Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31594 * 122.22852 * 2 1 4 4 C 1.29968 * 117.13633 * 180.26951 * 3 2 1 5 5 N 1.38771 * 125.36762 * 180.02562 * 4 3 2 6 6 C 1.34783 * 120.00076 * 179.97438 * 5 4 3 7 7 O 1.21601 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.47494 * 119.99733 * 180.02562 * 6 5 4 9 9 C 1.40372 * 120.47368 * 179.72443 * 8 6 5 10 10 C 1.36852 * 118.48851 * 179.79743 * 9 8 6 11 11 C 1.39396 * 119.38365 * 0.45164 * 10 9 8 12 12 N 1.38462 * 119.54025 * 179.76210 * 11 10 9 13 13 C 1.46506 * 119.99532 * 355.24159 * 12 11 10 14 14 C 1.53005 * 117.49222 * 229.34747 * 13 12 11 15 15 C 1.52998 * 117.49719 * 160.69042 * 13 12 11 16 16 N 1.32604 * 120.92695 * 359.78537 * 11 10 9 17 17 C 1.31679 * 121.63740 * 359.97438 * 16 11 10 18 18 S 1.76144 * 109.26569 * 359.97438 * 4 3 2 19 19 C 1.34654 * 122.23208 * 180.28502 * 2 1 3 20 20 S 1.76198 * 125.92950 * 359.69840 * 19 2 1 21 21 C 1.76202 * 99.99970 * 179.97438 * 20 19 2 22 22 H 1.07995 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38428 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31818 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00217 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47109 * 0.02562 * 25 23 21 27 27 H 1.48510 * 109.47285 * 119.99736 * 25 23 21 28 28 H 1.48501 * 109.47299 * 239.99575 * 25 23 21 29 29 H 1.08999 * 109.46895 * 269.70922 * 1 2 3 30 30 H 1.08997 * 109.46966 * 29.71247 * 1 2 3 31 31 H 1.08997 * 109.46701 * 149.71034 * 1 2 3 32 32 H 0.96998 * 120.00262 * 359.97335 * 5 4 3 33 33 H 1.08002 * 120.75593 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.30721 * 180.19970 * 10 9 8 35 35 H 0.96993 * 120.00273 * 175.23195 * 12 11 10 36 36 H 1.09000 * 115.55241 * 15.01211 * 13 12 11 37 37 H 1.08993 * 117.50128 * 359.97438 * 14 13 12 38 38 H 1.09000 * 117.49840 * 145.02514 * 14 13 12 39 39 H 1.09008 * 117.49884 * 214.97497 * 15 13 12 40 40 H 1.09005 * 117.50002 * 359.97438 * 15 13 12 41 41 H 1.08009 * 119.73972 * 179.97438 * 17 16 11 42 42 H 0.97001 * 119.99882 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5033 0.9978 -0.0054 5 7 4.4039 2.0537 -0.0059 6 6 5.7293 1.8090 -0.0113 7 8 6.1360 0.6631 -0.0153 8 6 6.6863 2.9313 -0.0112 9 6 8.0688 2.6880 -0.0110 10 6 8.9202 3.7594 -0.0151 11 6 8.3948 5.0505 -0.0098 12 7 9.2532 6.1369 -0.0090 13 6 10.6997 5.9273 0.0916 14 6 11.4620 6.7502 1.1322 15 6 11.6120 7.0706 -0.3572 16 7 7.0843 5.2530 -0.0051 17 6 6.2305 4.2505 -0.0057 18 16 3.9346 -0.7100 -0.0107 19 6 2.2252 -1.1390 -0.0057 20 16 1.5698 -2.7746 -0.0063 21 6 3.0667 -3.7040 -0.0157 22 1 4.0188 -3.1944 -0.0188 23 6 3.0223 -5.0876 -0.0193 24 7 1.8602 -5.7098 -0.0151 25 14 4.6092 -6.0730 -0.0286 26 1 5.7683 -5.1448 -0.0303 27 1 4.6655 -6.9321 1.1815 28 1 4.6553 -6.9257 -1.2436 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3632 -0.8874 -0.5183 32 1 4.0795 2.9678 -0.0023 33 1 8.4518 1.6781 -0.0113 34 1 9.9892 3.6060 -0.0183 35 1 8.8970 7.0366 -0.0751 36 1 11.0412 4.9088 -0.0931 37 1 10.8874 7.4478 1.7415 38 1 12.3052 6.2733 1.6317 39 1 12.5540 6.8042 -0.8368 40 1 11.1361 7.9786 -0.7276 41 1 5.1691 4.4507 -0.0013 42 1 1.8291 -6.6793 -0.0180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058317076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = 57.946859 kcal Electronic energy + Delta-G solvation = -27080.046289 eV Core-core repulsion = 23085.217583 eV Total energy + Delta-G solvation = -3994.828706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.077 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97808 -40.86725 -40.02642 -38.65489 -36.22923 -34.88692 -34.79718 -33.56526 -32.21921 -30.54504 -28.75743 -27.69953 -26.07727 -25.26307 -23.95552 -23.25446 -22.84933 -22.12286 -21.30151 -20.02620 -19.24786 -19.11254 -18.27278 -17.96370 -17.28288 -17.05987 -16.82477 -16.62798 -16.41781 -15.90740 -15.67134 -15.47629 -15.21068 -14.95209 -14.80799 -14.39502 -14.22548 -14.07621 -13.55269 -13.39844 -13.33348 -13.22298 -13.06036 -12.90615 -12.86747 -12.41966 -12.36395 -12.12535 -12.01923 -11.51494 -11.38827 -11.33880 -11.12558 -10.84980 -10.79512 -10.58651 -10.46483 -10.44659 -9.51673 -8.81249 -8.56128 -8.33648 -6.27945 -0.47601 -0.05024 0.23163 0.24835 0.85199 1.28270 1.33230 1.41982 1.48090 1.51733 1.66952 1.86310 2.06002 2.16029 2.72817 2.82897 3.01188 3.11472 3.35473 3.50386 3.70834 3.74030 3.84305 3.86632 3.98212 4.01304 4.12803 4.45803 4.56265 4.64697 4.70591 4.79373 4.87311 4.87604 4.98162 5.03828 5.06708 5.12871 5.21654 5.30847 5.31818 5.49095 5.86062 5.95353 6.04306 6.35527 6.75475 6.87136 6.88807 6.93261 8.51774 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.001899 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.312900 B =14742.246606 C =16612.972087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.482 5.482 4 C 0.228 3.772 5 N -0.601 5.601 6 C 0.567 3.433 7 O -0.542 6.542 8 C -0.261 4.261 9 C 0.023 3.977 10 C -0.238 4.238 11 C 0.426 3.574 12 N -0.677 5.677 13 C 0.062 3.938 14 C -0.192 4.192 15 C -0.175 4.175 16 N -0.561 5.561 17 C 0.204 3.796 18 S 0.161 5.839 19 C -0.282 4.282 20 S 0.100 5.900 21 C -0.575 4.575 22 H 0.081 0.919 23 C 0.034 3.966 24 N -0.895 5.895 25 Si 0.986 3.014 26 H -0.268 1.268 27 H -0.264 1.264 28 H -0.264 1.264 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.432 0.568 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.412 0.588 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.184 0.816 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.796 26.278 0.127 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.204 5.204 4 C -0.144 4.144 5 N -0.253 5.253 6 C 0.357 3.643 7 O -0.420 6.420 8 C -0.269 4.269 9 C -0.002 4.002 10 C -0.263 4.263 11 C 0.189 3.811 12 N -0.304 5.304 13 C -0.043 4.043 14 C -0.231 4.231 15 C -0.213 4.213 16 N -0.279 5.279 17 C 0.043 3.957 18 S 0.406 5.594 19 C -0.518 4.518 20 S 0.348 5.652 21 C -0.723 4.723 22 H 0.099 0.901 23 C -0.173 4.173 24 N -0.530 5.530 25 Si 0.807 3.193 26 H -0.192 1.192 27 H -0.188 1.188 28 H -0.188 1.188 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.275 0.725 33 H 0.164 0.836 34 H 0.184 0.816 35 H 0.249 0.751 36 H 0.163 0.837 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.200 0.800 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.499 25.554 0.139 30.971 hybrid contribution 0.882 -0.407 0.009 0.971 sum 18.380 25.147 0.148 31.148 Atomic orbital electron populations 1.20246 0.85620 1.03159 1.03102 1.19707 0.98427 0.84136 1.08127 1.66032 1.02559 1.31382 1.20386 1.24019 0.90165 0.92884 1.07375 1.42330 1.03891 1.07951 1.71122 1.18632 0.80938 0.89565 0.75198 1.90770 1.77430 1.23641 1.50174 1.20050 0.94122 0.92983 1.19789 1.21282 0.90840 1.00737 0.87386 1.21356 1.02529 0.90332 1.12043 1.18758 0.87758 0.87834 0.86778 1.43969 1.03968 1.06514 1.75936 1.21956 0.77459 0.99085 1.05843 1.23572 1.03169 1.03598 0.92737 1.23484 1.01431 0.99055 0.97374 1.67311 1.01943 1.35722 1.22903 1.22934 0.99944 0.85730 0.87049 1.86043 1.02169 0.97954 1.73264 1.28597 1.01704 1.06046 1.15403 1.82871 1.11186 0.86170 1.85016 1.23487 0.93911 0.94837 1.60085 0.90133 1.25894 1.01415 0.97452 0.92553 1.70104 1.26053 1.10665 1.46183 0.85079 0.77225 0.77957 0.79007 1.19225 1.18842 1.18826 0.90308 0.89455 0.91357 0.72530 0.83586 0.81623 0.75080 0.83722 0.88724 0.86765 0.86294 0.88051 0.79971 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.11 10.02 71.24 0.71 -1.40 16 2 C 0.04 1.57 6.73 41.77 0.28 1.85 16 3 N -0.48 -18.75 10.55 -184.94 -1.95 -20.71 16 4 C 0.23 8.67 8.39 179.19 1.50 10.18 16 5 N -0.60 -17.07 5.35 -312.51 -1.67 -18.74 16 6 C 0.57 16.51 7.73 86.68 0.67 17.18 16 7 O -0.54 -20.25 13.92 -4.03 -0.06 -20.31 16 8 C -0.26 -5.63 5.89 -20.00 -0.12 -5.75 16 9 C 0.02 0.45 9.65 22.46 0.22 0.67 16 10 C -0.24 -3.46 9.28 22.22 0.21 -3.25 16 11 C 0.43 6.55 7.63 133.25 1.02 7.57 16 12 N -0.68 -6.89 5.73 -324.61 -1.86 -8.75 16 13 C 0.06 0.38 6.27 44.99 0.28 0.66 16 14 C -0.19 -0.88 10.46 30.62 0.32 -0.56 16 15 C -0.18 -0.61 10.45 30.62 0.32 -0.29 16 16 N -0.56 -10.00 10.39 -192.30 -2.00 -12.00 16 17 C 0.20 3.56 10.71 85.04 0.91 4.47 16 18 S 0.16 7.34 18.34 -56.49 -1.04 6.30 16 19 C -0.28 -13.45 6.67 67.00 0.45 -13.00 16 20 S 0.10 5.28 20.74 -56.49 -1.17 4.11 16 21 C -0.57 -32.84 9.26 67.87 0.63 -32.21 16 22 H 0.08 4.61 5.97 -2.91 -0.02 4.59 16 23 C 0.03 1.88 5.49 84.74 0.46 2.34 16 24 N -0.90 -51.04 13.22 21.59 0.29 -50.75 16 25 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 29 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.39 7.38 -2.39 -0.02 2.38 16 32 H 0.43 8.70 6.87 -92.71 -0.64 8.06 16 33 H 0.15 2.86 7.73 -2.91 -0.02 2.84 16 34 H 0.17 1.43 5.85 -2.91 -0.02 1.41 16 35 H 0.41 3.66 8.93 -92.71 -0.83 2.83 16 36 H 0.15 0.58 5.89 -2.39 -0.01 0.57 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 40 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.18 2.14 6.41 -2.91 -0.02 2.12 16 42 H 0.28 14.73 8.32 -92.71 -0.77 13.96 16 Total: -1.00 -73.73 385.94 0.10 -73.63 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.34 Total: 13.18 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 7.86 Total: -11.54 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -7.19 Total: -110.95 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.06 Total: -20.31 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 12.62 SS G_CDS: -2.21 Total: 10.42 kcal Total: -73.73 0.10 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058317076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.577 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds