Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48503 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46863 * 299.99864 * 3 2 1 6 6 H 1.48500 * 109.47274 * 60.00226 * 3 2 1 7 7 C 1.39062 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00367 * 202.59517 * 7 2 1 9 9 N 1.36822 * 119.99791 * 22.58224 * 7 2 1 10 10 C 1.46501 * 120.00242 * 220.92506 * 9 7 2 11 11 C 1.50704 * 109.47062 * 353.17058 * 10 9 7 12 12 C 1.38231 * 119.99691 * 263.41484 * 11 10 9 13 13 C 1.38237 * 119.99769 * 179.76451 * 12 11 10 14 14 C 1.38232 * 119.99979 * 0.50948 * 13 12 11 15 15 C 1.38241 * 119.99737 * 359.74660 * 14 13 12 16 16 C 1.38224 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.34780 * 119.99933 * 40.92334 * 9 7 2 18 18 O 1.21702 * 120.00018 * 1.72212 * 17 9 7 19 19 C 1.46873 * 119.99982 * 181.71607 * 17 9 7 20 20 C 1.39559 * 120.40561 * 116.59024 * 19 17 9 21 21 C 1.39064 * 119.11183 * 179.74504 * 20 19 17 22 22 C 1.38105 * 119.91983 * 0.25500 * 21 20 19 23 23 C 1.47790 * 119.58596 * 180.02562 * 22 21 20 24 24 C 1.40016 * 120.93652 * 359.72406 * 23 22 21 25 25 C 1.38026 * 118.98333 * 179.70786 * 24 23 22 26 26 N 1.31879 * 120.90748 * 0.57540 * 25 24 23 27 27 C 1.31875 * 122.08671 * 359.71777 * 26 25 24 28 28 C 1.38026 * 120.91313 * 359.97432 * 27 26 25 29 29 N 1.36474 * 120.82793 * 359.97438 * 22 21 20 30 30 H 0.96993 * 119.53667 * 180.02562 * 29 22 21 31 31 C 1.34631 * 120.91813 * 0.02562 * 29 22 21 32 32 O 1.21867 * 119.98499 * 179.97438 * 31 29 22 33 33 H 0.96998 * 119.99692 * 4.94618 * 1 2 3 34 34 H 1.09001 * 109.47423 * 113.17270 * 10 9 7 35 35 H 1.09000 * 109.47309 * 233.17142 * 10 9 7 36 36 H 1.08007 * 120.00394 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.99802 * 180.23279 * 13 12 11 38 38 H 1.07997 * 119.99890 * 179.72369 * 14 13 12 39 39 H 1.08005 * 119.99510 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.00345 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.44141 * 0.02562 * 20 19 17 42 42 H 1.07999 * 120.04202 * 180.27782 * 21 20 19 43 43 H 1.08005 * 120.51001 * 359.97071 * 24 23 22 44 44 H 1.08000 * 119.54749 * 180.27036 * 25 24 23 45 45 H 1.08002 * 119.54489 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.51313 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7076 1.3464 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0268 -1.2403 0.3588 9 7 1.4035 -2.3436 -0.4561 10 6 1.6013 -3.6112 0.2511 11 6 2.6346 -3.4272 1.3326 12 6 3.9525 -3.7700 1.0949 13 6 4.9012 -3.5966 2.0852 14 6 4.5301 -3.0903 3.3168 15 6 3.2112 -2.7524 3.5563 16 6 2.2636 -2.9204 2.5640 17 6 0.6251 -2.2996 -1.5555 18 8 0.4859 -1.2532 -2.1611 19 6 -0.0551 -3.5146 -2.0227 20 6 -1.4490 -3.5802 -2.0434 21 6 -2.0650 -4.7419 -2.4961 22 6 -1.2970 -5.8117 -2.9120 23 6 -1.9593 -7.0425 -3.3923 24 6 -3.3555 -7.1421 -3.4264 25 6 -3.9317 -8.3082 -3.8881 26 7 -3.1863 -9.3222 -4.2824 27 6 -1.8687 -9.2729 -4.2613 28 6 -1.2083 -8.1438 -3.8207 29 7 0.0660 -5.7462 -2.8862 30 1 0.5870 -6.5085 -3.1831 31 6 0.6972 -4.6381 -2.4544 32 8 1.9151 -4.5983 -2.4381 33 1 -0.4849 0.8369 -0.0724 34 1 0.6595 -3.9285 0.6987 35 1 1.9431 -4.3704 -0.4524 36 1 4.2418 -4.1693 0.1339 37 1 5.9315 -3.8609 1.8982 38 1 5.2705 -2.9590 4.0920 39 1 2.9212 -2.3572 4.5187 40 1 1.2331 -2.6569 2.7512 41 1 -2.0413 -2.7384 -1.7164 42 1 -3.1426 -4.8073 -2.5226 43 1 -3.9722 -6.3175 -3.1003 44 1 -5.0078 -8.3933 -3.9225 45 1 -1.2984 -10.1275 -4.5942 46 1 -0.1289 -8.1103 -3.8065 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058327105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = 53.160993 kcal Electronic energy + Delta-G solvation = -33386.790902 eV Core-core repulsion = 29014.816848 eV Total energy + Delta-G solvation = -4371.974054 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.37017 -40.20941 -38.89811 -37.71496 -36.93725 -34.38241 -33.65012 -33.05392 -32.00951 -31.60067 -30.34217 -30.28344 -29.20519 -26.12465 -25.50028 -24.35639 -23.99931 -22.85057 -22.21663 -21.95153 -20.66073 -20.15972 -18.63595 -17.53838 -17.35457 -16.59278 -16.26045 -16.16720 -15.81031 -15.62084 -15.39147 -15.36359 -14.81227 -14.52147 -14.49915 -14.28832 -14.23866 -13.93138 -13.71756 -13.31753 -12.91086 -12.74615 -12.50252 -12.45148 -12.27333 -12.13782 -11.86752 -11.76079 -11.38676 -11.12440 -10.80061 -10.59531 -10.45468 -10.41479 -10.16558 -10.11974 -10.06827 -10.00089 -9.79368 -9.64929 -8.74917 -8.32942 -8.28262 -7.97952 -7.64104 -7.07436 -6.08903 -3.75244 -0.04683 0.66942 1.31814 1.94780 2.01992 2.02263 2.74569 3.34950 3.36932 3.47290 3.49673 3.72340 3.83554 4.00942 4.17373 4.27332 4.35706 4.47654 4.48860 4.62663 4.83044 5.01255 5.05509 5.12831 5.26193 5.35029 5.36763 5.40781 5.42367 5.48959 5.53995 5.64282 5.70826 5.76060 6.05326 6.11322 6.13059 6.19436 6.26916 6.29859 6.37806 6.45516 6.59289 6.67207 6.71086 6.96302 7.02505 7.06067 7.36397 7.51457 7.60535 7.72097 8.17208 8.30713 9.07252 9.19711 9.69114 10.29543 10.98908 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002770 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.940953 B =10104.742198 C =11687.927678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.075 3.925 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.330 4.330 8 H 0.083 0.917 9 N -0.425 5.425 10 C 0.131 3.869 11 C -0.051 4.051 12 C -0.107 4.107 13 C -0.130 4.130 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.082 4.082 17 C 0.529 3.471 18 O -0.533 6.533 19 C -0.191 4.191 20 C -0.003 4.003 21 C -0.179 4.179 22 C 0.169 3.831 23 C -0.009 4.009 24 C -0.148 4.148 25 C 0.106 3.894 26 N -0.484 5.484 27 C 0.108 3.892 28 C -0.167 4.167 29 N -0.601 5.601 30 H 0.408 0.592 31 C 0.526 3.474 32 O -0.527 6.527 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -17.255 -1.887 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.457 4.457 8 H 0.101 0.899 9 N -0.145 5.145 10 C 0.008 3.992 11 C -0.051 4.051 12 C -0.126 4.126 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.100 4.100 17 C 0.315 3.685 18 O -0.412 6.412 19 C -0.199 4.199 20 C -0.025 4.025 21 C -0.203 4.203 22 C 0.060 3.940 23 C -0.018 4.018 24 C -0.168 4.168 25 C -0.050 4.050 26 N -0.193 5.193 27 C -0.048 4.048 28 C -0.187 4.187 29 N -0.235 5.235 30 H 0.247 0.753 31 C 0.326 3.674 32 O -0.407 6.407 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.180 0.820 45 H 0.178 0.822 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.854 -17.176 -2.342 18.296 hybrid contribution 0.858 1.321 0.139 1.582 sum -4.996 -15.854 -2.203 16.768 Atomic orbital electron populations 1.69867 1.06582 1.27692 1.42411 1.25066 0.94616 0.99196 0.94627 0.86335 0.80366 0.83254 0.77338 1.19526 1.20641 1.21357 1.19009 0.96463 0.85201 1.44987 0.89903 1.43114 1.43887 1.06150 1.21319 1.20728 0.95441 0.90129 0.92875 1.19659 0.94315 0.96831 0.94312 1.21029 0.92686 1.00196 0.98671 1.20967 0.98753 1.01235 0.93888 1.20967 0.96034 1.00892 0.97063 1.21019 0.93422 1.01143 0.99098 1.20986 0.99757 0.96605 0.92668 1.16774 0.83946 0.85835 0.81915 1.90662 1.63533 1.30470 1.56564 1.21870 0.94508 0.96351 1.07175 1.21798 0.93675 0.96597 0.90475 1.20911 1.00230 0.92598 1.06593 1.18963 0.83016 0.93921 0.98059 1.18989 0.93889 0.91898 0.97015 1.22337 0.93693 1.00310 1.00474 1.22793 1.00576 0.88213 0.93452 1.67628 1.07128 1.30144 1.14365 1.22701 0.90358 0.96955 0.94793 1.22233 1.01266 0.94214 1.00996 1.43667 1.05710 1.18218 1.55913 0.75297 1.17126 0.88348 0.82173 0.79802 1.90949 1.12402 1.81310 1.56050 0.92706 0.93789 0.90772 0.86469 0.86923 0.87066 0.86825 0.86242 0.83496 0.83304 0.83446 0.81999 0.82177 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.20 11.81 55.50 0.66 -23.55 16 2 C 0.07 2.13 4.23 -17.45 -0.07 2.06 16 3 Si 0.90 22.61 29.61 -169.99 -5.03 17.58 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.33 -9.26 7.75 -15.02 -0.12 -9.37 16 8 H 0.08 2.35 6.96 -52.49 -0.37 1.99 16 9 N -0.42 -11.03 2.92 -117.51 -0.34 -11.38 16 10 C 0.13 2.85 5.25 -5.19 -0.03 2.83 16 11 C -0.05 -1.03 3.53 -104.62 -0.37 -1.40 16 12 C -0.11 -2.02 9.56 -39.58 -0.38 -2.39 16 13 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 14 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 15 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 16 C -0.08 -1.57 9.17 -39.59 -0.36 -1.94 16 17 C 0.53 13.96 5.98 -12.77 -0.08 13.88 16 18 O -0.53 -16.21 14.80 5.19 0.08 -16.13 16 19 C -0.19 -3.93 4.87 -104.50 -0.51 -4.44 16 20 C 0.00 -0.05 9.88 -38.78 -0.38 -0.44 16 21 C -0.18 -2.09 9.42 -39.32 -0.37 -2.46 16 22 C 0.17 1.89 6.78 -81.94 -0.56 1.33 16 23 C -0.01 -0.08 5.91 -104.66 -0.62 -0.70 16 24 C -0.15 -1.06 9.49 -38.99 -0.37 -1.43 16 25 C 0.11 0.76 11.17 -17.61 -0.20 0.56 16 26 N -0.48 -4.25 10.34 -13.34 -0.14 -4.38 16 27 C 0.11 0.80 11.17 -17.61 -0.20 0.61 16 28 C -0.17 -1.26 9.61 -38.99 -0.37 -1.63 16 29 N -0.60 -7.82 5.22 -11.01 -0.06 -7.88 16 30 H 0.41 4.18 6.86 -40.82 -0.28 3.90 16 31 C 0.53 9.71 6.80 -14.91 -0.10 9.61 16 32 O -0.53 -11.35 15.12 5.04 0.08 -11.27 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.07 1.58 4.71 -51.93 -0.24 1.34 16 36 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.15 2.45 8.06 -52.48 -0.42 2.03 16 42 H 0.15 1.17 6.20 -52.49 -0.33 0.84 16 43 H 0.15 0.72 6.28 -52.48 -0.33 0.39 16 44 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.14 0.77 6.49 -52.49 -0.34 0.43 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -37.68 390.28 -9.98 -47.66 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.83 Total: 6.37 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -6.27 Total: -2.91 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.12 Total: -47.19 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.15 Total: -27.40 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.68 -9.98 -47.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058327105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.822 kcal (2) G-P(sol) polarization free energy of solvation -37.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds