Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47586 * 2 1 4 4 C 1.50708 * 109.46930 * 120.00496 * 2 1 3 5 5 H 1.07995 * 119.99946 * 119.99787 * 4 2 1 6 6 C 1.37876 * 119.99602 * 299.99927 * 4 2 1 7 7 N 1.31514 * 120.00221 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99850 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47137 * 59.99834 * 8 6 4 10 10 H 1.48502 * 109.47037 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47317 * 300.00007 * 8 6 4 12 12 N 1.46497 * 109.47109 * 240.00090 * 2 1 3 13 13 C 1.34774 * 120.00381 * 85.00371 * 12 2 1 14 14 O 1.21574 * 119.99512 * 359.97438 * 13 12 2 15 15 C 1.47622 * 120.00499 * 180.02562 * 13 12 2 16 16 C 1.39520 * 120.21014 * 353.70772 * 15 13 12 17 17 C 1.37929 * 119.96661 * 179.79549 * 16 15 13 18 18 C 1.38526 * 120.40856 * 0.48827 * 17 16 15 19 19 C 1.38029 * 120.42602 * 359.74560 * 18 17 16 20 20 C 1.39207 * 120.02527 * 0.02562 * 19 18 17 21 21 C 1.48188 * 120.20257 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.12766 * 119.38934 * 21 20 19 23 23 C 1.37995 * 119.86425 * 179.72033 * 22 21 20 24 24 C 1.38345 * 120.12841 * 0.55306 * 23 22 21 25 25 C 1.50701 * 119.86305 * 179.69921 * 24 23 22 26 26 N 1.46496 * 109.47191 * 270.01695 * 25 24 23 27 27 C 1.34948 * 126.03445 * 124.71944 * 26 25 24 28 28 C 1.35318 * 107.74243 * 179.84325 * 27 26 25 29 29 C 1.39869 * 107.92036 * 0.42030 * 28 27 26 30 30 N 1.30830 * 108.20490 * 359.74120 * 29 28 27 31 31 C 1.38332 * 120.26591 * 359.71650 * 24 23 22 32 32 C 1.37992 * 120.13057 * 0.02562 * 31 24 23 33 33 H 1.09003 * 109.46725 * 59.99273 * 1 2 3 34 34 H 1.09002 * 109.46907 * 300.00146 * 1 2 3 35 35 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 36 36 H 0.96995 * 120.00129 * 180.02562 * 7 6 4 37 37 H 0.97013 * 119.99996 * 265.00692 * 12 2 1 38 38 H 1.07998 * 120.01522 * 0.02562 * 16 15 13 39 39 H 1.08005 * 119.79527 * 180.25481 * 17 16 15 40 40 H 1.07995 * 119.78628 * 179.77251 * 18 17 16 41 41 H 1.08005 * 119.98995 * 180.02562 * 19 18 17 42 42 H 1.07995 * 120.06531 * 359.97041 * 22 21 20 43 43 H 1.07994 * 119.93465 * 180.29197 * 23 22 21 44 44 H 1.09000 * 109.47303 * 30.02285 * 25 24 23 45 45 H 1.09004 * 109.46672 * 150.01833 * 25 24 23 46 46 H 1.08004 * 126.12792 * 359.97438 * 27 26 25 47 47 H 1.08002 * 126.03518 * 180.16227 * 28 27 26 48 48 H 1.08000 * 125.89262 * 179.72022 * 29 28 27 49 49 H 1.08001 * 119.93536 * 179.97438 * 31 24 23 50 50 H 1.08003 * 120.06703 * 180.02562 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0078 10 1 1.8277 -0.4195 5.2204 11 1 1.8279 -2.5200 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1612 -2.4118 15 6 2.6387 -0.7143 -3.5626 16 6 3.0947 -2.0300 -3.4767 17 6 3.5490 -2.6769 -4.6070 18 6 3.5654 -2.0250 -5.8292 19 6 3.1226 -0.7217 -5.9322 20 6 2.6559 -0.0533 -4.8038 21 6 2.1801 1.3461 -4.9098 22 6 0.8640 1.6649 -4.5775 23 6 0.4283 2.9708 -4.6727 24 6 1.2912 3.9608 -5.1077 25 6 0.8072 5.3838 -5.2159 26 7 0.2589 5.6126 -6.5550 27 6 -0.9783 6.0711 -6.8386 28 6 -1.0921 6.1449 -8.1849 29 6 0.1135 5.7078 -8.7434 30 7 0.9240 5.3885 -7.7673 31 6 2.5964 3.6496 -5.4441 32 6 3.0451 2.3482 -5.3479 33 1 -0.3633 0.5140 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 0.7095 1.1616 3.4844 37 1 2.2490 -1.6319 -1.1526 38 1 3.0886 -2.5429 -2.5263 39 1 3.8975 -3.6969 -4.5381 40 1 3.9265 -2.5399 -6.7071 41 1 3.1381 -0.2203 -6.8887 42 1 0.1882 0.8920 -4.2425 43 1 -0.5895 3.2198 -4.4112 44 1 0.0319 5.5616 -4.4706 45 1 1.6403 6.0651 -5.0431 46 1 -1.7402 6.3341 -6.1197 47 1 -1.9618 6.4782 -8.7317 48 1 0.3365 5.6446 -9.7982 49 1 3.2654 4.4266 -5.7835 50 1 4.0645 2.1064 -5.6104 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = 99.990055 kcal Electronic energy + Delta-G solvation = -32999.814152 eV Core-core repulsion = 28765.703853 eV Total energy + Delta-G solvation = -4234.110299 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.19385 -40.19716 -38.63129 -37.82619 -34.95270 -34.24132 -32.57934 -31.92400 -31.21625 -30.70052 -30.19843 -29.25062 -28.58757 -26.11469 -25.28892 -23.79054 -22.91768 -22.38017 -21.45771 -21.09077 -20.80840 -20.23141 -19.46830 -17.98215 -17.36847 -16.71456 -16.00809 -15.92711 -15.51436 -15.29202 -14.94810 -14.65099 -14.56602 -14.36892 -14.18698 -14.08295 -13.90490 -13.83190 -13.20784 -13.09281 -13.04112 -12.88802 -12.59909 -12.39693 -12.29017 -12.11329 -11.91268 -11.65167 -11.48477 -11.12508 -10.98648 -10.94418 -10.84488 -10.75223 -10.69067 -10.35920 -10.26338 -9.50659 -9.40499 -9.09254 -8.98974 -8.87935 -8.68988 -8.63006 -8.52831 -7.99833 -7.90230 -6.15262 -4.24580 0.85570 1.16273 1.55599 1.74306 1.86862 2.59679 2.77899 3.23182 3.28540 3.29054 3.30609 4.00484 4.03679 4.13238 4.35060 4.38405 4.62417 4.73544 4.77274 4.87660 4.91203 4.95875 5.11743 5.14310 5.17224 5.19666 5.30021 5.41412 5.48351 5.51983 5.59340 5.66075 5.81331 5.83544 5.90270 5.91724 6.06542 6.25221 6.31222 6.40037 6.42124 6.54239 6.59147 6.70578 6.78960 6.81038 6.88205 6.91871 6.92860 7.11539 7.19477 7.41916 7.53444 7.65129 7.66464 7.88462 8.11563 8.62603 8.74920 9.08281 9.42969 10.90648 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.002460 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.396834 B =11380.774098 C =13881.989038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.535 3.465 14 O -0.532 6.532 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.001 4.001 21 C -0.019 4.019 22 C -0.050 4.050 23 C -0.100 4.100 24 C -0.112 4.112 25 C 0.175 3.825 26 N -0.362 5.362 27 C 0.052 3.948 28 C -0.280 4.280 29 C 0.036 3.964 30 N -0.286 5.286 31 C -0.090 4.090 32 C -0.109 4.109 33 H 0.014 0.986 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.386 0.614 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.172 0.828 47 H 0.144 0.856 48 H 0.179 0.821 49 H 0.119 0.881 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 2.760 -20.284 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.350 5.350 13 C 0.321 3.679 14 O -0.411 6.411 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.144 4.144 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.002 4.002 21 C -0.020 4.020 22 C -0.068 4.068 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.055 3.945 26 N -0.145 5.145 27 C -0.095 4.095 28 C -0.310 4.310 29 C -0.150 4.150 30 N -0.108 5.108 31 C -0.108 4.108 32 C -0.127 4.127 33 H 0.033 0.967 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.189 0.811 47 H 0.161 0.839 48 H 0.196 0.804 49 H 0.137 0.863 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.632 3.309 -19.639 19.926 hybrid contribution -0.441 -0.774 0.873 1.247 sum 0.191 2.536 -18.766 18.938 Atomic orbital electron populations 1.22068 0.98428 0.99061 1.00852 1.18735 0.90970 0.93980 0.79767 0.93261 1.21173 1.32542 1.13253 0.90356 0.92193 1.24875 0.94784 0.94947 0.99026 1.69886 1.35803 1.22370 1.23995 0.86513 0.79198 0.79598 0.81822 1.20167 1.21103 1.20147 1.46529 1.64597 1.13486 1.10412 1.18163 0.79371 0.87079 0.83321 1.90797 1.50761 1.15090 1.84441 1.20409 1.02230 0.94606 0.94187 1.21374 0.96774 0.93463 0.99121 1.21127 1.00593 1.00180 0.92540 1.21192 0.98698 0.94585 0.97750 1.21173 0.99576 0.94895 0.97764 1.18845 0.96454 0.92811 0.92101 1.18519 0.93831 0.91369 0.98233 1.20832 0.94696 0.96099 0.95168 1.20742 0.98913 0.92628 0.99579 1.19587 0.94779 0.93852 1.03034 1.20628 1.00255 0.94881 0.78724 1.48901 1.10273 1.49327 1.05960 1.22605 0.88985 1.00137 0.97744 1.21471 1.00929 1.15391 0.93181 1.23861 0.92679 0.99416 0.99084 1.77385 1.21374 1.22805 0.89197 1.20699 0.94941 0.96158 0.99018 1.20976 0.98882 0.92384 1.00497 0.96697 0.89140 0.95546 0.92513 0.78026 0.85180 0.85584 0.85707 0.85488 0.86722 0.86601 0.87750 0.89005 0.81124 0.83862 0.80415 0.86315 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.27 6.71 2.56 -69.08 -0.18 6.53 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -14.63 5.02 -55.95 -0.28 -14.91 16 13 C 0.54 10.81 7.53 -12.43 -0.09 10.72 16 14 O -0.53 -12.14 12.15 5.30 0.06 -12.07 16 15 C -0.11 -1.82 5.88 -104.69 -0.62 -2.44 16 16 C -0.09 -1.19 9.52 -39.22 -0.37 -1.56 16 17 C -0.13 -1.38 10.02 -39.59 -0.40 -1.78 16 18 C -0.10 -1.09 10.03 -39.55 -0.40 -1.49 16 19 C -0.12 -1.41 9.67 -39.30 -0.38 -1.79 16 20 C 0.00 -0.02 5.38 -104.55 -0.56 -0.58 16 21 C -0.02 -0.31 4.05 -104.92 -0.43 -0.73 16 22 C -0.05 -0.83 6.95 -39.22 -0.27 -1.10 16 23 C -0.10 -1.51 9.68 -39.63 -0.38 -1.89 16 24 C -0.11 -1.54 5.32 -104.55 -0.56 -2.10 16 25 C 0.18 1.92 6.63 -5.20 -0.03 1.88 16 26 N -0.36 -4.25 3.67 -62.55 -0.23 -4.48 16 27 C 0.05 0.50 11.45 -17.22 -0.20 0.31 16 28 C -0.28 -2.69 10.80 -40.01 -0.43 -3.12 16 29 C 0.04 0.38 12.02 -17.37 -0.21 0.17 16 30 N -0.29 -3.76 12.41 30.62 0.38 -3.38 16 31 C -0.09 -1.26 9.68 -39.64 -0.38 -1.64 16 32 C -0.11 -1.62 9.68 -39.23 -0.38 -2.00 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.39 7.02 6.61 -40.81 -0.27 6.75 16 38 H 0.13 1.58 6.45 -52.49 -0.34 1.24 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.11 1.96 7.99 -52.49 -0.42 1.54 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.10 0.91 8.01 -51.93 -0.42 0.50 16 45 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 46 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 49 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 50 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 421.23 15.07 6.35 6.35 Total: -1.00 -32.88 421.23 -11.20 -44.08 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.76 Total: 11.43 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -6.32 Total: -18.48 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.50 Total: -46.78 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.88 -11.20 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.068 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds