Wall clock time and date at job start Tue Mar 31 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.50700 * 109.47161 * 240.00439 * 2 1 3 5 5 H 1.08000 * 119.99643 * 239.99683 * 4 2 1 6 6 C 1.37871 * 120.00199 * 59.99630 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00058 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47222 * 89.99904 * 8 6 4 10 10 H 1.48496 * 109.47382 * 210.00423 * 8 6 4 11 11 H 1.48507 * 109.47038 * 330.00421 * 8 6 4 12 12 N 1.46499 * 109.47272 * 119.99887 * 2 1 3 13 13 C 1.34771 * 120.00078 * 275.00347 * 12 2 1 14 14 O 1.21569 * 120.00365 * 0.02562 * 13 12 2 15 15 C 1.47629 * 119.99947 * 179.97438 * 13 12 2 16 16 C 1.39516 * 120.21464 * 336.14627 * 15 13 12 17 17 C 1.37927 * 119.97097 * 179.97438 * 16 15 13 18 18 C 1.38519 * 120.40558 * 359.97438 * 17 16 15 19 19 C 1.38033 * 120.43091 * 359.74326 * 18 17 16 20 20 C 1.39207 * 120.01575 * 0.50937 * 19 18 17 21 21 C 1.48191 * 120.19463 * 179.77109 * 20 19 18 22 22 C 1.39435 * 120.13067 * 303.15558 * 21 20 19 23 23 C 1.37990 * 119.86557 * 180.02562 * 22 21 20 24 24 C 1.38341 * 120.13380 * 359.97438 * 23 22 21 25 25 C 1.50701 * 119.86953 * 180.02562 * 24 23 22 26 26 N 1.46498 * 109.47305 * 90.00397 * 25 24 23 27 27 C 1.34945 * 126.04035 * 124.97156 * 26 25 24 28 28 C 1.35316 * 107.74586 * 180.02562 * 27 26 25 29 29 C 1.39868 * 107.92273 * 0.02562 * 28 27 26 30 30 N 1.30836 * 108.20130 * 359.97438 * 29 28 27 31 31 C 1.38333 * 120.26050 * 0.30298 * 24 23 22 32 32 C 1.37987 * 120.13307 * 359.44539 * 31 24 23 33 33 H 1.08995 * 109.47113 * 60.00266 * 1 2 3 34 34 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47241 * 299.99581 * 1 2 3 36 36 H 0.96999 * 119.99558 * 179.97438 * 7 6 4 37 37 H 0.97007 * 119.99420 * 94.99901 * 12 2 1 38 38 H 1.08000 * 120.01023 * 359.97438 * 16 15 13 39 39 H 1.08002 * 119.79654 * 179.97438 * 17 16 15 40 40 H 1.08004 * 119.78384 * 179.97438 * 18 17 16 41 41 H 1.08004 * 119.98770 * 180.28290 * 19 18 17 42 42 H 1.07995 * 120.07008 * 0.04510 * 22 21 20 43 43 H 1.08006 * 119.93524 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47149 * 329.99928 * 25 24 23 45 45 H 1.08998 * 109.47078 * 210.00360 * 25 24 23 46 46 H 1.07999 * 126.12091 * 0.02562 * 27 26 25 47 47 H 1.08002 * 126.03695 * 180.02562 * 28 27 26 48 48 H 1.07996 * 125.90038 * 180.25933 * 29 28 27 49 49 H 1.08001 * 119.93643 * 179.70139 * 31 24 23 50 50 H 1.08002 * 120.06896 * 180.29592 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1612 2.4119 15 6 2.6387 -0.7143 3.5626 16 6 2.5049 -2.0983 3.6779 17 6 2.9665 -2.7435 4.8061 18 6 3.5643 -2.0259 5.8290 19 6 3.7105 -0.6569 5.7299 20 6 3.2463 0.0131 4.6014 21 6 3.3966 1.4834 4.4931 22 6 2.8625 2.3158 5.4759 23 6 3.0052 3.6842 5.3693 24 6 3.6770 4.2304 4.2904 25 6 3.8298 5.7256 4.1802 26 7 5.0659 6.1407 4.8480 27 6 6.0651 6.8588 4.2939 28 6 7.0213 7.0304 5.2359 29 6 6.5920 6.3948 6.4056 30 7 5.4199 5.8614 6.1743 31 6 4.2039 3.4099 3.3092 32 6 4.0721 2.0399 3.4076 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3634 0.5138 0.8900 36 1 0.7095 1.1619 -3.4843 37 1 2.2491 -1.6318 1.1525 38 1 2.0401 -2.6640 2.8839 39 1 2.8611 -3.8149 4.8926 40 1 3.9218 -2.5413 6.7082 41 1 4.1818 -0.1050 6.5297 42 1 2.3386 1.8906 6.3191 43 1 2.5924 4.3301 6.1302 44 1 2.9788 6.2138 4.6550 45 1 3.8717 6.0101 3.1288 46 1 6.0960 7.2300 3.2801 47 1 7.9515 7.5638 5.1072 48 1 7.1324 6.3556 7.3398 49 1 4.7232 3.8422 2.4667 50 1 4.4881 1.4000 2.6434 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058377416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:53 Heat of formation + Delta-G solvation = 79.412331 kcal Electronic energy + Delta-G solvation = -33026.860086 eV Core-core repulsion = 28791.857471 eV Total energy + Delta-G solvation = -4235.002616 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.00643 -41.43488 -39.92951 -39.07881 -36.72586 -35.31547 -34.36745 -32.93519 -32.52660 -31.89305 -31.03216 -30.48891 -30.06645 -27.37548 -27.07336 -25.08115 -24.00993 -23.51801 -22.87212 -21.95302 -21.86652 -21.26921 -21.12939 -19.41008 -18.26903 -18.00594 -17.52263 -17.21321 -16.93334 -16.51630 -16.37238 -15.99415 -15.75059 -15.44467 -15.41618 -15.18063 -15.02532 -14.67150 -14.58481 -14.41146 -14.32231 -14.03539 -13.84209 -13.64605 -13.60403 -13.28942 -13.11113 -13.00032 -12.87041 -12.84331 -12.73319 -12.45585 -12.30738 -12.16772 -12.02636 -11.92590 -11.52539 -11.13041 -10.84195 -10.61015 -10.35319 -10.13569 -10.03466 -9.85885 -9.62558 -9.48297 -9.21166 -8.19719 -6.37260 -0.24464 0.12885 0.49446 0.56437 1.06510 1.42787 1.43380 1.53937 1.75260 1.99891 2.01846 2.32742 2.58972 2.77466 2.94207 3.10795 3.46799 3.60214 3.78245 3.86128 3.93404 3.99482 4.02567 4.09667 4.16233 4.28989 4.34645 4.43137 4.45950 4.47712 4.65999 4.69912 4.76640 4.78963 4.89475 4.92320 4.93683 5.00405 5.06823 5.07347 5.19410 5.30963 5.34355 5.42049 5.44216 5.47718 5.53433 5.58357 5.62452 5.67427 5.81147 5.88436 5.94204 6.02239 6.07312 6.16579 6.69772 6.84522 6.94313 7.29810 7.51818 8.86563 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.002666 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.051135 B =10499.607764 C =13165.998117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.265 1.265 12 N -0.702 5.702 13 C 0.535 3.465 14 O -0.571 6.571 15 C -0.139 4.139 16 C -0.094 4.094 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.021 4.021 21 C -0.031 4.031 22 C -0.116 4.116 23 C -0.091 4.091 24 C -0.112 4.112 25 C 0.176 3.824 26 N -0.374 5.374 27 C 0.047 3.953 28 C -0.286 4.286 29 C 0.030 3.970 30 N -0.328 5.328 31 C -0.110 4.110 32 C -0.094 4.094 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.401 0.599 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.200 0.800 47 H 0.167 0.833 48 H 0.202 0.798 49 H 0.123 0.877 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 2.099 18.826 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.174 3.826 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.351 5.351 13 C 0.323 3.677 14 O -0.452 6.452 15 C -0.142 4.142 16 C -0.112 4.112 17 C -0.134 4.134 18 C -0.105 4.105 19 C -0.134 4.134 20 C -0.022 4.022 21 C -0.031 4.031 22 C -0.134 4.134 23 C -0.109 4.109 24 C -0.113 4.113 25 C 0.056 3.944 26 N -0.157 5.157 27 C -0.099 4.099 28 C -0.315 4.315 29 C -0.156 4.156 30 N -0.150 5.150 31 C -0.128 4.128 32 C -0.113 4.113 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.217 0.783 47 H 0.184 0.816 48 H 0.219 0.781 49 H 0.141 0.859 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.246 2.357 19.087 20.925 hybrid contribution 0.686 -0.028 -1.808 1.934 sum 8.932 2.329 17.279 19.590 Atomic orbital electron populations 1.21892 0.98383 0.99356 0.99470 1.18293 0.90927 0.91838 0.81565 0.98292 1.21515 1.32651 1.13544 0.90846 0.91144 1.25772 0.94836 0.95547 1.02213 1.70051 1.36932 1.23813 1.24612 0.85364 0.78965 0.78115 0.78016 1.19539 1.21106 1.18958 1.46250 1.65140 1.14029 1.09654 1.18785 0.78229 0.86655 0.84060 1.90753 1.51925 1.16916 1.85558 1.20131 1.04300 0.95098 0.94692 1.21540 0.98319 0.91687 0.99681 1.21549 0.97494 1.01871 0.92503 1.21690 0.96146 0.93092 0.99614 1.21425 1.00013 0.95591 0.96349 1.18978 0.97286 0.91860 0.94065 1.18760 0.97291 0.92135 0.94903 1.21256 0.99932 0.93430 0.98736 1.21036 0.97908 0.94832 0.97153 1.19881 1.00402 0.95170 0.95867 1.20696 0.84342 0.90619 0.98765 1.48912 1.16501 1.41475 1.08765 1.23207 0.88873 0.96493 1.01321 1.21840 1.03729 1.12406 0.93569 1.24398 0.93377 0.96835 1.00947 1.77318 1.17435 1.24628 0.95642 1.20965 0.99853 0.93207 0.98820 1.20925 0.98888 0.95313 0.96149 0.91366 0.94196 0.97171 0.92514 0.76397 0.84373 0.81862 0.81585 0.83717 0.84422 0.84456 0.87896 0.85833 0.78284 0.81586 0.78092 0.85885 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.28 14.60 2.56 44.25 0.11 14.71 16 3 H 0.00 -0.05 7.58 -2.38 -0.02 -0.07 16 4 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.54 11.32 21.45 0.24 -52.30 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 N -0.70 -30.50 4.99 -449.19 -2.24 -32.74 16 13 C 0.54 22.89 6.80 86.72 0.59 23.48 16 14 O -0.57 -28.49 13.15 -3.93 -0.05 -28.54 16 15 C -0.14 -4.66 5.86 -19.91 -0.12 -4.78 16 16 C -0.09 -2.38 9.37 22.50 0.21 -2.17 16 17 C -0.12 -2.11 10.02 22.26 0.22 -1.89 16 18 C -0.09 -1.48 10.02 22.29 0.22 -1.26 16 19 C -0.12 -2.60 9.62 22.45 0.22 -2.38 16 20 C -0.02 -0.65 5.42 -19.82 -0.11 -0.75 16 21 C -0.03 -1.04 4.09 -20.05 -0.08 -1.12 16 22 C -0.12 -3.47 9.63 22.50 0.22 -3.25 16 23 C -0.09 -2.58 9.68 22.24 0.22 -2.36 16 24 C -0.11 -3.22 5.32 -19.82 -0.11 -3.33 16 25 C 0.18 3.85 6.63 85.63 0.57 4.42 16 26 N -0.37 -8.68 3.67 -351.80 -1.29 -9.97 16 27 C 0.05 0.87 11.45 83.54 0.96 1.83 16 28 C -0.29 -5.18 10.80 21.99 0.24 -4.95 16 29 C 0.03 0.62 12.03 85.24 1.02 1.65 16 30 N -0.33 -8.55 12.41 -57.03 -0.71 -9.26 16 31 C -0.11 -3.62 9.68 22.23 0.22 -3.41 16 32 C -0.09 -3.49 7.29 22.50 0.16 -3.32 16 33 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 34 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.40 14.90 7.13 -92.70 -0.66 14.24 16 38 H 0.14 3.18 7.03 -2.91 -0.02 3.16 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 45 H 0.12 2.16 8.01 -2.39 -0.02 2.14 16 46 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 48 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 49 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 50 H 0.09 3.69 7.79 -2.91 -0.02 3.66 16 Total: -1.00 -76.42 422.50 4.38 -72.04 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.30 Total: 39.45 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 6.10 Total: -22.72 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.00 Total: -104.26 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.54 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.42 4.38 -72.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.455 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds