Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35954 * 116.99623 * 2 1 4 4 C 1.37950 * 120.05608 * 0.02562 * 3 2 1 5 5 C 1.40363 * 119.68921 * 180.02562 * 4 3 2 6 6 C 1.46217 * 120.10573 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00165 * 136.67443 * 6 5 4 8 8 C 1.47627 * 121.48067 * 347.29475 * 7 6 5 9 9 O 1.21650 * 120.92285 * 0.02562 * 8 7 6 10 10 N 1.34907 * 118.16302 * 179.76093 * 8 7 6 11 11 C 1.46500 * 119.22716 * 180.24724 * 10 8 7 12 12 C 1.34022 * 121.54043 * 0.53259 * 10 8 7 13 13 S 1.71198 * 118.22127 * 179.73195 * 12 10 8 14 14 N 1.34020 * 123.55406 * 359.71615 * 12 10 8 15 15 C 1.46499 * 119.23348 * 180.02562 * 14 12 10 16 16 C 1.34906 * 121.54331 * 0.02562 * 14 12 10 17 17 O 1.21645 * 120.91781 * 179.97438 * 16 14 12 18 18 C 1.40381 * 119.78805 * 359.97438 * 5 4 3 19 19 C 1.36487 * 120.09812 * 359.97253 * 18 5 4 20 20 C 1.39193 * 120.31579 * 359.77358 * 19 18 5 21 21 O 1.35504 * 119.89395 * 180.27621 * 20 19 18 22 22 C 1.34707 * 117.00262 * 6.12963 * 21 20 19 23 23 H 1.08002 * 119.99926 * 5.66089 * 22 21 20 24 24 C 1.38801 * 120.00274 * 185.66045 * 22 21 20 25 25 N 1.31459 * 120.00017 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00370 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47159 * 59.99701 * 26 24 22 28 28 H 1.48493 * 109.47183 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46875 * 300.00304 * 26 24 22 30 30 H 1.08993 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46833 * 59.99652 * 1 2 3 32 32 H 1.09000 * 109.47196 * 299.99918 * 1 2 3 33 33 H 1.07998 * 120.15163 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00001 * 316.67318 * 6 5 4 35 35 H 1.09009 * 109.46666 * 180.28147 * 11 10 8 36 36 H 1.09001 * 109.47139 * 300.27951 * 11 10 8 37 37 H 1.09004 * 109.47296 * 60.28533 * 11 10 8 38 38 H 1.08998 * 109.47650 * 269.98196 * 15 14 12 39 39 H 1.09007 * 109.46765 * 29.97454 * 15 14 12 40 40 H 1.08997 * 109.47440 * 149.97239 * 15 14 12 41 41 H 1.07998 * 119.95018 * 180.02562 * 18 5 4 42 42 H 1.07997 * 119.84455 * 180.02562 * 19 18 5 43 43 H 0.97001 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2959 2.3690 0.0005 5 6 1.9410 3.6156 0.0000 6 6 1.1547 4.8484 0.0000 7 6 1.5176 5.8996 0.8210 8 6 2.5086 5.7274 1.9015 9 8 3.0364 4.6495 2.0998 10 7 2.8168 6.7999 2.6597 11 6 3.8014 6.6566 3.7350 12 6 2.2392 7.9919 2.4557 13 16 2.6886 9.2938 3.4726 14 7 1.3292 8.2201 1.4987 15 6 0.7584 9.5621 1.3595 16 6 0.9263 7.2428 0.6605 17 8 0.0991 7.4624 -0.2039 18 6 3.3436 3.6750 -0.0006 19 6 4.0774 2.5242 0.0000 20 6 3.4420 1.2858 0.0059 21 8 4.1789 0.1486 0.0121 22 6 5.5129 0.2850 0.1403 23 1 5.9409 1.2595 0.3239 24 6 6.3374 -0.8267 0.0366 25 7 5.8166 -2.0128 -0.1873 26 14 8.1873 -0.6377 0.2152 27 1 8.5009 -0.0824 1.5562 28 1 8.8373 -1.9642 0.0638 29 1 8.6941 0.2839 -0.8331 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2172 2.3163 0.0005 34 1 0.2905 4.9376 -0.6415 35 1 3.9245 7.6123 4.2446 36 1 3.4555 5.9071 4.4468 37 1 4.7568 6.3439 3.3135 38 1 -0.1347 9.6433 1.9792 39 1 1.4909 10.3034 1.6792 40 1 0.4944 9.7383 0.3168 41 1 3.8427 4.6327 -0.0006 42 1 5.1562 2.5747 0.0000 43 1 6.3928 -2.7896 -0.2602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059139306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = -26.423856 kcal Electronic energy + Delta-G solvation = -31917.840687 eV Core-core repulsion = 27444.307770 eV Total energy + Delta-G solvation = -4473.532917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.28163 -40.02794 -39.68908 -38.08973 -37.95366 -36.50997 -35.65645 -33.51150 -32.72586 -30.17892 -29.76260 -28.44116 -27.46924 -27.13540 -26.42013 -25.70078 -23.39261 -23.04511 -21.89958 -20.83157 -19.65347 -18.51275 -18.44814 -17.95350 -17.39729 -17.21823 -16.31703 -16.04310 -15.88927 -15.66164 -15.51435 -15.36905 -14.94305 -14.80146 -14.40440 -14.23360 -13.95541 -13.87571 -13.70621 -13.35825 -13.16696 -12.82713 -12.74498 -12.64336 -12.21207 -12.13893 -12.08146 -11.85020 -11.74814 -11.43041 -11.23753 -11.02865 -10.95646 -10.72738 -10.56091 -10.20728 -9.95512 -9.91990 -9.59510 -9.15966 -8.48375 -8.18102 -7.75956 -7.12808 -6.96934 -4.36069 -0.34646 0.67130 1.29768 1.84296 1.90644 2.00572 2.19002 2.34460 2.89003 2.91573 2.94153 3.16490 3.59582 3.66401 3.79093 4.17396 4.26780 4.65872 4.68795 4.88486 4.90176 4.98821 5.07628 5.11940 5.22067 5.28231 5.35957 5.36633 5.41594 5.48002 5.55801 5.62198 5.68135 5.69627 5.73705 5.95502 6.04627 6.13144 6.27157 6.56960 6.66820 6.71464 6.81514 7.02789 7.17024 7.27198 7.45791 7.47248 7.90631 8.44558 9.12609 10.16565 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.002666 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.633815 B =10498.244150 C =12324.960348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.116 4.116 5 C -0.213 4.213 6 C 0.173 3.827 7 C -0.354 4.354 8 C 0.547 3.453 9 O -0.444 6.444 10 N -0.514 5.514 11 C 0.048 3.952 12 C 0.545 3.455 13 S -0.564 6.564 14 N -0.517 5.517 15 C 0.061 3.939 16 C 0.562 3.438 17 O -0.488 6.488 18 C 0.018 3.982 19 C -0.230 4.230 20 C 0.159 3.841 21 O -0.125 6.125 22 C -0.376 4.376 23 H 0.105 0.895 24 C 0.042 3.958 25 N -0.824 5.824 26 Si 0.950 3.050 27 H -0.263 1.263 28 H -0.272 1.272 29 H -0.263 1.263 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 12.621 1.527 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.218 6.218 3 C 0.000 4.000 4 C -0.136 4.136 5 C -0.214 4.214 6 C 0.152 3.848 7 C -0.362 4.362 8 C 0.338 3.662 9 O -0.315 6.315 10 N -0.235 5.235 11 C -0.093 4.093 12 C 0.195 3.805 13 S -0.429 6.429 14 N -0.238 5.238 15 C -0.080 4.080 16 C 0.355 3.645 17 O -0.363 6.363 18 C -0.001 4.001 19 C -0.249 4.249 20 C 0.099 3.901 21 O -0.022 6.022 22 C -0.450 4.450 23 H 0.122 0.878 24 C -0.169 4.169 25 N -0.452 5.452 26 Si 0.773 3.227 27 H -0.187 1.187 28 H -0.197 1.197 29 H -0.188 1.188 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.155 0.845 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.051 12.031 1.665 14.044 hybrid contribution 0.309 -0.374 -0.372 0.611 sum -6.742 11.657 1.293 13.528 Atomic orbital electron populations 1.22924 0.80023 1.03207 1.00406 1.86226 1.19691 1.26016 1.89857 1.17869 0.89154 0.84616 1.08357 1.20727 0.98397 0.90386 1.04092 1.17927 0.92953 0.90778 1.19750 1.23074 0.90386 0.88237 0.83131 1.21402 1.12239 0.95462 1.07106 1.18774 0.82128 0.83420 0.81895 1.91023 1.49203 1.23234 1.68017 1.45861 1.37788 1.07289 1.32548 1.22764 0.90306 1.07550 0.88708 1.22261 0.81502 0.90474 0.86240 1.93286 1.73387 1.30710 1.45562 1.45641 1.35685 1.14719 1.27755 1.22498 1.00984 0.79960 1.04511 1.18779 0.81071 0.84375 0.80266 1.90836 1.30888 1.82472 1.32079 1.20438 0.91704 0.97117 0.90804 1.20464 1.00722 0.90611 1.13145 1.18983 0.88230 0.87208 0.95675 1.83926 1.20102 1.26848 1.71328 1.21786 0.78294 0.96934 1.47985 0.87792 1.25610 1.01651 0.94029 0.95566 1.70002 1.37577 0.99066 1.38604 0.85609 0.78512 0.78688 0.79901 1.18747 1.19698 1.18804 0.88873 0.93364 0.93463 0.85719 0.83832 0.84877 0.89586 0.89459 0.89817 0.86390 0.88710 0.87636 0.84489 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -6.00 10.28 -34.13 -0.35 -6.35 16 3 C 0.04 0.90 6.70 -39.11 -0.26 0.63 16 4 C -0.12 -1.91 8.79 -38.89 -0.34 -2.25 16 5 C -0.21 -3.41 4.76 -105.09 -0.50 -3.91 16 6 C 0.17 2.30 9.44 -36.38 -0.34 1.96 16 7 C -0.35 -4.86 5.86 -102.23 -0.60 -5.46 16 8 C 0.55 7.95 6.94 -12.37 -0.09 7.86 16 9 O -0.44 -7.55 12.40 5.23 0.06 -7.48 16 10 N -0.51 -6.64 2.94 -126.13 -0.37 -7.01 16 11 C 0.05 0.52 9.85 59.85 0.59 1.11 16 12 C 0.54 6.95 7.51 -88.27 -0.66 6.28 16 13 S -0.56 -7.65 25.60 -107.50 -2.75 -10.40 16 14 N -0.52 -6.21 2.94 -126.13 -0.37 -6.58 16 15 C 0.06 0.57 9.78 59.85 0.59 1.15 16 16 C 0.56 7.41 7.64 -12.37 -0.09 7.32 16 17 O -0.49 -6.99 16.17 5.24 0.08 -6.90 16 18 C 0.02 0.32 6.60 -39.41 -0.26 0.06 16 19 C -0.23 -4.58 9.05 -39.86 -0.36 -4.94 16 20 C 0.16 3.57 6.68 -38.65 -0.26 3.31 16 21 O -0.12 -3.26 9.52 -13.38 -0.13 -3.39 16 22 C -0.38 -9.38 9.43 30.94 0.29 -9.09 16 23 H 0.10 2.35 5.28 -52.49 -0.28 2.08 16 24 C 0.04 1.02 5.50 -17.50 -0.10 0.92 16 25 N -0.82 -21.66 13.67 55.49 0.76 -20.90 16 26 Si 0.95 18.08 29.55 -169.99 -5.02 13.05 16 27 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 28 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 29 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.55 7.66 -51.92 -0.40 0.15 16 32 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 33 H 0.13 1.64 6.29 -52.49 -0.33 1.31 16 34 H 0.14 1.57 7.82 -52.49 -0.41 1.16 16 35 H 0.13 1.43 5.51 -38.54 -0.21 1.22 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 1.08 6.34 -51.60 -0.33 0.75 16 40 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 41 H 0.11 1.69 7.03 -52.49 -0.37 1.32 16 42 H 0.14 2.67 5.69 -52.49 -0.30 2.37 16 43 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -30.32 376.31 -8.06 -38.38 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.23 Total: 5.57 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.41 Total: 6.36 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.02 Total: -34.49 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.33 Total: -24.13 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -2.75 Total: -10.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.32 -8.06 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059139306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.951 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds