Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48499 * 109.47509 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00337 * 3 2 1 7 7 C 1.37874 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00073 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47309 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00206 * 169.99937 * 10 9 7 12 12 C 1.53052 * 109.36841 * 183.18760 * 11 10 9 13 13 N 1.46959 * 109.36084 * 301.59886 * 12 11 10 14 14 C 1.46899 * 110.99674 * 183.18617 * 13 12 11 15 15 C 1.53008 * 109.46800 * 162.80177 * 14 13 12 16 16 H 1.08994 * 109.47504 * 53.08320 * 15 14 13 17 17 C 1.53004 * 109.46966 * 293.08465 * 15 14 13 18 18 C 1.50697 * 109.47068 * 175.00353 * 17 15 14 19 19 O 1.21286 * 120.00076 * 359.97438 * 18 17 15 20 20 N 1.34778 * 119.99637 * 180.02562 * 18 17 15 21 21 C 1.39925 * 119.99647 * 174.88180 * 20 18 17 22 22 C 1.38873 * 120.06901 * 322.87260 * 21 20 18 23 23 C 1.38119 * 119.92661 * 179.76823 * 22 21 20 24 24 C 1.38281 * 120.07053 * 0.48302 * 23 22 21 25 25 C 1.38283 * 120.14155 * 359.77646 * 24 23 22 26 26 C 1.38112 * 120.06834 * 359.97438 * 25 24 23 27 27 C 1.50701 * 109.46926 * 173.08665 * 15 14 13 28 28 O 1.20829 * 119.99946 * 57.26715 * 27 15 14 29 29 O 1.34228 * 120.00206 * 237.26342 * 27 15 14 30 30 C 1.46953 * 110.88031 * 59.31810 * 13 12 11 31 31 C 1.46959 * 110.99674 * 293.79793 * 10 9 7 32 32 H 0.97000 * 119.99878 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47511 * 59.99787 * 9 7 2 34 34 H 1.09007 * 109.47200 * 299.99816 * 9 7 2 35 35 H 1.09000 * 109.49007 * 63.21979 * 11 10 9 36 36 H 1.09005 * 109.48949 * 303.15427 * 11 10 9 37 37 H 1.08995 * 109.49270 * 181.63380 * 12 11 10 38 38 H 1.08994 * 109.48675 * 61.56044 * 12 11 10 39 39 H 1.09000 * 109.47170 * 282.79313 * 14 13 12 40 40 H 1.08998 * 109.47751 * 42.80235 * 14 13 12 41 41 H 1.09006 * 109.47007 * 295.00422 * 17 15 14 42 42 H 1.08999 * 109.47088 * 54.99930 * 17 15 14 43 43 H 0.96989 * 120.00352 * 354.88039 * 20 18 17 44 44 H 1.08000 * 120.03685 * 359.97438 * 22 21 20 45 45 H 1.07998 * 119.96285 * 180.25855 * 23 22 21 46 46 H 1.08004 * 119.92702 * 179.74379 * 24 23 22 47 47 H 1.07999 * 119.96592 * 179.97438 * 25 24 23 48 48 H 1.07998 * 120.03347 * 179.97438 * 26 25 24 49 49 H 0.96691 * 117.00568 * 180.02562 * 29 27 15 50 50 H 1.09005 * 109.48969 * 60.65014 * 30 13 12 51 51 H 1.09005 * 109.48949 * 180.71075 * 30 13 12 52 52 H 1.08994 * 109.48724 * 296.77511 * 31 10 9 53 53 H 1.08998 * 109.48818 * 56.82456 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5562 -6.0188 0.3093 13 7 3.3192 -6.0593 -0.9460 14 6 4.2737 -7.1759 -0.9460 15 6 4.7311 -7.4558 -2.3791 16 1 5.0999 -6.5342 -2.8293 17 6 3.5515 -7.9862 -3.1965 18 6 3.9690 -8.1458 -4.6356 19 8 5.0987 -7.8626 -4.9743 20 7 3.0867 -8.6021 -5.5465 21 6 3.4395 -8.6492 -6.8998 22 6 4.2235 -7.6435 -7.4498 23 6 4.5740 -7.6954 -8.7848 24 6 4.1369 -8.7421 -9.5758 25 6 3.3516 -9.7422 -9.0323 26 6 3.0020 -9.6988 -7.6969 27 6 5.8335 -8.4832 -2.3628 28 8 5.6443 -9.5643 -1.8575 29 8 7.0255 -8.1974 -2.9099 30 6 4.0039 -4.7810 -1.1843 31 6 2.9685 -3.6562 -1.2559 32 1 -0.4850 0.8401 0.0004 33 1 0.6239 -2.5567 -0.8902 34 1 0.6246 -2.5571 0.8897 35 1 0.8252 -5.0915 -0.5779 36 1 0.9732 -4.8433 1.1789 37 1 2.0483 -6.9718 0.4571 38 1 3.2354 -5.8353 1.1418 39 1 5.1370 -6.9159 -0.3334 40 1 3.7931 -8.0650 -0.5379 41 1 3.2395 -8.9522 -2.7994 42 1 2.7212 -7.2828 -3.1348 43 1 2.2072 -8.8979 -5.2641 44 1 4.5615 -6.8235 -6.8336 45 1 5.1872 -6.9159 -9.2122 46 1 4.4089 -8.7782 -10.6203 47 1 3.0115 -10.5581 -9.6528 48 1 2.3883 -10.4800 -7.2731 49 1 7.7012 -8.8882 -2.8757 50 1 4.6996 -4.5836 -0.3686 51 1 4.5515 -4.8317 -2.1254 52 1 2.2893 -3.8397 -2.0884 53 1 3.4761 -2.7031 -1.4038 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061719863.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = -110.613765 kcal Electronic energy + Delta-G solvation = -34488.891479 eV Core-core repulsion = 29938.339794 eV Total energy + Delta-G solvation = -4550.551685 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.199 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.97092 -41.09018 -40.13322 -39.38477 -37.38207 -36.90063 -35.81901 -34.96461 -33.88079 -31.83893 -31.82346 -30.96803 -29.87288 -28.14577 -26.69600 -24.77712 -24.31742 -23.98638 -23.42321 -23.12058 -21.66504 -20.89526 -20.53857 -19.34188 -18.84383 -18.47095 -18.12453 -17.86284 -17.26300 -17.05760 -16.64627 -16.35120 -16.17559 -16.08590 -15.79335 -15.56820 -15.38643 -15.33220 -15.07435 -14.85927 -14.63349 -14.31245 -14.10932 -14.03952 -13.87971 -13.71975 -13.42297 -13.12938 -12.97204 -12.87264 -12.68775 -12.61606 -12.52974 -12.46431 -12.23683 -12.21773 -12.18009 -12.06893 -11.79684 -11.54183 -11.41197 -11.35358 -11.15654 -10.93411 -10.60214 -9.87021 -9.40591 -9.14450 -8.98250 -8.19735 -6.29612 0.29494 0.46331 1.14849 1.41476 1.44187 1.52026 1.53397 1.99087 2.03301 2.40611 2.88870 2.98689 3.12605 3.33785 3.46011 3.56201 3.93566 3.99191 4.04700 4.06700 4.09009 4.23713 4.29581 4.30275 4.39903 4.43587 4.51330 4.52839 4.56572 4.62147 4.62697 4.66013 4.71756 4.80718 4.84782 4.95625 5.02827 5.07259 5.09205 5.10426 5.25997 5.31953 5.36480 5.39102 5.56111 5.59277 5.62338 5.64914 5.96744 5.99636 6.08165 6.08955 6.35367 6.36864 6.66908 6.86423 6.99935 7.06309 7.40042 8.90980 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.002083 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.197932 B =13438.832492 C =15165.285586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.210 3.790 10 N -0.547 5.547 11 C 0.054 3.946 12 C 0.071 3.929 13 N -0.533 5.533 14 C 0.074 3.926 15 C -0.058 4.058 16 H 0.102 0.898 17 C -0.116 4.116 18 C 0.503 3.497 19 O -0.546 6.546 20 N -0.666 5.666 21 C 0.128 3.872 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.148 4.148 27 C 0.498 3.502 28 O -0.546 6.546 29 O -0.505 6.505 30 C 0.065 3.935 31 C 0.071 3.929 32 H 0.264 0.736 33 H -0.039 1.039 34 H 0.004 0.996 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.427 0.573 44 H 0.110 0.890 45 H 0.134 0.866 46 H 0.145 0.855 47 H 0.153 0.847 48 H 0.147 0.853 49 H 0.421 0.579 50 H 0.038 0.962 51 H 0.090 0.910 52 H 0.020 0.980 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -24.105 -14.095 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.272 5.272 11 C -0.074 4.074 12 C -0.056 4.056 13 N -0.258 5.258 14 C -0.054 4.054 15 C -0.078 4.078 16 H 0.121 0.879 17 C -0.156 4.156 18 C 0.292 3.708 19 O -0.423 6.423 20 N -0.313 5.313 21 C 0.035 3.965 22 C -0.163 4.163 23 C -0.133 4.133 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.168 4.168 27 C 0.342 3.658 28 O -0.437 6.437 29 O -0.317 6.317 30 C -0.063 4.063 31 C -0.058 4.058 32 H 0.073 0.927 33 H -0.021 1.021 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.152 0.848 46 H 0.163 0.837 47 H 0.171 0.829 48 H 0.165 0.835 49 H 0.281 0.719 50 H 0.057 0.943 51 H 0.108 0.892 52 H 0.038 0.962 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.160 -23.747 -14.131 28.813 hybrid contribution 0.152 0.798 0.277 0.859 sum 8.313 -22.948 -13.854 28.065 Atomic orbital electron populations 1.70073 1.07664 1.27915 1.51757 1.25894 0.95741 1.03123 0.94887 0.85470 0.78183 0.78092 0.79077 1.19277 1.20887 1.19404 1.21426 0.93537 0.91149 1.50018 0.92030 1.19324 0.90049 0.88911 0.93369 1.62202 1.27358 1.03231 1.34420 1.22173 0.95751 0.89253 1.00272 1.22128 0.95223 0.98661 0.89634 1.62040 1.25718 1.02768 1.35261 1.21902 0.95492 0.95434 0.92574 1.20656 0.91004 0.97600 0.98541 0.87939 1.21654 0.99260 1.06299 0.88354 1.21358 0.84792 0.75647 0.88976 1.90784 1.20580 1.49279 1.81686 1.43472 1.18665 1.64593 1.04577 1.17960 0.99496 0.95174 0.83913 1.21154 1.00717 0.98348 0.96051 1.21289 0.99578 0.99412 0.92991 1.21484 0.98667 0.94574 1.01048 1.21358 0.97106 0.99229 0.94569 1.21243 1.03518 0.97081 0.94933 1.23344 0.83081 0.87242 0.72162 1.90685 1.82406 1.26241 1.44396 1.84591 1.23780 1.50043 1.73263 1.22183 0.94830 0.87994 1.01313 1.21935 0.95669 0.98205 0.89977 0.92708 1.02099 0.97803 0.95414 0.91131 0.87423 0.94297 0.93610 0.87814 0.85866 0.84226 0.73442 0.87213 0.84817 0.83673 0.82935 0.83499 0.71887 0.94348 0.89156 0.96170 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.52 -29.54 8.47 25.60 0.22 -29.32 16 8 H 0.06 3.41 7.13 -2.91 -0.02 3.39 16 9 C 0.21 11.12 4.72 85.56 0.40 11.53 16 10 N -0.55 -23.07 4.70 -900.28 -4.23 -27.30 16 11 C 0.05 1.81 5.61 86.31 0.48 2.29 16 12 C 0.07 1.74 5.58 86.31 0.48 2.23 16 13 N -0.53 -12.32 4.11 -895.71 -3.69 -16.01 16 14 C 0.07 1.40 4.22 86.31 0.36 1.76 16 15 C -0.06 -1.12 1.95 -11.54 -0.02 -1.14 16 16 H 0.10 2.24 6.36 -2.39 -0.02 2.23 16 17 C -0.12 -1.86 5.10 29.85 0.15 -1.71 16 18 C 0.50 10.22 7.29 87.66 0.64 10.86 16 19 O -0.55 -14.92 12.53 4.50 0.06 -14.86 16 20 N -0.67 -10.81 5.33 -303.51 -1.62 -12.42 16 21 C 0.13 2.46 6.20 38.15 0.24 2.70 16 22 C -0.14 -3.18 8.65 22.39 0.19 -2.99 16 23 C -0.11 -2.08 10.04 22.25 0.22 -1.86 16 24 C -0.14 -1.97 10.04 22.29 0.22 -1.75 16 25 C -0.10 -1.33 10.04 22.25 0.22 -1.10 16 26 C -0.15 -2.14 9.97 22.39 0.22 -1.91 16 27 C 0.50 10.98 5.86 71.24 0.42 11.40 16 28 O -0.55 -13.91 17.51 21.95 0.38 -13.52 16 29 O -0.51 -10.34 12.91 -47.76 -0.62 -10.95 16 30 C 0.06 1.81 5.44 86.31 0.47 2.28 16 31 C 0.07 2.65 5.43 86.31 0.47 3.12 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 34 H 0.00 0.22 8.03 -2.38 -0.02 0.20 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 37 H 0.11 1.97 8.01 -2.39 -0.02 1.95 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 0.90 8.03 -2.39 -0.02 0.88 16 40 H 0.10 1.70 7.88 -2.39 -0.02 1.68 16 41 H 0.12 1.55 8.02 -2.38 -0.02 1.53 16 42 H 0.14 2.05 7.69 -2.39 -0.02 2.03 16 43 H 0.43 3.97 8.83 -92.72 -0.82 3.16 16 44 H 0.11 2.87 6.70 -2.91 -0.02 2.85 16 45 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 48 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.42 5.06 9.10 -74.06 -0.67 4.38 16 50 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.09 2.23 6.56 -2.38 -0.02 2.22 16 52 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.06 2.67 6.79 -2.39 -0.02 2.65 16 Total: -1.00 -77.01 429.73 -2.09 -79.10 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.55 Total: 18.58 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.86 Total: 6.95 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -9.25 Total: -111.57 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.18 Total: -39.34 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -77.01 -2.09 -79.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061719863.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.510 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds