Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46698 * 2 1 4 4 C 1.46892 * 111.00738 * 301.64444 * 3 2 1 5 5 C 1.50703 * 109.47064 * 293.13363 * 4 3 2 6 6 H 1.08000 * 119.99933 * 3.14345 * 5 4 3 7 7 C 1.37878 * 119.99688 * 183.14117 * 5 4 3 8 8 N 1.31519 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47127 * 90.00031 * 9 7 5 11 11 H 1.48498 * 109.46982 * 210.00176 * 9 7 5 12 12 H 1.48501 * 109.46993 * 329.99987 * 9 7 5 13 13 C 1.46904 * 110.99959 * 65.60669 * 3 2 1 14 14 N 1.46500 * 109.47446 * 85.02491 * 13 3 2 15 15 C 1.35061 * 125.56485 * 90.02335 * 14 13 3 16 16 O 1.21301 * 127.28335 * 359.94638 * 15 14 13 17 17 C 1.49984 * 105.43081 * 179.97438 * 15 14 13 18 18 O 1.21293 * 127.28560 * 179.97438 * 17 15 14 19 19 N 1.35063 * 105.43061 * 359.97438 * 17 15 14 20 20 C 1.46503 * 125.56662 * 179.97438 * 19 17 15 21 21 C 1.50699 * 109.46863 * 90.03087 * 20 19 17 22 22 C 1.38273 * 119.94001 * 269.72696 * 21 20 19 23 23 C 1.38145 * 120.05422 * 179.72890 * 22 21 20 24 24 C 1.38738 * 119.94149 * 0.56119 * 23 22 21 25 25 O 1.35896 * 120.05260 * 179.68245 * 24 23 22 26 26 C 1.42894 * 117.00524 * 0.02831 * 25 24 23 27 27 C 1.38726 * 119.88893 * 359.71396 * 24 23 22 28 28 C 1.38146 * 119.94488 * 359.97438 * 27 24 23 29 29 C 1.34275 * 125.56844 * 269.71754 * 14 13 3 30 30 O 1.21492 * 124.29686 * 0.02562 * 29 14 13 31 31 H 1.09000 * 109.47727 * 177.45021 * 1 2 3 32 32 H 1.09001 * 109.47309 * 297.45203 * 1 2 3 33 33 H 1.09006 * 109.47535 * 57.44789 * 1 2 3 34 34 H 1.09003 * 109.46818 * 240.00844 * 2 1 3 35 35 H 1.08997 * 109.47300 * 120.00100 * 2 1 3 36 36 H 1.09002 * 109.46747 * 53.12642 * 4 3 2 37 37 H 1.08993 * 109.47391 * 173.12934 * 4 3 2 38 38 H 0.96996 * 119.99983 * 179.97438 * 8 7 5 39 39 H 1.08996 * 109.46770 * 205.02764 * 13 3 2 40 40 H 1.09001 * 109.46742 * 325.02549 * 13 3 2 41 41 H 1.08996 * 109.47142 * 210.02904 * 20 19 17 42 42 H 1.09002 * 109.46748 * 330.02884 * 20 19 17 43 43 H 1.07998 * 119.97307 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.02851 * 180.25081 * 23 22 21 45 45 H 1.09000 * 109.47310 * 299.99946 * 26 25 24 46 46 H 1.09011 * 109.47056 * 59.99450 * 26 25 24 47 47 H 1.09002 * 109.47643 * 179.97438 * 26 25 24 48 48 H 1.08005 * 120.02984 * 180.02562 * 27 24 23 49 49 H 1.08004 * 119.97507 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5168 2.1213 -1.1674 5 6 2.1209 1.5460 -2.4225 6 1 2.7696 0.6846 -2.3638 7 6 1.8454 2.1196 -3.6457 8 7 1.0550 3.1683 -3.7172 9 14 2.5948 1.4070 -5.2014 10 1 1.6863 0.3738 -5.7602 11 1 2.7864 2.4897 -6.1994 12 1 3.9075 0.7909 -4.8812 13 6 1.6610 2.0702 1.2490 14 7 2.6693 1.7808 2.2717 15 6 3.7848 2.5064 2.5025 16 8 4.1455 3.5057 1.9171 17 6 4.4836 1.8147 3.6351 18 8 5.5289 2.1363 4.1596 19 7 3.7026 0.7580 3.9475 20 6 3.9763 -0.2218 5.0017 21 6 3.3562 0.2442 6.2938 22 6 4.0857 1.0328 7.1643 23 6 3.5177 1.4660 8.3468 24 6 2.2182 1.0994 8.6658 25 8 1.6595 1.5189 9.8314 26 6 2.4673 2.3357 10.6812 27 6 1.4904 0.3035 7.7933 28 6 2.0608 -0.1217 6.6091 29 6 2.6325 0.7542 3.1364 30 8 1.7450 -0.0744 3.1779 31 1 -0.3634 -1.0266 -0.0457 32 1 -0.3634 0.4738 0.9119 33 1 -0.3634 0.5530 -0.8662 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.4313 2.0325 -1.2130 37 1 1.7920 3.1723 -1.0803 38 1 0.8615 3.5720 -4.5777 39 1 1.6187 3.1452 1.0744 40 1 0.6870 1.7187 1.5895 41 1 3.5510 -1.1854 4.7214 42 1 5.0537 -0.3241 5.1318 43 1 5.0990 1.3136 6.9179 44 1 4.0864 2.0852 9.0245 45 1 3.3643 1.7865 10.9674 46 1 2.7516 3.2437 10.1492 47 1 1.9023 2.6005 11.5749 48 1 0.4785 0.0171 8.0392 49 1 1.4945 -0.7411 5.9293 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064110899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = -47.079021 kcal Electronic energy + Delta-G solvation = -34751.329638 eV Core-core repulsion = 30067.699931 eV Total energy + Delta-G solvation = -4683.629707 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.28842 -40.52410 -39.24190 -38.97255 -37.93106 -37.29127 -36.37719 -34.87473 -32.64442 -31.76414 -31.38481 -29.62539 -28.55174 -27.69828 -26.50224 -25.48102 -24.78461 -23.31952 -23.03792 -22.26881 -21.74526 -21.09678 -19.68368 -18.58499 -17.80597 -17.75158 -17.07219 -16.70478 -16.44088 -16.32472 -16.14320 -15.94450 -15.45378 -15.29183 -15.14767 -15.04260 -14.74195 -14.41387 -14.28017 -14.09467 -13.93693 -13.82514 -13.13229 -13.06472 -12.71075 -12.62665 -12.49851 -12.47164 -12.19208 -11.97485 -11.78771 -11.51769 -11.24304 -11.17387 -11.14303 -10.97051 -10.77375 -10.66337 -10.38054 -10.17123 -10.12342 -10.01423 -9.70108 -9.36392 -9.31670 -8.57818 -8.49334 -7.52357 -6.08330 -4.09507 0.34310 0.83742 0.99560 1.90591 2.13582 2.50197 2.67877 2.85187 3.29617 3.36429 3.39612 3.40674 3.92318 4.28272 4.37386 4.38372 4.46091 4.54990 4.69908 4.71803 4.78384 4.91056 4.98932 5.03463 5.10638 5.16786 5.23057 5.28377 5.32041 5.40573 5.61125 5.64680 5.71237 5.73484 5.84442 5.92804 5.95706 6.08133 6.21169 6.36387 6.37538 6.56622 6.57916 6.75574 6.82550 6.96816 7.11259 7.21966 7.25635 7.55442 7.69846 7.91015 8.03730 8.37584 8.95772 9.54492 11.02341 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002087 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.453730 B =13412.434775 C =13937.038874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 N -0.547 5.547 4 C 0.194 3.806 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.275 3.725 14 N -0.559 5.559 15 C 0.509 3.491 16 O -0.402 6.402 17 C 0.509 3.491 18 O -0.422 6.422 19 N -0.573 5.573 20 C 0.168 3.832 21 C -0.161 4.161 22 C -0.054 4.054 23 C -0.213 4.213 24 C 0.137 3.863 25 O -0.317 6.317 26 C 0.026 3.974 27 C -0.155 4.155 28 C -0.050 4.050 29 C 0.711 3.289 30 O -0.489 6.489 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.133 0.867 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -5.658 27.041 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.069 4.069 3 N -0.272 5.272 4 C 0.070 3.930 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.065 3.935 14 N -0.308 5.308 15 C 0.288 3.712 16 O -0.265 6.265 17 C 0.290 3.710 18 O -0.287 6.287 19 N -0.322 5.322 20 C 0.049 3.951 21 C -0.162 4.162 22 C -0.073 4.073 23 C -0.231 4.231 24 C 0.091 3.909 25 O -0.230 6.230 26 C -0.069 4.069 27 C -0.174 4.174 28 C -0.069 4.069 29 C 0.414 3.586 30 O -0.358 6.358 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.151 0.849 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.083 -5.284 26.882 27.570 hybrid contribution -0.220 -0.136 -0.777 0.819 sum 2.862 -5.420 26.106 26.815 Atomic orbital electron populations 1.22349 0.98615 1.01648 1.01805 1.22056 0.92842 0.90142 1.01824 1.61919 1.60321 1.03073 1.01881 1.19847 0.94231 0.93650 0.85274 1.21051 1.28993 1.14276 0.90179 0.91904 1.24957 0.95321 0.94992 0.99186 1.69939 1.36565 1.21688 1.25386 0.86484 0.79613 0.78586 0.82665 1.20732 1.21234 1.19820 1.22302 0.86564 1.00379 0.84215 1.47189 1.24644 1.25925 1.33064 1.20734 0.81607 0.84624 0.84197 1.90859 1.65998 1.20734 1.48902 1.21167 0.84591 0.81033 0.84160 1.90787 1.18870 1.65606 1.53437 1.46886 1.22809 1.28357 1.34169 1.20540 1.02208 0.90564 0.81790 1.19906 0.95826 1.03494 0.97012 1.20958 0.99748 0.94109 0.92466 1.21232 0.95300 1.06412 1.00201 1.19148 0.91798 0.93884 0.86052 1.86080 1.42282 1.65655 1.29022 1.23089 0.96165 0.93884 0.93741 1.20460 1.01032 1.01481 0.94415 1.21027 0.93764 0.96950 0.95125 1.16010 0.82120 0.81850 0.78610 1.90979 1.35905 1.38444 1.70509 0.93013 0.93646 0.90904 0.89917 0.92468 0.97536 0.94670 0.92821 0.87543 0.90052 0.87090 0.87451 0.85174 0.85231 0.92511 0.92478 0.88118 0.84869 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.17 9.32 37.16 0.35 -2.82 16 2 C 0.06 1.10 5.83 -3.82 -0.02 1.07 16 3 N -0.55 -11.07 4.79 -239.98 -1.15 -12.22 16 4 C 0.19 4.70 4.41 -4.98 -0.02 4.68 16 5 C -0.51 -13.64 8.61 -34.44 -0.30 -13.93 16 6 H 0.06 1.69 7.04 -52.49 -0.37 1.32 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 13 C 0.28 4.64 5.59 -63.31 -0.35 4.29 16 14 N -0.56 -8.54 2.90 -124.51 -0.36 -8.90 16 15 C 0.51 8.02 8.31 -11.20 -0.09 7.93 16 16 O -0.40 -7.51 17.88 5.54 0.10 -7.41 16 17 C 0.51 6.82 8.31 -11.20 -0.09 6.73 16 18 O -0.42 -6.04 17.88 5.55 0.10 -5.94 16 19 N -0.57 -6.65 2.64 -122.51 -0.32 -6.97 16 20 C 0.17 1.44 5.98 -5.19 -0.03 1.41 16 21 C -0.16 -1.45 5.46 -104.60 -0.57 -2.02 16 22 C -0.05 -0.47 9.69 -39.60 -0.38 -0.86 16 23 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 24 C 0.14 1.28 6.69 -39.22 -0.26 1.02 16 25 O -0.32 -2.81 10.50 -19.41 -0.20 -3.02 16 26 C 0.03 0.13 9.81 101.05 0.99 1.13 16 27 C -0.16 -1.43 9.99 -39.43 -0.39 -1.83 16 28 C -0.05 -0.45 9.69 -39.61 -0.38 -0.84 16 29 C 0.71 9.72 7.83 -87.82 -0.69 9.03 16 30 O -0.49 -7.14 15.88 5.37 0.09 -7.05 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.72 6.30 -51.93 -0.33 0.39 16 33 H 0.07 1.41 6.09 -51.93 -0.32 1.10 16 34 H 0.08 1.66 6.90 -51.93 -0.36 1.30 16 35 H 0.06 0.99 6.11 -51.93 -0.32 0.68 16 36 H 0.01 0.17 5.86 -51.93 -0.30 -0.13 16 37 H 0.04 0.93 7.76 -51.93 -0.40 0.53 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.11 1.80 7.52 -51.93 -0.39 1.41 16 40 H 0.08 1.27 5.66 -51.93 -0.29 0.98 16 41 H 0.11 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.11 0.74 8.04 -51.93 -0.42 0.33 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 45 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 46 H 0.06 0.26 7.66 -51.92 -0.40 -0.14 16 47 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 49 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -31.87 412.24 -8.82 -40.69 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.28 Total: -0.96 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -2.71 Total: 14.30 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -1.10 Total: -53.13 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.08 Total: -23.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.87 -8.82 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064110899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.391 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds