Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48493 * 109.46930 * 240.00206 * 3 2 1 5 5 H 1.48503 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47335 * 119.99660 * 3 2 1 7 7 C 1.37876 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99889 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.46954 * 110.99901 * 169.99600 * 10 9 7 12 12 C 1.53050 * 109.36308 * 183.18748 * 11 10 9 13 13 N 1.46953 * 109.36553 * 301.59749 * 12 11 10 14 14 C 1.46898 * 111.00404 * 183.18858 * 13 12 11 15 15 C 1.52997 * 109.47838 * 170.00281 * 14 13 12 16 16 H 1.09007 * 109.46810 * 54.99838 * 15 14 13 17 17 C 1.52992 * 109.47730 * 174.99814 * 15 14 13 18 18 C 1.50698 * 109.47414 * 184.99970 * 17 15 14 19 19 O 1.21291 * 119.99984 * 0.02562 * 18 17 15 20 20 N 1.34776 * 120.00043 * 180.02562 * 18 17 15 21 21 C 1.39929 * 119.99983 * 185.27967 * 20 18 17 22 22 C 1.38868 * 120.06648 * 213.05048 * 21 20 18 23 23 C 1.38119 * 119.92671 * 180.31544 * 22 21 20 24 24 C 1.38280 * 120.06926 * 359.93449 * 23 22 21 25 25 C 1.38277 * 120.14426 * 0.03647 * 24 23 22 26 26 C 1.38111 * 120.06978 * 0.02562 * 25 24 23 27 27 C 1.50699 * 109.47007 * 295.00381 * 15 14 13 28 28 O 1.20825 * 119.99777 * 239.99781 * 27 15 14 29 29 O 1.34234 * 120.00210 * 59.99446 * 27 15 14 30 30 C 1.46962 * 110.87825 * 59.32391 * 13 12 11 31 31 C 1.46953 * 110.99959 * 293.79798 * 10 9 7 32 32 H 0.97008 * 120.00011 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.47402 * 59.99508 * 9 7 2 34 34 H 1.09008 * 109.46983 * 299.99229 * 9 7 2 35 35 H 1.09001 * 109.49152 * 63.22397 * 11 10 9 36 36 H 1.08995 * 109.49003 * 303.15129 * 11 10 9 37 37 H 1.09000 * 109.48897 * 181.63018 * 12 11 10 38 38 H 1.09002 * 109.48987 * 61.56820 * 12 11 10 39 39 H 1.09001 * 109.47299 * 50.00135 * 14 13 12 40 40 H 1.09012 * 109.47178 * 290.00514 * 14 13 12 41 41 H 1.09000 * 109.46992 * 65.00143 * 17 15 14 42 42 H 1.08995 * 109.47187 * 305.00467 * 17 15 14 43 43 H 0.96998 * 119.99964 * 5.26633 * 20 18 17 44 44 H 1.08001 * 120.04188 * 0.24533 * 22 21 20 45 45 H 1.08005 * 119.96636 * 179.97438 * 23 22 21 46 46 H 1.08007 * 119.92711 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.97048 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.03472 * 179.97438 * 26 25 24 49 49 H 0.96700 * 116.99988 * 180.02562 * 29 27 15 50 50 H 1.08997 * 109.48892 * 60.64785 * 30 13 12 51 51 H 1.09000 * 109.48696 * 180.71105 * 30 13 12 52 52 H 1.09002 * 109.48765 * 296.77960 * 31 10 9 53 53 H 1.09000 * 109.49204 * 56.84210 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5208 -4.8939 0.2389 12 6 2.5563 -6.0187 0.3105 13 7 3.3193 -6.0593 -0.9448 14 6 4.2739 -7.1758 -0.9449 15 6 4.8668 -7.3400 -2.3458 16 1 5.3035 -6.3948 -2.6685 17 6 5.9508 -8.4193 -2.3176 18 6 6.6190 -8.4955 -3.6662 19 8 6.2635 -7.7587 -4.5617 20 7 7.6116 -9.3824 -3.8773 21 6 8.3064 -9.3789 -5.0919 22 6 8.7871 -10.5691 -5.6218 23 6 9.4782 -10.5614 -6.8177 24 6 9.6904 -9.3706 -7.4877 25 6 9.2124 -8.1839 -6.9630 26 6 8.5217 -8.1845 -5.7670 27 6 3.7794 -7.7451 -3.3072 28 8 3.8628 -8.7900 -3.9081 29 8 2.7180 -6.9452 -3.4959 30 6 4.0041 -4.7810 -1.1831 31 6 2.9686 -3.6562 -1.2547 32 1 -0.4850 0.8401 -0.0004 33 1 0.6246 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8904 35 1 0.8252 -5.0915 -0.5768 36 1 0.9734 -4.8433 1.1800 37 1 2.0484 -6.9717 0.4583 38 1 3.2355 -5.8352 1.1431 39 1 3.7600 -8.0933 -0.6582 40 1 5.0739 -6.9700 -0.2336 41 1 5.4985 -9.3824 -2.0813 42 1 6.6921 -8.1700 -1.5584 43 1 7.8445 -10.0230 -3.1872 44 1 8.6218 -11.4995 -5.0990 45 1 9.8527 -11.4867 -7.2302 46 1 10.2307 -9.3673 -8.4229 47 1 9.3801 -7.2553 -7.4884 48 1 8.1491 -7.2573 -5.3574 49 1 2.0461 -7.2477 -4.1221 50 1 4.6997 -4.5835 -0.3676 51 1 4.5516 -4.8317 -2.1243 52 1 2.2894 -3.8397 -2.0873 53 1 3.4765 -2.7032 -1.4026 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061719864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -106.880670 kcal Electronic energy + Delta-G solvation = -34470.065898 eV Core-core repulsion = 29919.676092 eV Total energy + Delta-G solvation = -4550.389806 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.199 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.93683 -40.98469 -40.00404 -39.34845 -37.13137 -36.89656 -35.79314 -34.98183 -33.91505 -31.83315 -31.78653 -30.94043 -29.86834 -27.99920 -26.46064 -24.82990 -24.26790 -23.99243 -23.44986 -23.06364 -21.61484 -20.88729 -20.53665 -18.99257 -18.87429 -18.46147 -18.18205 -17.80858 -17.26468 -17.05023 -16.53522 -16.38726 -16.23982 -15.77519 -15.74652 -15.44636 -15.32151 -15.27644 -15.05447 -14.87899 -14.54355 -14.32075 -14.24260 -13.95559 -13.77449 -13.50401 -13.42431 -13.03756 -12.93131 -12.84807 -12.67421 -12.62851 -12.43550 -12.33389 -12.28327 -12.19256 -12.16314 -12.04111 -11.77128 -11.44442 -11.40011 -11.29812 -11.14635 -10.88844 -10.60234 -9.87000 -9.19181 -9.09698 -8.97362 -8.19532 -6.29842 0.31650 0.46244 1.40883 1.41175 1.44579 1.52327 1.63391 2.01213 2.31077 2.40781 2.89380 2.90671 3.12562 3.35140 3.48001 3.73146 3.93675 4.02880 4.05145 4.07180 4.12094 4.29165 4.29986 4.38244 4.45984 4.48410 4.52302 4.53544 4.58122 4.61822 4.65246 4.70168 4.74652 4.81991 4.88317 4.98228 5.05292 5.08451 5.10390 5.12753 5.26900 5.32763 5.36056 5.40945 5.57072 5.62639 5.64943 5.78976 6.03990 6.10255 6.12188 6.15804 6.38687 6.42133 6.66876 6.86156 7.13901 7.19340 7.39770 8.91380 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.001787 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.623872 B =15663.535295 C =16906.547149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.053 3.947 12 C 0.075 3.925 13 N -0.540 5.540 14 C 0.067 3.933 15 C -0.064 4.064 16 H 0.107 0.893 17 C -0.118 4.118 18 C 0.514 3.486 19 O -0.561 6.561 20 N -0.664 5.664 21 C 0.132 3.868 22 C -0.151 4.151 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.115 4.115 26 C -0.149 4.149 27 C 0.499 3.501 28 O -0.557 6.557 29 O -0.497 6.497 30 C 0.073 3.927 31 C 0.071 3.929 32 H 0.264 0.736 33 H -0.044 1.044 34 H 0.004 0.996 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.429 0.571 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.144 0.856 47 H 0.132 0.868 48 H 0.112 0.888 49 H 0.411 0.589 50 H 0.045 0.955 51 H 0.082 0.918 52 H 0.010 0.990 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.620 -26.643 -6.391 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.075 4.075 12 C -0.052 4.052 13 N -0.265 5.265 14 C -0.060 4.060 15 C -0.084 4.084 16 H 0.125 0.875 17 C -0.158 4.158 18 C 0.304 3.696 19 O -0.438 6.438 20 N -0.311 5.311 21 C 0.038 3.962 22 C -0.171 4.171 23 C -0.122 4.122 24 C -0.162 4.162 25 C -0.134 4.134 26 C -0.169 4.169 27 C 0.343 3.657 28 O -0.449 6.449 29 O -0.306 6.306 30 C -0.055 4.055 31 C -0.057 4.057 32 H 0.073 0.927 33 H -0.027 1.027 34 H 0.022 0.978 35 H 0.035 0.965 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.268 0.732 44 H 0.167 0.833 45 H 0.171 0.829 46 H 0.162 0.838 47 H 0.150 0.850 48 H 0.130 0.870 49 H 0.269 0.731 50 H 0.064 0.936 51 H 0.101 0.899 52 H 0.029 0.971 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.480 -26.121 -6.809 33.884 hybrid contribution -0.884 0.967 -0.493 1.399 sum 19.597 -25.155 -7.302 32.712 Atomic orbital electron populations 1.70092 1.07772 1.27904 1.51777 1.25940 0.95755 1.03264 0.94834 0.85427 0.78139 0.77854 0.79137 1.19351 1.20932 1.19093 1.21428 0.93604 0.91035 1.50028 0.91818 1.19340 0.90145 0.89181 0.93132 1.62234 1.27074 1.03016 1.34217 1.22165 0.95943 0.89713 0.99690 1.22036 0.95291 0.97913 0.89996 1.62022 1.26444 1.03064 1.34945 1.22087 0.95708 0.95298 0.92923 1.20932 0.91640 1.01425 0.94393 0.87487 1.21650 0.98134 1.01684 0.94338 1.21234 0.78336 0.78992 0.91034 1.90729 1.63337 1.43467 1.46301 1.43417 1.34222 1.37046 1.16397 1.17978 0.95563 0.94235 0.88404 1.21227 1.01756 0.96465 0.97626 1.21359 0.97475 0.99184 0.94158 1.21464 1.01139 0.92353 1.01231 1.21285 0.97255 0.99625 0.95210 1.21190 1.00578 0.97446 0.97703 1.23389 0.81885 0.80442 0.79952 1.90652 1.78674 1.26785 1.48760 1.84727 1.32390 1.51287 1.62219 1.22056 0.94549 0.87937 1.00919 1.21916 0.95761 0.98342 0.89721 0.92746 1.02656 0.97797 0.96547 0.91229 0.88361 0.93499 0.88381 0.90208 0.85527 0.82760 0.73227 0.83302 0.82927 0.83817 0.85034 0.87025 0.73067 0.93647 0.89940 0.97149 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.52 -30.11 8.47 25.60 0.22 -29.90 16 8 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 9 C 0.21 11.45 4.72 85.56 0.40 11.85 16 10 N -0.54 -23.69 4.70 -900.30 -4.23 -27.92 16 11 C 0.05 1.92 5.61 86.31 0.48 2.40 16 12 C 0.08 1.92 5.61 86.31 0.48 2.40 16 13 N -0.54 -13.26 3.54 -895.71 -3.17 -16.43 16 14 C 0.07 1.06 4.33 86.30 0.37 1.43 16 15 C -0.06 -1.15 1.90 -11.54 -0.02 -1.17 16 16 H 0.11 2.24 6.10 -2.38 -0.01 2.22 16 17 C -0.12 -1.35 4.83 29.84 0.14 -1.20 16 18 C 0.51 9.95 6.66 87.66 0.58 10.54 16 19 O -0.56 -16.47 12.26 13.48 0.17 -16.31 16 20 N -0.66 -9.56 5.34 -303.50 -1.62 -11.18 16 21 C 0.13 2.45 6.28 38.15 0.24 2.69 16 22 C -0.15 -2.08 9.96 22.39 0.22 -1.85 16 23 C -0.10 -1.29 10.04 22.25 0.22 -1.06 16 24 C -0.14 -2.04 10.04 22.29 0.22 -1.82 16 25 C -0.12 -2.12 10.04 22.25 0.22 -1.90 16 26 C -0.15 -3.30 8.66 22.39 0.19 -3.11 16 27 C 0.50 12.48 6.72 71.24 0.48 12.96 16 28 O -0.56 -16.51 15.33 27.72 0.42 -16.09 16 29 O -0.50 -12.71 12.31 -51.46 -0.63 -13.34 16 30 C 0.07 2.12 5.42 86.31 0.47 2.59 16 31 C 0.07 2.85 5.43 86.31 0.47 3.31 16 32 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 33 H -0.04 -2.69 8.12 -2.39 -0.02 -2.71 16 34 H 0.00 0.23 8.03 -2.38 -0.02 0.21 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 37 H 0.10 1.98 8.07 -2.39 -0.02 1.96 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 40 H 0.08 0.88 8.12 -2.38 -0.02 0.86 16 41 H 0.13 1.05 7.96 -2.39 -0.02 1.03 16 42 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.43 2.49 8.82 -92.71 -0.82 1.67 16 44 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.11 2.90 6.41 -2.91 -0.02 2.88 16 49 H 0.41 7.87 9.10 -74.06 -0.67 7.19 16 50 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 2.20 6.25 -2.39 -0.01 2.18 16 52 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 53 H 0.06 2.72 6.79 -2.39 -0.02 2.71 16 Total: -1.00 -84.64 426.05 -1.44 -86.08 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.55 Total: 16.75 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.87 Total: 8.62 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -8.74 Total: -112.54 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.04 Total: -45.73 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -84.64 -1.44 -86.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061719864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.804 kcal (2) G-P(sol) polarization free energy of solvation -84.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds