Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47566 * 2 1 4 4 C 1.34945 * 116.99969 * 174.98790 * 3 2 1 5 5 O 1.21673 * 120.00118 * 5.13317 * 4 3 2 6 6 C 1.41452 * 119.99800 * 185.13013 * 4 3 2 7 7 C 1.35045 * 121.13290 * 182.43073 * 6 4 3 8 8 C 1.50703 * 119.46116 * 359.97438 * 7 6 4 9 9 N 1.36563 * 121.07322 * 179.97438 * 7 6 4 10 10 C 1.33897 * 123.68015 * 0.02562 * 9 7 6 11 11 O 1.21553 * 118.92237 * 179.97438 * 10 9 7 12 12 N 1.34773 * 122.14725 * 0.02562 * 10 9 7 13 13 C 1.47257 * 118.42376 * 359.97438 * 12 10 9 14 14 H 1.08991 * 107.95489 * 121.88185 * 13 12 10 15 15 C 1.50700 * 107.95477 * 238.11692 * 13 12 10 16 16 C 1.38317 * 119.90654 * 228.14568 * 15 13 12 17 17 C 1.38165 * 120.16973 * 179.76684 * 16 15 13 18 18 C 1.38753 * 119.98712 * 0.48290 * 17 16 15 19 19 O 1.35791 * 120.09397 * 179.74783 * 18 17 16 20 20 C 1.34811 * 117.00242 * 5.55252 * 19 18 17 21 21 H 1.07996 * 119.99524 * 5.14546 * 20 19 18 22 22 C 1.38634 * 120.00142 * 185.15258 * 20 19 18 23 23 N 1.31574 * 120.00289 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46603 * 90.00221 * 24 22 20 26 26 H 1.48503 * 109.47169 * 209.99740 * 24 22 20 27 27 H 1.48492 * 109.46979 * 330.00308 * 24 22 20 28 28 C 1.39344 * 119.81412 * 359.77127 * 18 17 16 29 29 O 1.35946 * 120.08347 * 180.02562 * 28 18 17 30 30 C 1.42902 * 117.00120 * 184.98727 * 29 28 18 31 31 C 1.38244 * 119.91013 * 48.41586 * 15 13 12 32 32 H 1.08994 * 109.47200 * 185.00629 * 1 2 3 33 33 H 1.09000 * 109.46508 * 305.01243 * 1 2 3 34 34 H 1.09002 * 109.46574 * 65.00180 * 1 2 3 35 35 H 1.09004 * 109.47282 * 240.00030 * 2 1 3 36 36 H 1.09000 * 109.47167 * 120.00339 * 2 1 3 37 37 H 1.08998 * 109.47019 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47394 * 299.99322 * 8 7 6 39 39 H 1.08994 * 109.47186 * 60.00017 * 8 7 6 40 40 H 0.97001 * 118.15421 * 180.28363 * 9 7 6 41 41 H 0.97007 * 120.78402 * 179.97438 * 12 10 9 42 42 H 1.07998 * 119.91683 * 0.02562 * 16 15 13 43 43 H 1.07997 * 120.00608 * 180.25273 * 17 16 15 44 44 H 0.97000 * 120.00197 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.47106 * 184.28916 * 30 29 28 46 46 H 1.09006 * 109.46770 * 304.28758 * 30 29 28 47 47 H 1.08997 * 109.47292 * 64.28141 * 30 29 28 48 48 H 1.07994 * 119.99150 * 359.97438 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3399 1.5255 0.1050 5 8 4.0846 0.5632 0.1001 6 6 3.8720 2.8310 0.2208 7 6 5.2051 3.0391 0.2784 8 6 6.1425 1.8606 0.2189 9 7 5.7175 4.3001 0.3897 10 6 4.9638 5.4051 0.4499 11 8 5.5117 6.4857 0.5491 12 7 3.6176 5.3584 0.4051 13 6 2.9655 4.0435 0.2855 14 1 2.2992 3.9200 1.1391 15 6 2.1184 4.0568 -0.9608 16 6 0.8101 3.6106 -0.9102 17 6 0.0271 3.6249 -2.0485 18 6 0.5561 4.0783 -3.2484 19 8 -0.2100 4.0885 -4.3696 20 6 -1.5083 3.7546 -4.2269 21 1 -1.9147 3.5759 -3.2424 22 6 -2.3215 3.6404 -5.3438 23 7 -1.8264 3.8585 -6.5432 24 14 -4.1203 3.1769 -5.1460 25 1 -4.9342 4.4089 -4.9866 26 1 -4.5756 2.4352 -6.3493 27 1 -4.2811 2.3185 -3.9451 28 6 1.8757 4.5228 -3.2999 29 8 2.3994 4.9687 -4.4725 30 6 3.7881 5.3053 -4.4765 31 6 2.6527 4.5097 -2.1527 32 1 -0.3633 -1.0237 0.0897 33 1 -0.3632 0.5896 0.8417 34 1 -0.3632 0.4343 -0.9314 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 7.1725 2.2124 0.2773 38 1 5.9388 1.1916 1.0550 39 1 5.9944 1.3255 -0.7190 40 1 6.6816 4.4010 0.4233 41 1 3.0908 6.1717 0.4507 42 1 0.3983 3.2540 0.0223 43 1 -0.9953 3.2797 -2.0051 44 1 -2.3953 3.7782 -7.3247 45 1 4.0593 5.7174 -5.4485 46 1 3.9848 6.0452 -3.7005 47 1 4.3795 4.4103 -4.2834 48 1 3.6757 4.8536 -2.1895 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059226983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = -145.090097 kcal Electronic energy + Delta-G solvation = -36304.666065 eV Core-core repulsion = 31519.067617 eV Total energy + Delta-G solvation = -4785.598448 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.69731 -41.26207 -41.16222 -39.21858 -38.68414 -38.23718 -37.20963 -35.85088 -34.21467 -33.38104 -32.31154 -31.14249 -31.03662 -29.70466 -28.17729 -27.40274 -25.80623 -25.00581 -23.83760 -23.20678 -22.85383 -22.37172 -20.51853 -19.84097 -19.40394 -19.03180 -18.09362 -18.05747 -17.86860 -17.49141 -17.11772 -16.91071 -16.66786 -16.58007 -16.32633 -16.21707 -15.49620 -15.27045 -15.20370 -15.10964 -15.00507 -14.73432 -14.32010 -14.18985 -14.14772 -13.82341 -13.46848 -13.37068 -13.25488 -13.07110 -12.76330 -12.73552 -12.68370 -12.53028 -12.44319 -12.31400 -12.17630 -12.03761 -11.76464 -11.62034 -11.31004 -11.25653 -11.21213 -10.77865 -10.57777 -9.44857 -9.31572 -8.61734 -8.40572 -6.06301 -0.16494 0.53452 0.69455 1.37722 1.39523 1.47809 1.55504 1.72067 2.04592 2.09278 2.21042 2.37435 2.57834 2.82161 3.15111 3.36899 3.43892 3.72658 3.90819 4.06986 4.12259 4.15497 4.20569 4.23197 4.28178 4.32011 4.43544 4.47395 4.52953 4.60569 4.62078 4.68646 4.70941 4.79631 4.89644 5.02141 5.05617 5.07019 5.16063 5.21147 5.32116 5.40987 5.61062 5.63101 5.68061 5.74608 5.87763 6.00937 6.08912 6.26379 6.62897 6.92753 7.03448 7.11150 7.87586 8.82882 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003390 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.356640 B = 8256.519970 C = 9926.453252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.344 6.344 4 C 0.534 3.466 5 O -0.539 6.539 6 C -0.292 4.292 7 C 0.263 3.737 8 C -0.116 4.116 9 N -0.633 5.633 10 C 0.704 3.296 11 O -0.602 6.602 12 N -0.701 5.701 13 C 0.255 3.745 14 H 0.106 0.894 15 C -0.143 4.143 16 C -0.048 4.048 17 C -0.207 4.207 18 C 0.092 3.908 19 O -0.224 6.224 20 C -0.408 4.408 21 H 0.106 0.894 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.246 1.246 28 C 0.033 3.967 29 O -0.345 6.345 30 C 0.028 3.972 31 C -0.134 4.134 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.441 0.559 41 H 0.436 0.564 42 H 0.148 0.852 43 H 0.129 0.871 44 H 0.270 0.730 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.862 -5.662 19.074 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.260 6.260 4 C 0.384 3.616 5 O -0.433 6.433 6 C -0.301 4.301 7 C 0.157 3.843 8 C -0.172 4.172 9 N -0.277 5.277 10 C 0.404 3.596 11 O -0.481 6.481 12 N -0.360 5.360 13 C 0.150 3.850 14 H 0.124 0.876 15 C -0.146 4.146 16 C -0.067 4.067 17 C -0.226 4.226 18 C 0.041 3.959 19 O -0.131 6.131 20 C -0.484 4.484 21 H 0.123 0.877 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.836 3.164 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.169 1.169 28 C -0.012 4.012 29 O -0.260 6.260 30 C -0.067 4.067 31 C -0.153 4.153 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.283 0.717 41 H 0.279 0.721 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.148 -5.313 18.499 23.309 hybrid contribution -0.596 0.154 -0.747 0.968 sum 12.553 -5.159 17.752 22.345 Atomic orbital electron populations 1.21820 0.91649 1.03954 1.03202 1.22698 0.96241 0.80386 1.01918 1.86315 1.23761 1.32336 1.83610 1.18576 0.81053 0.88703 0.73239 1.90850 1.59563 1.43213 1.49689 1.18710 0.92779 0.92409 1.26207 1.20402 0.93495 0.86550 0.83881 1.21345 0.97322 0.92880 1.05703 1.42236 1.12338 1.03002 1.70106 1.15855 0.82884 0.83531 0.77286 1.91039 1.71868 1.27354 1.57795 1.45436 1.04051 1.10341 1.76160 1.18314 0.90991 0.80066 0.95603 0.87609 1.19647 0.94998 1.05587 0.94334 1.20692 0.92181 0.96404 0.97414 1.21014 1.01776 1.07905 0.91904 1.19368 0.89916 0.97816 0.88769 1.84042 1.21769 1.78154 1.29159 1.21865 0.82336 1.48432 0.95740 0.87679 1.26598 1.05399 0.96655 0.93594 1.70241 1.38555 1.48265 0.99007 0.84612 0.73913 0.78917 0.78932 1.19052 1.20027 1.16929 1.18497 0.91762 1.04303 0.86632 1.86178 1.27210 1.81063 1.31563 1.23144 0.79070 1.00221 1.04276 1.20533 0.99008 1.04708 0.91076 0.88682 0.90466 0.93178 0.93057 0.90534 0.88012 0.87596 0.88935 0.71708 0.72130 0.83441 0.85290 0.92116 0.87258 0.92332 0.92564 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.06 1.33 6.12 71.98 0.44 1.77 16 3 O -0.34 -8.50 6.89 -58.61 -0.40 -8.90 16 4 C 0.53 12.95 7.47 68.61 0.51 13.47 16 5 O -0.54 -13.74 12.86 19.27 0.25 -13.50 16 6 C -0.29 -6.16 5.26 -19.54 -0.10 -6.26 16 7 C 0.26 4.25 6.84 41.09 0.28 4.53 16 8 C -0.12 -1.36 8.40 71.24 0.60 -0.76 16 9 N -0.63 -9.62 5.14 -313.38 -1.61 -11.23 16 10 C 0.70 15.20 8.63 179.33 1.55 16.75 16 11 O -0.60 -16.88 17.94 -3.88 -0.07 -16.94 16 12 N -0.70 -14.43 4.83 -462.95 -2.24 -16.67 16 13 C 0.26 5.49 3.16 43.62 0.14 5.62 16 14 H 0.11 1.93 7.85 -2.39 -0.02 1.91 16 15 C -0.14 -4.17 4.18 -19.84 -0.08 -4.26 16 16 C -0.05 -1.51 7.73 22.27 0.17 -1.34 16 17 C -0.21 -8.50 9.13 22.38 0.20 -8.30 16 18 C 0.09 4.62 6.66 22.66 0.15 4.77 16 19 O -0.22 -13.82 9.54 -9.20 -0.09 -13.91 16 20 C -0.41 -23.67 9.45 67.91 0.64 -23.02 16 21 H 0.11 5.46 5.29 -2.91 -0.02 5.44 16 22 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 23 N -0.92 -57.86 13.67 21.61 0.30 -57.57 16 24 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 28 C 0.03 1.46 6.70 22.61 0.15 1.61 16 29 O -0.34 -15.89 10.28 -79.14 -0.81 -16.70 16 30 C 0.03 0.86 9.87 113.37 1.12 1.98 16 31 C -0.13 -4.59 8.31 22.35 0.19 -4.41 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.10 0.48 7.85 -2.39 -0.02 0.46 16 38 H 0.11 1.33 7.18 -2.39 -0.02 1.32 16 39 H 0.09 1.42 7.31 -2.39 -0.02 1.40 16 40 H 0.44 4.25 8.44 -92.71 -0.78 3.47 16 41 H 0.44 8.45 8.93 -92.70 -0.83 7.62 16 42 H 0.15 3.63 7.62 -2.91 -0.02 3.61 16 43 H 0.13 5.32 5.71 -2.91 -0.02 5.30 16 44 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.06 1.63 7.17 -2.38 -0.02 1.61 16 47 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 48 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 Total: -1.00 -83.06 400.38 3.95 -79.10 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.56 Total: 32.49 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 7.16 Total: -0.89 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.55 Total: -85.47 kcal Atomic # 8 Polarization: -68.83 SS G_CDS: -1.13 Total: -69.96 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -83.06 3.95 -79.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059226983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.986 kcal (2) G-P(sol) polarization free energy of solvation -83.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds