Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47586 * 2 1 4 4 C 1.50708 * 109.46930 * 120.00496 * 2 1 3 5 5 H 1.07995 * 119.99946 * 119.99787 * 4 2 1 6 6 C 1.37876 * 119.99602 * 299.99927 * 4 2 1 7 7 N 1.31514 * 120.00221 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99850 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47137 * 59.99834 * 8 6 4 10 10 H 1.48502 * 109.47037 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47317 * 300.00007 * 8 6 4 12 12 N 1.46497 * 109.47109 * 240.00090 * 2 1 3 13 13 C 1.34774 * 120.00381 * 85.00371 * 12 2 1 14 14 O 1.21574 * 119.99512 * 359.97438 * 13 12 2 15 15 C 1.47622 * 120.00499 * 180.02562 * 13 12 2 16 16 C 1.39520 * 120.21014 * 353.70772 * 15 13 12 17 17 C 1.37929 * 119.96661 * 179.79549 * 16 15 13 18 18 C 1.38526 * 120.40856 * 0.48827 * 17 16 15 19 19 C 1.38029 * 120.42602 * 359.74560 * 18 17 16 20 20 C 1.39207 * 120.02527 * 0.02562 * 19 18 17 21 21 C 1.48188 * 120.20257 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.12766 * 119.38934 * 21 20 19 23 23 C 1.37995 * 119.86425 * 179.72033 * 22 21 20 24 24 C 1.38345 * 120.12841 * 0.55306 * 23 22 21 25 25 C 1.50701 * 119.86305 * 179.69921 * 24 23 22 26 26 N 1.46496 * 109.47191 * 270.01695 * 25 24 23 27 27 C 1.34948 * 126.03445 * 124.71944 * 26 25 24 28 28 C 1.35318 * 107.74243 * 179.84325 * 27 26 25 29 29 C 1.39869 * 107.92036 * 0.42030 * 28 27 26 30 30 N 1.30830 * 108.20490 * 359.74120 * 29 28 27 31 31 C 1.38332 * 120.26591 * 359.71650 * 24 23 22 32 32 C 1.37992 * 120.13057 * 0.02562 * 31 24 23 33 33 H 1.09003 * 109.46725 * 59.99273 * 1 2 3 34 34 H 1.09002 * 109.46907 * 300.00146 * 1 2 3 35 35 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 36 36 H 0.96995 * 120.00129 * 180.02562 * 7 6 4 37 37 H 0.97013 * 119.99996 * 265.00692 * 12 2 1 38 38 H 1.07998 * 120.01522 * 0.02562 * 16 15 13 39 39 H 1.08005 * 119.79527 * 180.25481 * 17 16 15 40 40 H 1.07995 * 119.78628 * 179.77251 * 18 17 16 41 41 H 1.08005 * 119.98995 * 180.02562 * 19 18 17 42 42 H 1.07995 * 120.06531 * 359.97041 * 22 21 20 43 43 H 1.07994 * 119.93465 * 180.29197 * 23 22 21 44 44 H 1.09000 * 109.47303 * 30.02285 * 25 24 23 45 45 H 1.09004 * 109.46672 * 150.01833 * 25 24 23 46 46 H 1.08004 * 126.12792 * 359.97438 * 27 26 25 47 47 H 1.08002 * 126.03518 * 180.16227 * 28 27 26 48 48 H 1.08000 * 125.89262 * 179.72022 * 29 28 27 49 49 H 1.08001 * 119.93536 * 179.97438 * 31 24 23 50 50 H 1.08003 * 120.06703 * 180.02562 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0078 10 1 1.8277 -0.4195 5.2204 11 1 1.8279 -2.5200 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1612 -2.4118 15 6 2.6387 -0.7143 -3.5626 16 6 3.0947 -2.0300 -3.4767 17 6 3.5490 -2.6769 -4.6070 18 6 3.5654 -2.0250 -5.8292 19 6 3.1226 -0.7217 -5.9322 20 6 2.6559 -0.0533 -4.8038 21 6 2.1801 1.3461 -4.9098 22 6 0.8640 1.6649 -4.5775 23 6 0.4283 2.9708 -4.6727 24 6 1.2912 3.9608 -5.1077 25 6 0.8072 5.3838 -5.2159 26 7 0.2589 5.6126 -6.5550 27 6 -0.9783 6.0711 -6.8386 28 6 -1.0921 6.1449 -8.1849 29 6 0.1135 5.7078 -8.7434 30 7 0.9240 5.3885 -7.7673 31 6 2.5964 3.6496 -5.4441 32 6 3.0451 2.3482 -5.3479 33 1 -0.3633 0.5140 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 0.7095 1.1616 3.4844 37 1 2.2490 -1.6319 -1.1526 38 1 3.0886 -2.5429 -2.5263 39 1 3.8975 -3.6969 -4.5381 40 1 3.9265 -2.5399 -6.7071 41 1 3.1381 -0.2203 -6.8887 42 1 0.1882 0.8920 -4.2425 43 1 -0.5895 3.2198 -4.4112 44 1 0.0319 5.5616 -4.4706 45 1 1.6403 6.0651 -5.0431 46 1 -1.7402 6.3341 -6.1197 47 1 -1.9618 6.4782 -8.7317 48 1 0.3365 5.6446 -9.7982 49 1 3.2654 4.4266 -5.7835 50 1 4.0645 2.1064 -5.6104 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058377414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = 82.838353 kcal Electronic energy + Delta-G solvation = -33000.557906 eV Core-core repulsion = 28765.703853 eV Total energy + Delta-G solvation = -4234.854052 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.99735 -41.43150 -39.89692 -39.06455 -36.73267 -35.29957 -34.36623 -32.90770 -32.51527 -31.87225 -31.02393 -30.46762 -30.04962 -27.37073 -27.05731 -25.05454 -23.95814 -23.53255 -22.88757 -21.93814 -21.85797 -21.25605 -21.11494 -19.42254 -18.25907 -17.99563 -17.50398 -17.22303 -16.87915 -16.45811 -16.32834 -15.86253 -15.69762 -15.62205 -15.44431 -15.27593 -15.02874 -14.67127 -14.57476 -14.37217 -14.28770 -14.02577 -13.75708 -13.64837 -13.57903 -13.25482 -13.10421 -12.99306 -12.87583 -12.81658 -12.72359 -12.45209 -12.28904 -12.16990 -11.99756 -11.91029 -11.51240 -11.13766 -10.85543 -10.60993 -10.34607 -10.05130 -10.03012 -9.80163 -9.60252 -9.47124 -9.16625 -8.19194 -6.36766 -0.24333 0.14226 0.51411 0.58767 1.07596 1.43201 1.45288 1.53026 1.76412 2.02585 2.04349 2.33067 2.59660 2.84070 2.94878 3.11218 3.49140 3.62433 3.80263 3.86713 3.91365 4.02272 4.06084 4.10630 4.16375 4.30113 4.36744 4.45169 4.47056 4.48503 4.68828 4.70373 4.77867 4.80231 4.89718 4.93152 4.94331 5.02231 5.07438 5.11230 5.20098 5.31820 5.36223 5.43109 5.45706 5.48503 5.57061 5.58839 5.65592 5.67996 5.81839 5.88981 5.94705 6.06040 6.07914 6.17878 6.70052 6.85571 6.95422 7.30268 7.52907 8.86875 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.002460 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.396834 B =11380.774098 C =13881.989038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.277 3.723 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.702 5.702 13 C 0.531 3.469 14 O -0.567 6.567 15 C -0.141 4.141 16 C -0.092 4.092 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.017 4.017 21 C -0.033 4.033 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.112 4.112 25 C 0.176 3.824 26 N -0.374 5.374 27 C 0.047 3.953 28 C -0.286 4.286 29 C 0.030 3.970 30 N -0.330 5.330 31 C -0.096 4.096 32 C -0.119 4.119 33 H 0.011 0.989 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.400 0.600 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.201 0.799 47 H 0.167 0.833 48 H 0.202 0.798 49 H 0.133 0.867 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 0.966 -21.830 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.174 3.826 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.352 5.352 13 C 0.319 3.681 14 O -0.448 6.448 15 C -0.144 4.144 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.136 4.136 20 C -0.018 4.018 21 C -0.034 4.034 22 C -0.091 4.091 23 C -0.132 4.132 24 C -0.113 4.113 25 C 0.056 3.944 26 N -0.156 5.156 27 C -0.098 4.098 28 C -0.315 4.315 29 C -0.156 4.156 30 N -0.151 5.151 31 C -0.115 4.115 32 C -0.137 4.137 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.118 0.882 46 H 0.218 0.782 47 H 0.184 0.816 48 H 0.218 0.782 49 H 0.151 0.849 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.592 1.485 -21.218 21.330 hybrid contribution -0.744 -0.194 1.210 1.434 sum 0.848 1.291 -20.008 20.068 Atomic orbital electron populations 1.21870 0.98298 0.99228 0.99500 1.18289 0.90996 0.91799 0.81566 0.98374 1.21504 1.32713 1.13609 0.90856 0.91034 1.25790 0.94843 0.95585 1.02267 1.70040 1.36899 1.23825 1.24671 0.85407 0.78624 0.78771 0.77597 1.19653 1.21100 1.18786 1.46258 1.65203 1.14042 1.09663 1.18824 0.78312 0.86849 0.84091 1.90768 1.52077 1.16813 1.85124 1.20116 1.05470 0.96123 0.92707 1.21555 0.96517 0.92244 1.00752 1.21548 0.98937 1.01557 0.91539 1.21693 0.96088 0.93556 0.99018 1.21427 0.99014 0.95798 0.97312 1.18994 0.97407 0.92652 0.92779 1.18730 0.93691 0.92546 0.98384 1.20841 0.95230 0.96413 0.96615 1.20955 0.99786 0.92563 0.99920 1.19873 0.94509 0.95143 1.01781 1.20691 1.01376 0.93031 0.79321 1.48915 1.10969 1.50061 1.05655 1.23215 0.88761 0.99128 0.98732 1.21839 1.01323 1.15037 0.93349 1.24394 0.92859 0.98408 0.99936 1.77326 1.22977 1.24678 0.90152 1.20981 0.95448 0.96373 0.98667 1.21229 0.99449 0.92539 1.00499 0.97020 0.91398 0.94402 0.92524 0.76417 0.84415 0.81893 0.81617 0.83816 0.88648 0.85690 0.85712 0.88187 0.78193 0.81566 0.78153 0.84866 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.02 16 2 C 0.28 14.57 2.56 44.25 0.11 14.68 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.70 -30.40 5.02 -449.20 -2.25 -32.65 16 13 C 0.53 22.58 7.53 86.72 0.65 23.24 16 14 O -0.57 -27.76 12.15 -3.95 -0.05 -27.80 16 15 C -0.14 -4.69 5.88 -19.91 -0.12 -4.81 16 16 C -0.09 -2.33 9.52 22.51 0.21 -2.12 16 17 C -0.12 -2.14 10.02 22.27 0.22 -1.92 16 18 C -0.09 -1.45 10.03 22.29 0.22 -1.22 16 19 C -0.12 -2.63 9.67 22.45 0.22 -2.42 16 20 C -0.02 -0.53 5.38 -19.82 -0.11 -0.64 16 21 C -0.03 -1.12 4.05 -20.06 -0.08 -1.20 16 22 C -0.07 -2.60 6.95 22.50 0.16 -2.44 16 23 C -0.11 -3.63 9.68 22.24 0.22 -3.42 16 24 C -0.11 -3.20 5.32 -19.82 -0.11 -3.31 16 25 C 0.18 3.84 6.63 85.63 0.57 4.40 16 26 N -0.37 -8.58 3.67 -351.79 -1.29 -9.87 16 27 C 0.05 0.86 11.45 83.54 0.96 1.82 16 28 C -0.29 -5.06 10.80 21.99 0.24 -4.83 16 29 C 0.03 0.61 12.02 85.24 1.02 1.63 16 30 N -0.33 -8.57 12.41 -57.03 -0.71 -9.28 16 31 C -0.10 -2.78 9.68 22.23 0.22 -2.56 16 32 C -0.12 -3.63 9.68 22.50 0.22 -3.41 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.40 14.74 6.61 -92.70 -0.61 14.13 16 38 H 0.14 3.15 6.45 -2.91 -0.02 3.13 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.10 3.62 7.99 -2.91 -0.02 3.60 16 43 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.12 2.13 8.01 -2.39 -0.02 2.11 16 45 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 46 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 47 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 48 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 50 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -75.85 421.23 4.48 -71.37 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.35 Total: 38.92 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 6.16 Total: -22.32 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.01 Total: -104.20 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -75.85 4.48 -71.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.204 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds