Wall clock time and date at job start Tue Mar 31 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47089 * 2 1 4 4 C 1.34941 * 117.00004 * 175.07417 * 3 2 1 5 5 O 1.21686 * 120.00312 * 5.00467 * 4 3 2 6 6 C 1.41459 * 120.00238 * 185.00657 * 4 3 2 7 7 C 1.35049 * 121.13296 * 182.95205 * 6 4 3 8 8 C 1.50697 * 119.46570 * 359.97438 * 7 6 4 9 9 N 1.36561 * 121.06929 * 179.70290 * 7 6 4 10 10 C 1.33899 * 123.67693 * 0.58047 * 9 7 6 11 11 O 1.21559 * 118.92194 * 179.69346 * 10 9 7 12 12 N 1.34770 * 122.15359 * 359.41511 * 10 9 7 13 13 C 1.47258 * 118.41665 * 0.27432 * 12 10 9 14 14 H 1.08995 * 107.95816 * 238.11496 * 13 12 10 15 15 C 1.50705 * 107.95290 * 121.84892 * 13 12 10 16 16 C 1.38318 * 119.90955 * 133.43438 * 15 13 12 17 17 C 1.38156 * 120.17074 * 179.97438 * 16 15 13 18 18 C 1.38753 * 119.98590 * 359.97438 * 17 16 15 19 19 O 1.35803 * 120.09229 * 179.97438 * 18 17 16 20 20 C 1.34806 * 116.99831 * 5.85278 * 19 18 17 21 21 H 1.08000 * 120.00281 * 5.22711 * 20 19 18 22 22 C 1.38640 * 120.00175 * 185.22856 * 20 19 18 23 23 N 1.31570 * 120.00342 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99867 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47297 * 89.99600 * 24 22 20 26 26 H 1.48504 * 109.47068 * 210.00064 * 24 22 20 27 27 H 1.48496 * 109.46940 * 329.99904 * 24 22 20 28 28 C 1.39334 * 119.81988 * 0.02562 * 18 17 16 29 29 O 1.35945 * 120.08742 * 179.97438 * 28 18 17 30 30 C 1.42908 * 117.00041 * 184.85229 * 29 28 18 31 31 C 1.38244 * 119.90627 * 313.16063 * 15 13 12 32 32 H 1.08999 * 109.46821 * 64.97057 * 1 2 3 33 33 H 1.09003 * 109.46826 * 184.97030 * 1 2 3 34 34 H 1.09001 * 109.46863 * 304.97177 * 1 2 3 35 35 H 1.08997 * 109.47521 * 239.99870 * 2 1 3 36 36 H 1.09009 * 109.47305 * 119.99967 * 2 1 3 37 37 H 1.08997 * 109.47393 * 83.74944 * 8 7 6 38 38 H 1.08998 * 109.47423 * 203.75249 * 8 7 6 39 39 H 1.09002 * 109.46951 * 323.75086 * 8 7 6 40 40 H 0.96993 * 118.16081 * 180.27023 * 9 7 6 41 41 H 0.96999 * 120.78770 * 180.25706 * 12 10 9 42 42 H 1.08000 * 119.91718 * 359.94931 * 16 15 13 43 43 H 1.08007 * 120.00803 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00184 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.46666 * 304.70037 * 30 29 28 46 46 H 1.08997 * 109.46944 * 64.69913 * 30 29 28 47 47 H 1.08998 * 109.47076 * 184.70308 * 30 29 28 48 48 H 1.07993 * 119.99142 * 0.02562 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3399 1.5256 0.1032 5 8 4.0846 0.5632 0.0991 6 6 3.8723 2.8313 0.2163 7 6 5.2058 3.0401 0.2615 8 6 6.1434 1.8624 0.1910 9 7 5.7185 4.3016 0.3646 10 6 4.9646 5.4057 0.4391 11 8 5.5127 6.4864 0.5346 12 7 3.6182 5.3583 0.4061 13 6 2.9658 4.0432 0.2901 14 1 2.3452 4.0538 -0.6058 15 6 2.0556 3.8698 1.4786 16 6 0.7636 3.4106 1.2967 17 6 -0.0753 3.2491 2.3824 18 6 0.3780 3.5474 3.6594 19 8 -0.4449 3.3900 4.7282 20 6 -1.6475 2.8265 4.4968 21 1 -1.8858 2.4465 3.5144 22 6 -2.5785 2.7348 5.5200 23 7 -3.7524 2.1853 5.2941 24 14 -2.1667 3.3927 7.2192 25 1 -2.5749 4.8175 7.3107 26 1 -2.8933 2.6026 8.2454 27 1 -0.7044 3.2809 7.4522 28 6 1.6796 4.0100 3.8422 29 8 2.1292 4.3044 5.0909 30 6 3.4360 4.8739 5.1924 31 6 2.5160 4.1647 2.7483 32 1 -0.3633 0.4348 -0.9312 33 1 -0.3633 -1.0238 0.0890 34 1 -0.3633 0.5890 0.8421 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 6.3041 1.5878 -0.8515 38 1 7.0965 2.1288 0.6476 39 1 5.7076 1.0185 0.7259 40 1 6.6828 4.4031 0.3897 41 1 3.0914 6.1711 0.4577 42 1 0.4095 3.1780 0.3032 43 1 -1.0838 2.8907 2.2373 44 1 -4.4039 2.1215 6.0100 45 1 4.1561 4.2210 4.6991 46 1 3.4441 5.8524 4.7123 47 1 3.7043 4.9824 6.2432 48 1 3.5266 4.5192 2.8872 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059226982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:17 Heat of formation + Delta-G solvation = -137.139369 kcal Electronic energy + Delta-G solvation = -36385.217297 eV Core-core repulsion = 31599.963619 eV Total energy + Delta-G solvation = -4785.253678 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.72384 -41.30093 -41.26590 -39.35738 -38.70569 -38.31502 -37.24243 -35.88762 -34.39545 -33.39614 -32.33446 -31.26508 -31.09379 -29.77414 -28.19278 -27.41135 -25.74494 -24.97899 -23.85352 -23.28538 -22.89038 -22.32684 -20.55467 -19.84172 -19.54065 -19.07454 -18.19278 -18.07374 -17.96271 -17.51568 -17.23466 -16.91908 -16.72697 -16.64464 -16.32679 -16.18796 -15.52453 -15.35324 -15.27014 -15.15304 -14.98832 -14.67009 -14.34382 -14.28013 -14.22853 -14.19080 -13.64803 -13.45450 -13.30944 -13.14101 -12.84669 -12.75984 -12.72231 -12.54436 -12.42965 -12.35359 -12.19077 -12.05751 -11.82097 -11.64735 -11.37644 -11.27977 -10.99469 -10.89367 -10.61217 -9.51350 -9.32799 -8.72469 -8.47466 -6.15088 -0.17673 0.46190 0.61586 1.30412 1.32994 1.38432 1.53192 1.70283 2.01110 2.08714 2.30206 2.37055 2.49884 2.73927 3.05208 3.06154 3.35746 3.68821 3.88719 4.04697 4.07092 4.14521 4.18708 4.20789 4.27290 4.33788 4.39766 4.45960 4.48090 4.60597 4.62953 4.65568 4.68581 4.76661 4.86878 4.97586 5.03104 5.03906 5.18940 5.23329 5.35529 5.50982 5.61378 5.63099 5.68199 5.77029 5.86201 5.88288 6.07906 6.25471 6.56557 6.88463 6.91131 7.10563 7.66226 8.63693 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.003531 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.523675 B = 7926.845614 C = 9710.182147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.345 6.345 4 C 0.536 3.464 5 O -0.537 6.537 6 C -0.295 4.295 7 C 0.268 3.732 8 C -0.142 4.142 9 N -0.634 5.634 10 C 0.705 3.295 11 O -0.600 6.600 12 N -0.701 5.701 13 C 0.254 3.746 14 H 0.105 0.895 15 C -0.135 4.135 16 C -0.055 4.055 17 C -0.196 4.196 18 C 0.098 3.902 19 O -0.240 6.240 20 C -0.391 4.391 21 H 0.090 0.910 22 C 0.016 3.984 23 N -0.918 5.918 24 Si 0.958 3.042 25 H -0.269 1.269 26 H -0.266 1.266 27 H -0.270 1.270 28 C 0.045 3.955 29 O -0.342 6.342 30 C 0.025 3.975 31 C -0.136 4.136 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.441 0.559 41 H 0.437 0.563 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.283 0.717 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.839 0.077 -14.053 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.261 6.261 4 C 0.387 3.613 5 O -0.431 6.431 6 C -0.303 4.303 7 C 0.162 3.838 8 C -0.198 4.198 9 N -0.277 5.277 10 C 0.405 3.595 11 O -0.479 6.479 12 N -0.359 5.359 13 C 0.149 3.851 14 H 0.123 0.877 15 C -0.138 4.138 16 C -0.073 4.073 17 C -0.216 4.216 18 C 0.049 3.951 19 O -0.148 6.148 20 C -0.467 4.467 21 H 0.107 0.893 22 C -0.182 4.182 23 N -0.560 5.560 24 Si 0.782 3.218 25 H -0.194 1.194 26 H -0.191 1.191 27 H -0.195 1.195 28 C 0.000 4.000 29 O -0.257 6.257 30 C -0.069 4.069 31 C -0.155 4.155 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.283 0.717 41 H 0.279 0.721 42 H 0.163 0.837 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.131 0.869 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.954 0.324 -13.535 24.114 hybrid contribution -0.397 0.288 0.908 1.032 sum 19.557 0.613 -12.626 23.287 Atomic orbital electron populations 1.21829 0.92012 1.03662 1.03312 1.22659 0.95874 0.80317 1.02022 1.86258 1.23854 1.32433 1.83580 1.18603 0.80904 0.88803 0.73016 1.90761 1.59047 1.43445 1.49867 1.18640 0.92663 0.92426 1.26608 1.20407 0.93465 0.86513 0.83450 1.21756 0.97833 0.94104 1.06149 1.42235 1.12344 1.03013 1.70113 1.15845 0.82852 0.83542 0.77256 1.91045 1.71853 1.27311 1.57715 1.45412 1.03997 1.10053 1.76488 1.18307 0.90434 0.80160 0.96201 0.87708 1.19717 0.95009 1.05300 0.93734 1.20721 0.91965 0.96502 0.98161 1.21045 1.01547 1.07864 0.91111 1.19035 0.88890 0.99025 0.88154 1.83620 1.26512 1.73053 1.31629 1.20742 0.89112 1.36741 1.00092 0.89302 1.25077 0.93873 0.96793 1.02485 1.69714 1.06106 1.44720 1.35421 0.85391 0.78813 0.78805 0.78830 1.19413 1.19109 1.19527 1.18366 0.91248 1.05046 0.85309 1.86135 1.35269 1.78706 1.25602 1.23200 0.81501 0.97576 1.04662 1.20587 0.98672 1.05106 0.91139 0.90385 0.89160 0.93277 0.90304 0.92990 0.87250 0.88124 0.86996 0.71696 0.72061 0.83674 0.86011 0.90707 0.92257 0.92328 0.86903 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.07 1.47 6.12 71.98 0.44 1.91 16 3 O -0.35 -8.43 6.94 -58.57 -0.41 -8.84 16 4 C 0.54 12.75 7.41 68.61 0.51 13.26 16 5 O -0.54 -13.47 12.72 19.23 0.24 -13.23 16 6 C -0.29 -5.98 5.28 -19.54 -0.10 -6.08 16 7 C 0.27 4.09 6.84 41.09 0.28 4.37 16 8 C -0.14 -1.56 8.86 71.23 0.63 -0.93 16 9 N -0.63 -8.94 5.14 -313.38 -1.61 -10.54 16 10 C 0.70 14.29 8.63 179.33 1.55 15.84 16 11 O -0.60 -16.02 17.94 -3.90 -0.07 -16.09 16 12 N -0.70 -13.52 4.77 -462.94 -2.21 -15.73 16 13 C 0.25 5.25 3.12 43.62 0.14 5.38 16 14 H 0.11 1.90 7.87 -2.39 -0.02 1.88 16 15 C -0.14 -3.76 4.27 -19.84 -0.08 -3.85 16 16 C -0.05 -1.71 7.83 22.27 0.17 -1.53 16 17 C -0.20 -8.07 9.13 22.37 0.20 -7.86 16 18 C 0.10 4.63 6.66 22.66 0.15 4.79 16 19 O -0.24 -13.41 8.37 -9.28 -0.08 -13.49 16 20 C -0.39 -22.82 9.90 67.92 0.67 -22.15 16 21 H 0.09 5.28 5.53 -2.91 -0.02 5.27 16 22 C 0.02 0.95 5.49 84.83 0.47 1.42 16 23 N -0.92 -54.36 13.96 21.61 0.30 -54.05 16 24 Si 0.96 46.92 28.62 68.60 1.96 48.88 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 28 C 0.05 1.83 6.70 22.61 0.15 1.99 16 29 O -0.34 -13.82 10.28 -79.12 -0.81 -14.64 16 30 C 0.03 0.67 9.88 113.37 1.12 1.79 16 31 C -0.14 -4.28 8.32 22.35 0.19 -4.09 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.29 8.08 -2.38 -0.02 1.27 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.51 8.05 -2.39 -0.02 0.49 16 39 H 0.11 1.86 5.43 -3.12 -0.02 1.84 16 40 H 0.44 3.82 8.58 -92.71 -0.80 3.03 16 41 H 0.44 7.86 8.93 -92.71 -0.83 7.03 16 42 H 0.15 3.75 7.47 -2.91 -0.02 3.73 16 43 H 0.12 5.42 5.71 -2.91 -0.02 5.40 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.06 1.39 7.14 -2.39 -0.02 1.37 16 46 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 47 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.13 3.62 6.09 -2.91 -0.02 3.60 16 Total: -1.00 -76.16 398.92 3.98 -72.18 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.57 Total: 23.78 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 7.22 Total: 1.76 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.51 Total: -80.33 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -1.12 Total: -66.28 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.96 Total: 48.88 kcal Total: -76.16 3.98 -72.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059226982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.954 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds