84565 -10.56207 -10.39893 -10.22466 -10.19076 -10.12567 -9.71137 -9.51772 -9.03623 -8.72169 -8.62023 -8.21239 -7.74327 -6.57842 -6.46803 -4.25035 0.46840 0.97524 1.50578 1.91700 2.39436 2.57926 2.66293 2.91056 3.10081 3.11044 3.19810 3.20113 3.39362 3.54751 3.76756 4.00089 4.01726 4.11201 4.28315 4.29790 4.42801 4.56763 4.60300 4.81555 4.84743 5.02048 5.06333 5.06531 5.20267 5.27114 5.28958 5.45323 5.60196 5.82521 5.98761 6.01363 6.17478 6.26519 6.44226 6.48841 6.52588 6.94143 6.99501 7.21418 7.35972 7.61329 8.00541 8.07249 8.54888 8.90959 10.47967 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.001899 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.312900 B =14742.246606 C =16612.972087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.020 3.980 3 N -0.475 5.475 4 C 0.189 3.811 5 N -0.612 5.612 6 C 0.563 3.437 7 O -0.507 6.507 8 C -0.241 4.241 9 C 0.030 3.970 10 C -0.243 4.243 11 C 0.427 3.573 12 N -0.687 5.687 13 C 0.081 3.919 14 C -0.194 4.194 15 C -0.185 4.185 16 N -0.546 5.546 17 C 0.193 3.807 18 S 0.203 5.797 19 C -0.252 4.252 20 S 0.148 5.852 21 C -0.555 4.555 22 H 0.090 0.910 23 C 0.081 3.919 24 N -0.863 5.863 25 Si 0.924 3.076 26 H -0.264 1.264 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.408 0.592 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.161 0.839 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 23.186 0.139 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.197 5.197 4 C -0.181 4.181 5 N -0.261 5.261 6 C 0.350 3.650 7 O -0.382 6.382 8 C -0.249 4.249 9 C 0.004 3.996 10 C -0.268 4.268 11 C 0.191 3.809 12 N -0.316 5.316 13 C -0.025 4.025 14 C -0.233 4.233 15 C -0.224 4.224 16 N -0.263 5.263 17 C 0.033 3.967 18 S 0.447 5.553 19 C -0.489 4.489 20 S 0.398 5.602 21 C -0.704 4.704 22 H 0.107 0.893 23 C -0.130 4.130 24 N -0.496 5.496 25 Si 0.749 3.251 26 H -0.188 1.188 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.245 0.755 36 H 0.153 0.847 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.179 0.821 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.369 22.358 0.150 27.132 hybrid contribution 1.306 0.048 -0.002 1.307 sum 16.675 22.406 0.148 27.931 Atomic orbital electron populations 1.20117 0.88059 1.02102 1.01790 1.19031 0.96688 0.84585 1.11951 1.65820 1.02775 1.32397 1.18684 1.23703 0.89837 0.92838 1.11762 1.42212 1.04318 1.08041 1.71522 1.18003 0.80965 0.89133 0.76944 1.90780 1.77048 1.21747 1.48638 1.20313 0.94552 0.93708 1.16350 1.21198 0.90974 1.00180 0.87231 1.21157 1.01424 0.91179 1.13012 1.18468 0.87695 0.86936 0.87828 1.43792 1.03251 1.06871 1.77666 1.21677 0.78545 0.97947 1.04377 1.23536 1.03283 1.04054 0.92456 1.23411 1.01503 0.99761 0.97709 1.67213 1.01330 1.35849 1.21921 1.22656 0.98838 0.86604 0.88622 1.85854 1.01634 0.95336 1.72465 1.28774 1.01373 1.06709 1.12029 1.83068 1.11042 0.84437 1.81639 1.23309 0.93634 0.94029 1.59391 0.89256 1.25032 0.98256 0.96692 0.92986 1.70028 1.24337 1.10211 1.45043 0.85991 0.81399 0.79448 0.78287 1.18760 1.20037 1.20033 0.91881 0.91926 0.91059 0.74998 0.83246 0.84238 0.75524 0.84681 0.88295 0.87721 0.87523 0.88268 0.82150 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.72 16 2 C 0.02 0.42 6.73 -83.96 -0.57 -0.14 16 3 N -0.48 -9.60 10.55 -9.81 -0.10 -9.70 16 4 C 0.19 3.68 8.39 -87.29 -0.73 2.95 16 5 N -0.61 -9.17 5.35 -12.75 -0.07 -9.24 16 6 C 0.56 8.43 7.73 -12.49 -0.10 8.33 16 7 O -0.51 -9.39 13.92 5.28 0.07 -9.32 16 8 C -0.24 -2.77 5.89 -104.82 -0.62 -3.39 16 9 C 0.03 0.31 9.65 -39.28 -0.38 -0.07 16 10 C -0.24 -2.05 9.28 -39.65 -0.37 -2.42 16 11 C 0.43 3.82 7.63 -155.27 -1.18 2.63 16 12 N -0.69 -4.41 5.73 -53.95 -0.31 -4.72 16 13 C 0.08 0.37 6.27 -67.93 -0.43 -0.06 16 14 C -0.19 -0.71 10.46 -26.69 -0.28 -0.99 16 15 C -0.19 -0.60 10.45 -26.69 -0.28 -0.88 16 16 N -0.55 -5.53 10.39 -12.13 -0.13 -5.66 16 17 C 0.19 1.90 10.71 -17.12 -0.18 1.72 16 18 S 0.20 4.53 18.34 -107.50 -1.97 2.55 16 19 C -0.25 -5.87 6.67 29.46 0.20 -5.67 16 20 S 0.15 3.74 20.74 -107.50 -2.23 1.51 16 21 C -0.55 -15.20 9.26 30.80 0.29 -14.92 16 22 H 0.09 2.44 5.97 -52.49 -0.31 2.12 16 23 C 0.08 2.18 5.49 -17.49 -0.10 2.08 16 24 N -0.86 -23.87 13.22 55.47 0.73 -23.14 16 25 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 26 H -0.26 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 32 H 0.41 4.68 6.87 -40.82 -0.28 4.40 16 33 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 34 H 0.14 0.81 5.85 -52.49 -0.31 0.50 16 35 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 36 H 0.14 0.49 5.89 -51.93 -0.31 0.19 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.25 8.14 -51.92 -0.42 -0.18 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.16 1.18 6.41 -52.48 -0.34 0.84 16 42 H 0.28 7.07 8.32 -40.82 -0.34 6.73 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -33.08 385.94 -11.94 -45.02 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.37 Total: 2.65 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.36 Total: -11.53 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.13 Total: -52.46 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 8.26 SS G_CDS: -4.20 Total: 4.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.08 -11.94 -45.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058317076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.518 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds