Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47089 * 2 1 4 4 C 1.34941 * 117.00004 * 175.07417 * 3 2 1 5 5 O 1.21686 * 120.00312 * 5.00467 * 4 3 2 6 6 C 1.41459 * 120.00238 * 185.00657 * 4 3 2 7 7 C 1.35049 * 121.13296 * 182.95205 * 6 4 3 8 8 C 1.50697 * 119.46570 * 359.97438 * 7 6 4 9 9 N 1.36561 * 121.06929 * 179.70290 * 7 6 4 10 10 C 1.33899 * 123.67693 * 0.58047 * 9 7 6 11 11 O 1.21559 * 118.92194 * 179.69346 * 10 9 7 12 12 N 1.34770 * 122.15359 * 359.41511 * 10 9 7 13 13 C 1.47258 * 118.41665 * 0.27432 * 12 10 9 14 14 H 1.08995 * 107.95816 * 238.11496 * 13 12 10 15 15 C 1.50705 * 107.95290 * 121.84892 * 13 12 10 16 16 C 1.38318 * 119.90955 * 133.43438 * 15 13 12 17 17 C 1.38156 * 120.17074 * 179.97438 * 16 15 13 18 18 C 1.38753 * 119.98590 * 359.97438 * 17 16 15 19 19 O 1.35803 * 120.09229 * 179.97438 * 18 17 16 20 20 C 1.34806 * 116.99831 * 5.85278 * 19 18 17 21 21 H 1.08000 * 120.00281 * 5.22711 * 20 19 18 22 22 C 1.38640 * 120.00175 * 185.22856 * 20 19 18 23 23 N 1.31570 * 120.00342 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99867 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47297 * 89.99600 * 24 22 20 26 26 H 1.48504 * 109.47068 * 210.00064 * 24 22 20 27 27 H 1.48496 * 109.46940 * 329.99904 * 24 22 20 28 28 C 1.39334 * 119.81988 * 0.02562 * 18 17 16 29 29 O 1.35945 * 120.08742 * 179.97438 * 28 18 17 30 30 C 1.42908 * 117.00041 * 184.85229 * 29 28 18 31 31 C 1.38244 * 119.90627 * 313.16063 * 15 13 12 32 32 H 1.08999 * 109.46821 * 64.97057 * 1 2 3 33 33 H 1.09003 * 109.46826 * 184.97030 * 1 2 3 34 34 H 1.09001 * 109.46863 * 304.97177 * 1 2 3 35 35 H 1.08997 * 109.47521 * 239.99870 * 2 1 3 36 36 H 1.09009 * 109.47305 * 119.99967 * 2 1 3 37 37 H 1.08997 * 109.47393 * 83.74944 * 8 7 6 38 38 H 1.08998 * 109.47423 * 203.75249 * 8 7 6 39 39 H 1.09002 * 109.46951 * 323.75086 * 8 7 6 40 40 H 0.96993 * 118.16081 * 180.27023 * 9 7 6 41 41 H 0.96999 * 120.78770 * 180.25706 * 12 10 9 42 42 H 1.08000 * 119.91718 * 359.94931 * 16 15 13 43 43 H 1.08007 * 120.00803 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00184 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.46666 * 304.70037 * 30 29 28 46 46 H 1.08997 * 109.46944 * 64.69913 * 30 29 28 47 47 H 1.08998 * 109.47076 * 184.70308 * 30 29 28 48 48 H 1.07993 * 119.99142 * 0.02562 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3399 1.5256 0.1032 5 8 4.0846 0.5632 0.0991 6 6 3.8723 2.8313 0.2163 7 6 5.2058 3.0401 0.2615 8 6 6.1434 1.8624 0.1910 9 7 5.7185 4.3016 0.3646 10 6 4.9646 5.4057 0.4391 11 8 5.5127 6.4864 0.5346 12 7 3.6182 5.3583 0.4061 13 6 2.9658 4.0432 0.2901 14 1 2.3452 4.0538 -0.6058 15 6 2.0556 3.8698 1.4786 16 6 0.7636 3.4106 1.2967 17 6 -0.0753 3.2491 2.3824 18 6 0.3780 3.5474 3.6594 19 8 -0.4449 3.3900 4.7282 20 6 -1.6475 2.8265 4.4968 21 1 -1.8858 2.4465 3.5144 22 6 -2.5785 2.7348 5.5200 23 7 -3.7524 2.1853 5.2941 24 14 -2.1667 3.3927 7.2192 25 1 -2.5749 4.8175 7.3107 26 1 -2.8933 2.6026 8.2454 27 1 -0.7044 3.2809 7.4522 28 6 1.6796 4.0100 3.8422 29 8 2.1292 4.3044 5.0909 30 6 3.4360 4.8739 5.1924 31 6 2.5160 4.1647 2.7483 32 1 -0.3633 0.4348 -0.9312 33 1 -0.3633 -1.0238 0.0890 34 1 -0.3633 0.5890 0.8421 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 6.3041 1.5878 -0.8515 38 1 7.0965 2.1288 0.6476 39 1 5.7076 1.0185 0.7259 40 1 6.6828 4.4031 0.3897 41 1 3.0914 6.1711 0.4577 42 1 0.4095 3.1780 0.3032 43 1 -1.0838 2.8907 2.2373 44 1 -4.4039 2.1215 6.0100 45 1 4.1561 4.2210 4.6991 46 1 3.4441 5.8524 4.7123 47 1 3.7043 4.9824 6.2432 48 1 3.5266 4.5192 2.8872 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059226982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -115.073243 kcal Electronic energy + Delta-G solvation = -36384.260438 eV Core-core repulsion = 31599.963619 eV Total energy + Delta-G solvation = -4784.296819 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.75274 -40.31953 -39.74589 -37.71336 -37.67373 -37.06324 -36.20735 -34.70036 -32.51078 -32.33673 -31.43988 -30.05683 -29.60112 -28.74206 -26.98831 -25.68075 -24.49308 -23.97066 -22.94879 -21.95693 -21.75205 -20.85509 -19.62883 -18.28774 -17.91807 -17.86734 -17.11984 -16.96725 -16.78414 -16.43349 -16.01433 -15.88813 -15.50425 -15.29235 -15.23867 -14.48177 -14.31836 -13.97336 -13.87423 -13.84899 -13.64864 -13.47658 -13.43270 -13.38777 -13.09295 -12.52298 -12.37785 -12.27983 -12.08365 -11.80245 -11.75874 -11.64623 -11.49574 -11.38775 -11.11523 -10.91573 -10.83189 -10.60431 -10.42416 -10.26785 -10.21852 -10.08095 -9.59678 -9.50301 -8.87408 -8.42205 -7.99125 -7.12097 -6.44288 -4.07590 0.71042 1.94478 2.07450 2.30933 2.67099 2.95146 3.03504 3.23382 3.27778 3.32962 3.46839 3.85370 4.05892 4.25782 4.40505 4.67496 4.74895 4.76976 5.05126 5.05646 5.06384 5.12587 5.23208 5.25702 5.31720 5.35310 5.37837 5.42146 5.48512 5.59503 5.70263 5.73105 5.75977 5.82634 5.92731 6.02189 6.11796 6.21181 6.26236 6.35862 6.47811 6.65839 6.73075 6.76784 7.01484 7.18263 7.22489 7.44232 7.61383 7.87746 7.90686 8.03431 8.08655 8.91445 9.54771 10.62683 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.003531 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.523675 B = 7926.845614 C = 9710.182147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.334 6.334 4 C 0.541 3.459 5 O -0.526 6.526 6 C -0.265 4.265 7 C 0.239 3.761 8 C -0.145 4.145 9 N -0.649 5.649 10 C 0.703 3.297 11 O -0.574 6.574 12 N -0.705 5.705 13 C 0.246 3.754 14 H 0.087 0.913 15 C -0.170 4.170 16 C -0.059 4.059 17 C -0.201 4.201 18 C 0.147 3.853 19 O -0.203 6.203 20 C -0.386 4.386 21 H 0.107 0.893 22 C 0.066 3.934 23 N -0.877 5.877 24 Si 0.901 3.099 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.255 1.255 28 C 0.051 3.949 29 O -0.308 6.308 30 C 0.033 3.967 31 C -0.143 4.143 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.426 0.574 41 H 0.432 0.568 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.280 0.720 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.091 0.909 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.282 -0.639 -12.272 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.250 6.250 4 C 0.391 3.609 5 O -0.419 6.419 6 C -0.273 4.273 7 C 0.134 3.866 8 C -0.201 4.201 9 N -0.292 5.292 10 C 0.403 3.597 11 O -0.451 6.451 12 N -0.364 5.364 13 C 0.142 3.858 14 H 0.105 0.895 15 C -0.172 4.172 16 C -0.078 4.078 17 C -0.221 4.221 18 C 0.094 3.906 19 O -0.108 6.108 20 C -0.462 4.462 21 H 0.124 0.876 22 C -0.138 4.138 23 N -0.514 5.514 24 Si 0.727 3.273 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.179 1.179 28 C 0.006 3.994 29 O -0.223 6.223 30 C -0.063 4.063 31 C -0.162 4.162 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.265 0.735 41 H 0.274 0.726 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.342 -0.407 -11.723 20.116 hybrid contribution 0.306 0.452 0.656 0.853 sum 16.648 0.044 -11.067 19.990 Atomic orbital electron populations 1.21847 0.92372 1.03129 1.03901 1.22593 0.95653 0.80666 1.01877 1.86289 1.23478 1.31798 1.83430 1.18409 0.81054 0.88365 0.73088 1.90749 1.58990 1.43074 1.49135 1.18795 0.91901 0.93355 1.23295 1.20163 0.93725 0.86009 0.86674 1.21727 0.97170 0.95964 1.05224 1.42312 1.11632 1.03809 1.71405 1.15781 0.82855 0.83395 0.77636 1.91042 1.71443 1.26073 1.56571 1.45464 1.03905 1.10222 1.76837 1.18327 0.90450 0.79598 0.97465 0.89526 1.19226 0.95287 1.09860 0.92848 1.20506 0.91998 0.97143 0.98131 1.21005 1.01684 1.08690 0.90715 1.18458 0.87912 0.96434 0.87806 1.83676 1.26547 1.70560 1.29978 1.20775 0.88238 1.36520 1.00631 0.87563 1.24434 0.93808 0.96051 0.99505 1.69649 1.05146 1.42276 1.34353 0.86224 0.80144 0.79000 0.81976 1.19911 1.20845 1.17893 1.18132 0.91720 1.05429 0.84113 1.86180 1.32466 1.78207 1.25403 1.22873 0.83670 0.97084 1.02667 1.20356 0.98284 1.05904 0.91677 0.91802 0.90553 0.90406 0.92009 0.91628 0.88774 0.91309 0.85128 0.73498 0.72578 0.86409 0.84231 0.91029 0.93751 0.93509 0.89078 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.28 37.16 0.38 -1.31 16 2 C 0.07 0.78 6.12 37.16 0.23 1.00 16 3 O -0.33 -4.36 6.94 -41.15 -0.29 -4.65 16 4 C 0.54 7.07 7.41 31.96 0.24 7.31 16 5 O -0.53 -7.16 12.72 -19.41 -0.25 -7.41 16 6 C -0.26 -3.13 5.28 -104.12 -0.55 -3.68 16 7 C 0.24 2.32 6.84 -81.62 -0.56 1.77 16 8 C -0.14 -1.10 8.86 36.00 0.32 -0.78 16 9 N -0.65 -6.01 5.14 -12.86 -0.07 -6.07 16 10 C 0.70 8.48 8.63 -87.71 -0.76 7.72 16 11 O -0.57 -8.61 17.94 5.31 0.10 -8.52 16 12 N -0.71 -8.08 4.77 -60.29 -0.29 -8.37 16 13 C 0.25 2.97 3.12 -69.41 -0.22 2.75 16 14 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 15 C -0.17 -2.55 4.27 -104.59 -0.45 -3.00 16 16 C -0.06 -0.95 7.83 -39.58 -0.31 -1.26 16 17 C -0.20 -3.99 9.13 -39.42 -0.36 -4.35 16 18 C 0.15 3.33 6.66 -38.98 -0.26 3.07 16 19 O -0.20 -5.36 8.37 -14.48 -0.12 -5.48 16 20 C -0.39 -10.60 9.90 30.88 0.31 -10.30 16 21 H 0.11 2.91 5.53 -52.49 -0.29 2.62 16 22 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 23 N -0.88 -24.76 13.96 55.48 0.77 -23.98 16 24 Si 0.90 21.84 28.62 -169.99 -4.86 16.98 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.05 1.03 6.70 -39.05 -0.26 0.77 16 29 O -0.31 -6.25 10.28 -34.00 -0.35 -6.60 16 30 C 0.03 0.47 9.88 101.05 1.00 1.47 16 31 C -0.14 -2.39 8.32 -39.46 -0.33 -2.72 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.82 8.08 -51.92 -0.42 0.40 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.35 8.05 -51.93 -0.42 -0.06 16 39 H 0.13 1.29 5.43 -51.97 -0.28 1.01 16 40 H 0.43 2.87 8.58 -40.82 -0.35 2.52 16 41 H 0.43 4.61 8.93 -40.82 -0.36 4.24 16 42 H 0.12 1.64 7.47 -52.49 -0.39 1.24 16 43 H 0.14 2.88 5.71 -52.48 -0.30 2.58 16 44 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.04 0.58 7.14 -51.93 -0.37 0.21 16 46 H 0.05 0.63 8.10 -51.93 -0.42 0.20 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.11 1.71 6.09 -52.49 -0.32 1.39 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -33.03 398.92 -7.02 -40.05 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.01 Total: 7.84 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.67 Total: 0.20 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.42 Total: -38.43 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.91 Total: -32.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.03 -7.02 -40.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059226982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.023 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds