Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47566 * 2 1 4 4 C 1.34945 * 116.99969 * 174.98790 * 3 2 1 5 5 O 1.21673 * 120.00118 * 5.13317 * 4 3 2 6 6 C 1.41452 * 119.99800 * 185.13013 * 4 3 2 7 7 C 1.35045 * 121.13290 * 182.43073 * 6 4 3 8 8 C 1.50703 * 119.46116 * 359.97438 * 7 6 4 9 9 N 1.36563 * 121.07322 * 179.97438 * 7 6 4 10 10 C 1.33897 * 123.68015 * 0.02562 * 9 7 6 11 11 O 1.21553 * 118.92237 * 179.97438 * 10 9 7 12 12 N 1.34773 * 122.14725 * 0.02562 * 10 9 7 13 13 C 1.47257 * 118.42376 * 359.97438 * 12 10 9 14 14 H 1.08991 * 107.95489 * 121.88185 * 13 12 10 15 15 C 1.50700 * 107.95477 * 238.11692 * 13 12 10 16 16 C 1.38317 * 119.90654 * 228.14568 * 15 13 12 17 17 C 1.38165 * 120.16973 * 179.76684 * 16 15 13 18 18 C 1.38753 * 119.98712 * 0.48290 * 17 16 15 19 19 O 1.35791 * 120.09397 * 179.74783 * 18 17 16 20 20 C 1.34811 * 117.00242 * 5.55252 * 19 18 17 21 21 H 1.07996 * 119.99524 * 5.14546 * 20 19 18 22 22 C 1.38634 * 120.00142 * 185.15258 * 20 19 18 23 23 N 1.31574 * 120.00289 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46603 * 90.00221 * 24 22 20 26 26 H 1.48503 * 109.47169 * 209.99740 * 24 22 20 27 27 H 1.48492 * 109.46979 * 330.00308 * 24 22 20 28 28 C 1.39344 * 119.81412 * 359.77127 * 18 17 16 29 29 O 1.35946 * 120.08347 * 180.02562 * 28 18 17 30 30 C 1.42902 * 117.00120 * 184.98727 * 29 28 18 31 31 C 1.38244 * 119.91013 * 48.41586 * 15 13 12 32 32 H 1.08994 * 109.47200 * 185.00629 * 1 2 3 33 33 H 1.09000 * 109.46508 * 305.01243 * 1 2 3 34 34 H 1.09002 * 109.46574 * 65.00180 * 1 2 3 35 35 H 1.09004 * 109.47282 * 240.00030 * 2 1 3 36 36 H 1.09000 * 109.47167 * 120.00339 * 2 1 3 37 37 H 1.08998 * 109.47019 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47394 * 299.99322 * 8 7 6 39 39 H 1.08994 * 109.47186 * 60.00017 * 8 7 6 40 40 H 0.97001 * 118.15421 * 180.28363 * 9 7 6 41 41 H 0.97007 * 120.78402 * 179.97438 * 12 10 9 42 42 H 1.07998 * 119.91683 * 0.02562 * 16 15 13 43 43 H 1.07997 * 120.00608 * 180.25273 * 17 16 15 44 44 H 0.97000 * 120.00197 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.47106 * 184.28916 * 30 29 28 46 46 H 1.09006 * 109.46770 * 304.28758 * 30 29 28 47 47 H 1.08997 * 109.47292 * 64.28141 * 30 29 28 48 48 H 1.07994 * 119.99150 * 359.97438 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3399 1.5255 0.1050 5 8 4.0846 0.5632 0.1001 6 6 3.8720 2.8310 0.2208 7 6 5.2051 3.0391 0.2784 8 6 6.1425 1.8606 0.2189 9 7 5.7175 4.3001 0.3897 10 6 4.9638 5.4051 0.4499 11 8 5.5117 6.4857 0.5491 12 7 3.6176 5.3584 0.4051 13 6 2.9655 4.0435 0.2855 14 1 2.2992 3.9200 1.1391 15 6 2.1184 4.0568 -0.9608 16 6 0.8101 3.6106 -0.9102 17 6 0.0271 3.6249 -2.0485 18 6 0.5561 4.0783 -3.2484 19 8 -0.2100 4.0885 -4.3696 20 6 -1.5083 3.7546 -4.2269 21 1 -1.9147 3.5759 -3.2424 22 6 -2.3215 3.6404 -5.3438 23 7 -1.8264 3.8585 -6.5432 24 14 -4.1203 3.1769 -5.1460 25 1 -4.9342 4.4089 -4.9866 26 1 -4.5756 2.4352 -6.3493 27 1 -4.2811 2.3185 -3.9451 28 6 1.8757 4.5228 -3.2999 29 8 2.3994 4.9687 -4.4725 30 6 3.7881 5.3053 -4.4765 31 6 2.6527 4.5097 -2.1527 32 1 -0.3633 -1.0237 0.0897 33 1 -0.3632 0.5896 0.8417 34 1 -0.3632 0.4343 -0.9314 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 7.1725 2.2124 0.2773 38 1 5.9388 1.1916 1.0550 39 1 5.9944 1.3255 -0.7190 40 1 6.6816 4.4010 0.4233 41 1 3.0908 6.1717 0.4507 42 1 0.3983 3.2540 0.0223 43 1 -0.9953 3.2797 -2.0051 44 1 -2.3953 3.7782 -7.3247 45 1 4.0593 5.7174 -5.4485 46 1 3.9848 6.0452 -3.7005 47 1 4.3795 4.4103 -4.2834 48 1 3.6757 4.8536 -2.1895 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059226983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -120.903460 kcal Electronic energy + Delta-G solvation = -36303.617253 eV Core-core repulsion = 31519.067617 eV Total energy + Delta-G solvation = -4784.549637 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.69116 -40.26334 -39.57186 -37.63187 -37.49243 -36.93103 -36.14483 -34.60359 -32.47701 -32.21728 -31.44915 -29.92695 -29.47654 -28.59684 -26.86165 -25.57591 -24.54918 -24.01532 -22.92294 -21.91721 -21.61679 -20.85595 -19.56332 -18.20922 -18.02187 -17.64690 -17.07286 -16.87947 -16.67173 -16.32962 -15.88659 -15.82034 -15.41830 -15.14587 -15.08443 -14.56466 -14.34053 -13.89473 -13.87347 -13.71682 -13.45381 -13.41638 -13.35070 -13.31643 -13.22517 -12.58770 -12.32530 -12.22700 -11.81813 -11.67039 -11.63315 -11.57349 -11.43255 -11.36907 -11.08515 -10.95043 -10.78450 -10.53097 -10.39162 -10.37361 -10.25537 -10.24024 -9.54547 -9.45559 -8.82606 -8.37191 -7.86900 -6.94050 -6.44150 -4.00390 0.75678 2.06526 2.18297 2.40088 2.72741 3.02865 3.04208 3.12298 3.12587 3.17688 3.36831 3.95057 4.02653 4.09611 4.50101 4.71659 4.79899 5.02747 5.06250 5.07854 5.11851 5.17718 5.26480 5.33248 5.34885 5.36854 5.45933 5.52924 5.56938 5.68073 5.73801 5.75342 5.84942 5.88327 5.91240 6.02819 6.16303 6.25263 6.36531 6.39739 6.61245 6.63048 6.77592 6.88779 7.09820 7.22810 7.24705 7.34373 7.61312 7.91628 7.95758 8.08578 8.17429 9.00028 9.71525 10.73110 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003390 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.356640 B = 8256.519970 C = 9926.453252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.331 6.331 4 C 0.538 3.462 5 O -0.528 6.528 6 C -0.262 4.262 7 C 0.236 3.764 8 C -0.118 4.118 9 N -0.648 5.648 10 C 0.703 3.297 11 O -0.575 6.575 12 N -0.705 5.705 13 C 0.247 3.753 14 H 0.084 0.916 15 C -0.178 4.178 16 C -0.054 4.054 17 C -0.216 4.216 18 C 0.142 3.858 19 O -0.162 6.162 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.856 5.856 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.267 1.267 28 C 0.050 3.950 29 O -0.303 6.303 30 C 0.034 3.966 31 C -0.142 4.142 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.426 0.574 41 H 0.432 0.568 42 H 0.113 0.887 43 H 0.133 0.867 44 H 0.270 0.730 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.042 0.958 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 -4.971 15.345 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.247 6.247 4 C 0.388 3.612 5 O -0.421 6.421 6 C -0.271 4.271 7 C 0.130 3.870 8 C -0.174 4.174 9 N -0.291 5.291 10 C 0.403 3.597 11 O -0.452 6.452 12 N -0.364 5.364 13 C 0.143 3.857 14 H 0.102 0.898 15 C -0.180 4.180 16 C -0.073 4.073 17 C -0.236 4.236 18 C 0.087 3.913 19 O -0.065 6.065 20 C -0.466 4.466 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.490 5.490 24 Si 0.764 3.236 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.191 1.191 28 C 0.005 3.995 29 O -0.217 6.217 30 C -0.062 4.062 31 C -0.161 4.161 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.265 0.735 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.151 0.849 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.531 -4.624 14.699 19.246 hybrid contribution -0.525 -0.092 0.105 0.543 sum 11.006 -4.716 14.804 19.040 Atomic orbital electron populations 1.21821 0.92598 1.02554 1.04116 1.22571 0.95521 0.81028 1.01825 1.86354 1.23499 1.31311 1.83493 1.18410 0.81130 0.88342 0.73359 1.90854 1.59491 1.42862 1.48920 1.18844 0.92017 0.93274 1.22987 1.20143 0.93714 0.86065 0.87044 1.21289 0.95839 0.93979 1.06336 1.42308 1.11627 1.03776 1.71404 1.15781 0.82873 0.83365 0.77659 1.91038 1.71441 1.26077 1.56626 1.45484 1.03949 1.10415 1.76532 1.18310 0.90770 0.79569 0.97067 0.89802 1.19110 0.95132 1.10228 0.93537 1.20389 0.92225 0.97210 0.97429 1.20852 1.01538 1.09274 0.91887 1.18721 0.88733 0.95439 0.88406 1.84080 1.20989 1.74706 1.26747 1.21344 0.81822 1.48602 0.94843 0.89029 1.25297 1.00194 0.96779 0.94243 1.70072 1.36453 1.44566 0.97897 0.85736 0.80668 0.78841 0.78318 1.19879 1.20294 1.19127 1.18138 0.91840 1.04001 0.85476 1.86235 1.24068 1.80727 1.30673 1.22851 0.81691 0.99192 1.02506 1.20324 0.98645 1.05365 0.91771 0.90750 0.91617 0.90736 0.91695 0.92099 0.91613 0.87807 0.87930 0.73513 0.72602 0.86944 0.84926 0.92014 0.89107 0.93770 0.93923 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.19 16 2 C 0.07 0.75 6.12 37.16 0.23 0.98 16 3 O -0.33 -4.46 6.89 -41.16 -0.28 -4.74 16 4 C 0.54 7.23 7.47 31.96 0.24 7.47 16 5 O -0.53 -7.34 12.86 -19.40 -0.25 -7.59 16 6 C -0.26 -3.21 5.26 -104.13 -0.55 -3.76 16 7 C 0.24 2.37 6.84 -81.62 -0.56 1.81 16 8 C -0.12 -0.92 8.40 36.01 0.30 -0.62 16 9 N -0.65 -6.26 5.14 -12.86 -0.07 -6.32 16 10 C 0.70 8.83 8.63 -87.71 -0.76 8.07 16 11 O -0.57 -8.91 17.94 5.32 0.10 -8.81 16 12 N -0.70 -8.47 4.83 -60.29 -0.29 -8.77 16 13 C 0.25 3.11 3.16 -69.41 -0.22 2.89 16 14 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 15 C -0.18 -2.80 4.18 -104.59 -0.44 -3.23 16 16 C -0.05 -0.89 7.73 -39.58 -0.31 -1.19 16 17 C -0.22 -4.39 9.13 -39.42 -0.36 -4.75 16 18 C 0.14 3.40 6.66 -38.98 -0.26 3.14 16 19 O -0.16 -4.65 9.54 -14.46 -0.14 -4.79 16 20 C -0.39 -10.69 9.45 30.88 0.29 -10.40 16 21 H 0.09 2.28 5.29 -52.49 -0.28 2.00 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 24 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 C 0.05 1.10 6.70 -39.05 -0.26 0.83 16 29 O -0.30 -6.71 10.28 -34.00 -0.35 -7.06 16 30 C 0.03 0.53 9.87 101.05 1.00 1.53 16 31 C -0.14 -2.52 8.31 -39.46 -0.33 -2.85 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.07 0.32 7.85 -51.93 -0.41 -0.08 16 38 H 0.10 0.85 7.18 -51.93 -0.37 0.48 16 39 H 0.10 0.95 7.31 -51.93 -0.38 0.57 16 40 H 0.43 3.01 8.44 -40.82 -0.34 2.66 16 41 H 0.43 4.87 8.93 -40.82 -0.36 4.50 16 42 H 0.11 1.58 7.62 -52.49 -0.40 1.18 16 43 H 0.13 2.68 5.71 -52.49 -0.30 2.38 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.04 0.64 7.17 -51.93 -0.37 0.27 16 47 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 LS Contribution 400.38 15.07 6.03 6.03 Total: -1.00 -34.76 400.38 -7.24 -42.00 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.04 Total: 9.59 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.69 Total: -0.29 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.42 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.93 Total: -32.99 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.76 -7.24 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059226983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.899 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds