Wall clock time and date at job start Tue Mar 31 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.50700 * 109.47161 * 240.00439 * 2 1 3 5 5 H 1.08000 * 119.99643 * 239.99683 * 4 2 1 6 6 C 1.37871 * 120.00199 * 59.99630 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00058 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47222 * 89.99904 * 8 6 4 10 10 H 1.48496 * 109.47382 * 210.00423 * 8 6 4 11 11 H 1.48507 * 109.47038 * 330.00421 * 8 6 4 12 12 N 1.46499 * 109.47272 * 119.99887 * 2 1 3 13 13 C 1.34771 * 120.00078 * 275.00347 * 12 2 1 14 14 O 1.21569 * 120.00365 * 0.02562 * 13 12 2 15 15 C 1.47629 * 119.99947 * 179.97438 * 13 12 2 16 16 C 1.39516 * 120.21464 * 336.14627 * 15 13 12 17 17 C 1.37927 * 119.97097 * 179.97438 * 16 15 13 18 18 C 1.38519 * 120.40558 * 359.97438 * 17 16 15 19 19 C 1.38033 * 120.43091 * 359.74326 * 18 17 16 20 20 C 1.39207 * 120.01575 * 0.50937 * 19 18 17 21 21 C 1.48191 * 120.19463 * 179.77109 * 20 19 18 22 22 C 1.39435 * 120.13067 * 303.15558 * 21 20 19 23 23 C 1.37990 * 119.86557 * 180.02562 * 22 21 20 24 24 C 1.38341 * 120.13380 * 359.97438 * 23 22 21 25 25 C 1.50701 * 119.86953 * 180.02562 * 24 23 22 26 26 N 1.46498 * 109.47305 * 90.00397 * 25 24 23 27 27 C 1.34945 * 126.04035 * 124.97156 * 26 25 24 28 28 C 1.35316 * 107.74586 * 180.02562 * 27 26 25 29 29 C 1.39868 * 107.92273 * 0.02562 * 28 27 26 30 30 N 1.30836 * 108.20130 * 359.97438 * 29 28 27 31 31 C 1.38333 * 120.26050 * 0.30298 * 24 23 22 32 32 C 1.37987 * 120.13307 * 359.44539 * 31 24 23 33 33 H 1.08995 * 109.47113 * 60.00266 * 1 2 3 34 34 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47241 * 299.99581 * 1 2 3 36 36 H 0.96999 * 119.99558 * 179.97438 * 7 6 4 37 37 H 0.97007 * 119.99420 * 94.99901 * 12 2 1 38 38 H 1.08000 * 120.01023 * 359.97438 * 16 15 13 39 39 H 1.08002 * 119.79654 * 179.97438 * 17 16 15 40 40 H 1.08004 * 119.78384 * 179.97438 * 18 17 16 41 41 H 1.08004 * 119.98770 * 180.28290 * 19 18 17 42 42 H 1.07995 * 120.07008 * 0.04510 * 22 21 20 43 43 H 1.08006 * 119.93524 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47149 * 329.99928 * 25 24 23 45 45 H 1.08998 * 109.47078 * 210.00360 * 25 24 23 46 46 H 1.07999 * 126.12091 * 0.02562 * 27 26 25 47 47 H 1.08002 * 126.03695 * 180.02562 * 28 27 26 48 48 H 1.07996 * 125.90038 * 180.25933 * 29 28 27 49 49 H 1.08001 * 119.93643 * 179.70139 * 31 24 23 50 50 H 1.08002 * 120.06896 * 180.29592 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1612 2.4119 15 6 2.6387 -0.7143 3.5626 16 6 2.5049 -2.0983 3.6779 17 6 2.9665 -2.7435 4.8061 18 6 3.5643 -2.0259 5.8290 19 6 3.7105 -0.6569 5.7299 20 6 3.2463 0.0131 4.6014 21 6 3.3966 1.4834 4.4931 22 6 2.8625 2.3158 5.4759 23 6 3.0052 3.6842 5.3693 24 6 3.6770 4.2304 4.2904 25 6 3.8298 5.7256 4.1802 26 7 5.0659 6.1407 4.8480 27 6 6.0651 6.8588 4.2939 28 6 7.0213 7.0304 5.2359 29 6 6.5920 6.3948 6.4056 30 7 5.4199 5.8614 6.1743 31 6 4.2039 3.4099 3.3092 32 6 4.0721 2.0399 3.4076 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3634 0.5138 0.8900 36 1 0.7095 1.1619 -3.4843 37 1 2.2491 -1.6318 1.1525 38 1 2.0401 -2.6640 2.8839 39 1 2.8611 -3.8149 4.8926 40 1 3.9218 -2.5413 6.7082 41 1 4.1818 -0.1050 6.5297 42 1 2.3386 1.8906 6.3191 43 1 2.5924 4.3301 6.1302 44 1 2.9788 6.2138 4.6550 45 1 3.8717 6.0101 3.1288 46 1 6.0960 7.2300 3.2801 47 1 7.9515 7.5638 5.1072 48 1 7.1324 6.3556 7.3398 49 1 4.7232 3.8422 2.4667 50 1 4.4881 1.4000 2.6434 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:55 Heat of formation + Delta-G solvation = 96.824675 kcal Electronic energy + Delta-G solvation = -33026.105030 eV Core-core repulsion = 28791.857471 eV Total energy + Delta-G solvation = -4234.247560 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.19095 -40.19381 -38.64792 -37.83277 -34.91841 -34.26857 -32.55278 -31.95154 -31.23525 -30.71082 -30.19609 -29.24854 -28.60073 -26.12445 -25.28635 -23.81127 -22.95636 -22.35071 -21.45442 -21.08490 -20.80565 -20.24220 -19.46661 -17.94965 -17.36979 -16.73886 -16.03061 -15.89411 -15.51068 -15.34892 -14.97577 -14.79050 -14.52962 -14.32328 -14.21983 -14.06691 -13.83265 -13.70879 -13.24124 -13.08415 -13.00037 -12.89149 -12.68722 -12.43595 -12.32334 -12.08180 -11.89940 -11.69716 -11.47250 -11.13702 -11.00174 -10.92734 -10.85062 -10.76391 -10.69290 -10.35273 -10.26826 -9.50208 -9.38537 -9.07821 -8.99187 -8.88067 -8.68830 -8.65243 -8.57628 -8.10199 -7.88308 -6.15718 -4.25013 0.85328 1.15927 1.57186 1.70243 1.87005 2.59452 2.78434 3.21400 3.28412 3.29873 3.31203 3.93968 4.00935 4.12816 4.34578 4.37666 4.61446 4.74183 4.76380 4.89253 4.91680 4.95741 5.10755 5.14580 5.17023 5.18550 5.27993 5.42490 5.48551 5.50124 5.57455 5.66579 5.80692 5.81409 5.91062 5.92535 6.04715 6.22230 6.31059 6.39947 6.41058 6.53497 6.58271 6.67983 6.78089 6.80007 6.88191 6.92057 6.94560 7.12232 7.16365 7.41997 7.53684 7.65292 7.66494 7.88468 8.11599 8.62687 8.74880 9.08318 9.42723 10.90165 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.002666 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.051135 B =10499.607764 C =13165.998117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.536 3.464 14 O -0.532 6.532 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.125 4.125 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.003 4.003 21 C -0.017 4.017 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.113 4.113 25 C 0.175 3.825 26 N -0.363 5.363 27 C 0.052 3.948 28 C -0.280 4.280 29 C 0.036 3.964 30 N -0.287 5.287 31 C -0.094 4.094 32 C -0.069 4.069 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.387 0.613 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.172 0.828 47 H 0.144 0.856 48 H 0.179 0.821 49 H 0.118 0.882 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 3.856 17.221 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.321 3.679 14 O -0.411 6.411 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.004 4.004 21 C -0.018 4.018 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.114 4.114 25 C 0.055 3.945 26 N -0.145 5.145 27 C -0.094 4.094 28 C -0.309 4.309 29 C -0.150 4.150 30 N -0.108 5.108 31 C -0.113 4.113 32 C -0.087 4.087 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.220 0.780 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.189 0.811 47 H 0.162 0.838 48 H 0.196 0.804 49 H 0.136 0.864 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.999 4.145 17.455 19.257 hybrid contribution 1.010 -0.598 -1.419 1.841 sum 8.009 3.547 16.036 18.272 Atomic orbital electron populations 1.22078 0.98441 0.99098 1.00928 1.18737 0.90975 0.93950 0.79786 0.93289 1.21212 1.32465 1.13234 0.90332 0.92128 1.24875 0.94801 0.94929 0.99022 1.69903 1.35873 1.22384 1.23875 0.86464 0.79197 0.79315 0.82232 1.20522 1.21051 1.19847 1.46519 1.64629 1.13494 1.10403 1.18152 0.79448 0.86998 0.83276 1.90792 1.50449 1.15040 1.84788 1.20420 1.01210 0.93724 0.95822 1.21357 0.98256 0.93074 0.98204 1.21123 0.99227 1.00076 0.93900 1.21183 0.98479 0.93955 0.98761 1.21163 1.00500 0.94466 0.97155 1.18821 0.96330 0.92213 0.93069 1.18549 0.97323 0.90980 0.94915 1.20979 1.00086 0.93085 0.98448 1.20730 0.98282 0.94693 0.96802 1.19603 1.01507 0.93559 0.96694 1.20625 0.83772 0.92648 0.97433 1.48889 1.15982 1.40783 1.08862 1.22610 0.89523 0.97299 0.99990 1.21474 1.02918 1.12519 0.94034 1.23862 0.93869 0.97671 0.99605 1.77379 1.15981 1.22882 0.94575 1.20783 0.99175 0.93405 0.97916 1.20949 0.97246 0.94726 0.95759 0.89128 0.95529 0.96621 0.92576 0.77978 0.85150 0.85593 0.85712 0.85485 0.86239 0.86219 0.88988 0.87701 0.81094 0.83842 0.80405 0.86404 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.70 -14.62 4.99 -55.95 -0.28 -14.90 16 13 C 0.54 10.86 6.80 -12.43 -0.08 10.77 16 14 O -0.53 -12.35 13.15 5.31 0.07 -12.28 16 15 C -0.11 -1.79 5.86 -104.69 -0.61 -2.40 16 16 C -0.09 -1.21 9.37 -39.22 -0.37 -1.58 16 17 C -0.13 -1.37 10.02 -39.59 -0.40 -1.77 16 18 C -0.11 -1.11 10.02 -39.55 -0.40 -1.51 16 19 C -0.11 -1.41 9.62 -39.30 -0.38 -1.78 16 20 C 0.00 -0.05 5.42 -104.55 -0.57 -0.62 16 21 C -0.02 -0.28 4.09 -104.91 -0.43 -0.71 16 22 C -0.11 -1.59 9.63 -39.23 -0.38 -1.96 16 23 C -0.09 -1.21 9.68 -39.63 -0.38 -1.59 16 24 C -0.11 -1.56 5.32 -104.55 -0.56 -2.12 16 25 C 0.18 1.93 6.63 -5.19 -0.03 1.89 16 26 N -0.36 -4.30 3.67 -62.55 -0.23 -4.53 16 27 C 0.05 0.52 11.45 -17.22 -0.20 0.32 16 28 C -0.28 -2.74 10.80 -40.01 -0.43 -3.17 16 29 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 30 N -0.29 -3.78 12.41 30.62 0.38 -3.40 16 31 C -0.09 -1.45 9.68 -39.64 -0.38 -1.83 16 32 C -0.07 -1.17 7.29 -39.23 -0.29 -1.45 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.39 7.05 7.13 -40.82 -0.29 6.76 16 38 H 0.13 1.59 7.03 -52.49 -0.37 1.22 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 46 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 50 H 0.12 2.07 7.79 -52.49 -0.41 1.66 16 LS Contribution 422.50 15.07 6.37 6.37 Total: -1.00 -33.01 422.50 -11.21 -44.22 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.81 Total: 11.74 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -6.32 Total: -18.68 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.50 Total: -46.75 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.01 -11.21 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.049 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds