Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46698 * 2 1 4 4 C 1.46892 * 111.00738 * 301.64444 * 3 2 1 5 5 C 1.50703 * 109.47064 * 293.13363 * 4 3 2 6 6 H 1.08000 * 119.99933 * 3.14345 * 5 4 3 7 7 C 1.37878 * 119.99688 * 183.14117 * 5 4 3 8 8 N 1.31519 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47127 * 90.00031 * 9 7 5 11 11 H 1.48498 * 109.46982 * 210.00176 * 9 7 5 12 12 H 1.48501 * 109.46993 * 329.99987 * 9 7 5 13 13 C 1.46904 * 110.99959 * 65.60669 * 3 2 1 14 14 N 1.46500 * 109.47446 * 85.02491 * 13 3 2 15 15 C 1.35061 * 125.56485 * 90.02335 * 14 13 3 16 16 O 1.21301 * 127.28335 * 359.94638 * 15 14 13 17 17 C 1.49984 * 105.43081 * 179.97438 * 15 14 13 18 18 O 1.21293 * 127.28560 * 179.97438 * 17 15 14 19 19 N 1.35063 * 105.43061 * 359.97438 * 17 15 14 20 20 C 1.46503 * 125.56662 * 179.97438 * 19 17 15 21 21 C 1.50699 * 109.46863 * 90.03087 * 20 19 17 22 22 C 1.38273 * 119.94001 * 269.72696 * 21 20 19 23 23 C 1.38145 * 120.05422 * 179.72890 * 22 21 20 24 24 C 1.38738 * 119.94149 * 0.56119 * 23 22 21 25 25 O 1.35896 * 120.05260 * 179.68245 * 24 23 22 26 26 C 1.42894 * 117.00524 * 0.02831 * 25 24 23 27 27 C 1.38726 * 119.88893 * 359.71396 * 24 23 22 28 28 C 1.38146 * 119.94488 * 359.97438 * 27 24 23 29 29 C 1.34275 * 125.56844 * 269.71754 * 14 13 3 30 30 O 1.21492 * 124.29686 * 0.02562 * 29 14 13 31 31 H 1.09000 * 109.47727 * 177.45021 * 1 2 3 32 32 H 1.09001 * 109.47309 * 297.45203 * 1 2 3 33 33 H 1.09006 * 109.47535 * 57.44789 * 1 2 3 34 34 H 1.09003 * 109.46818 * 240.00844 * 2 1 3 35 35 H 1.08997 * 109.47300 * 120.00100 * 2 1 3 36 36 H 1.09002 * 109.46747 * 53.12642 * 4 3 2 37 37 H 1.08993 * 109.47391 * 173.12934 * 4 3 2 38 38 H 0.96996 * 119.99983 * 179.97438 * 8 7 5 39 39 H 1.08996 * 109.46770 * 205.02764 * 13 3 2 40 40 H 1.09001 * 109.46742 * 325.02549 * 13 3 2 41 41 H 1.08996 * 109.47142 * 210.02904 * 20 19 17 42 42 H 1.09002 * 109.46748 * 330.02884 * 20 19 17 43 43 H 1.07998 * 119.97307 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.02851 * 180.25081 * 23 22 21 45 45 H 1.09000 * 109.47310 * 299.99946 * 26 25 24 46 46 H 1.09011 * 109.47056 * 59.99450 * 26 25 24 47 47 H 1.09002 * 109.47643 * 179.97438 * 26 25 24 48 48 H 1.08005 * 120.02984 * 180.02562 * 27 24 23 49 49 H 1.08004 * 119.97507 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5168 2.1213 -1.1674 5 6 2.1209 1.5460 -2.4225 6 1 2.7696 0.6846 -2.3638 7 6 1.8454 2.1196 -3.6457 8 7 1.0550 3.1683 -3.7172 9 14 2.5948 1.4070 -5.2014 10 1 1.6863 0.3738 -5.7602 11 1 2.7864 2.4897 -6.1994 12 1 3.9075 0.7909 -4.8812 13 6 1.6610 2.0702 1.2490 14 7 2.6693 1.7808 2.2717 15 6 3.7848 2.5064 2.5025 16 8 4.1455 3.5057 1.9171 17 6 4.4836 1.8147 3.6351 18 8 5.5289 2.1363 4.1596 19 7 3.7026 0.7580 3.9475 20 6 3.9763 -0.2218 5.0017 21 6 3.3562 0.2442 6.2938 22 6 4.0857 1.0328 7.1643 23 6 3.5177 1.4660 8.3468 24 6 2.2182 1.0994 8.6658 25 8 1.6595 1.5189 9.8314 26 6 2.4673 2.3357 10.6812 27 6 1.4904 0.3035 7.7933 28 6 2.0608 -0.1217 6.6091 29 6 2.6325 0.7542 3.1364 30 8 1.7450 -0.0744 3.1779 31 1 -0.3634 -1.0266 -0.0457 32 1 -0.3634 0.4738 0.9119 33 1 -0.3634 0.5530 -0.8662 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.4313 2.0325 -1.2130 37 1 1.7920 3.1723 -1.0803 38 1 0.8615 3.5720 -4.5777 39 1 1.6187 3.1452 1.0744 40 1 0.6870 1.7187 1.5895 41 1 3.5510 -1.1854 4.7214 42 1 5.0537 -0.3241 5.1318 43 1 5.0990 1.3136 6.9179 44 1 4.0864 2.0852 9.0245 45 1 3.3643 1.7865 10.9674 46 1 2.7516 3.2437 10.1492 47 1 1.9023 2.6005 11.5749 48 1 0.4785 0.0171 8.0392 49 1 1.4945 -0.7411 5.9293 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064110899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -67.084280 kcal Electronic energy + Delta-G solvation = -34752.197131 eV Core-core repulsion = 30067.699931 eV Total energy + Delta-G solvation = -4684.497200 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.44452 -41.16297 -40.43452 -40.15050 -38.83798 -38.62702 -37.54565 -36.02688 -34.64506 -32.60475 -32.05841 -31.08797 -29.79114 -28.61519 -27.69579 -26.53175 -26.11100 -25.05861 -23.78788 -23.26245 -22.93155 -21.97150 -21.23501 -19.23614 -18.92738 -18.88178 -18.35286 -18.23489 -17.68962 -17.15646 -16.99322 -16.81669 -16.75970 -16.65189 -16.48840 -16.34190 -15.94768 -15.63620 -15.37544 -15.12977 -14.79341 -14.74636 -14.47119 -14.29140 -13.95023 -13.65803 -13.57373 -13.27702 -13.20418 -13.17085 -13.07966 -12.81748 -12.73576 -12.58933 -12.51171 -12.17399 -12.01285 -11.90594 -11.77941 -11.76606 -11.48242 -11.28147 -11.14916 -11.06293 -10.57818 -10.01724 -9.23753 -9.17780 -8.18656 -6.26553 -0.84577 0.10594 0.34251 0.80580 1.01301 1.38962 1.41713 1.43289 1.46737 1.53975 2.33268 2.41243 2.68975 2.78186 3.13422 3.24601 3.44570 3.70196 3.75735 3.88908 3.94990 4.06782 4.18593 4.22627 4.26510 4.30656 4.37295 4.38194 4.41199 4.49267 4.56126 4.61469 4.66284 4.72604 4.73615 4.88515 5.01375 5.03926 5.17939 5.20043 5.31406 5.32849 5.41580 5.49599 5.52911 5.63982 5.65150 5.73796 6.00023 6.05000 6.23831 6.38188 6.40650 6.51348 6.86061 7.41588 8.91752 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002087 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.453730 B =13412.434775 C =13937.038874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 N -0.560 5.560 4 C 0.211 3.789 5 C -0.518 4.518 6 H 0.059 0.941 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.280 3.720 14 N -0.562 5.562 15 C 0.507 3.493 16 O -0.439 6.439 17 C 0.525 3.475 18 O -0.425 6.425 19 N -0.557 5.557 20 C 0.164 3.836 21 C -0.168 4.168 22 C -0.059 4.059 23 C -0.216 4.216 24 C 0.127 3.873 25 O -0.335 6.335 26 C 0.018 3.982 27 C -0.169 4.169 28 C -0.054 4.054 29 C 0.716 3.284 30 O -0.492 6.492 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.074 0.926 36 H -0.003 1.003 37 H 0.006 0.994 38 H 0.264 0.736 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.118 0.882 48 H 0.138 0.862 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -7.157 28.462 29.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.063 4.063 3 N -0.285 5.285 4 C 0.086 3.914 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.070 3.930 14 N -0.311 5.311 15 C 0.288 3.712 16 O -0.305 6.305 17 C 0.306 3.694 18 O -0.291 6.291 19 N -0.306 5.306 20 C 0.046 3.954 21 C -0.169 4.169 22 C -0.077 4.077 23 C -0.235 4.235 24 C 0.081 3.919 25 O -0.249 6.249 26 C -0.077 4.077 27 C -0.188 4.188 28 C -0.072 4.072 29 C 0.419 3.581 30 O -0.361 6.361 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.015 0.985 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.137 0.863 48 H 0.156 0.844 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.726 -6.829 28.364 29.411 hybrid contribution -0.439 0.323 -1.060 1.192 sum 3.287 -6.506 27.304 28.260 Atomic orbital electron populations 1.22229 0.97382 1.02649 1.01149 1.22018 0.93808 0.88893 1.01624 1.61748 1.60975 1.03777 1.01976 1.19435 0.93397 0.92268 0.86341 1.21360 1.28727 1.14094 0.91474 0.92297 1.25778 0.95777 0.95352 1.02367 1.70051 1.37846 1.22920 1.26144 0.85480 0.78916 0.77966 0.78829 1.19718 1.21046 1.19453 1.22189 0.87647 0.99897 0.83240 1.47068 1.24394 1.26627 1.33005 1.21200 0.81567 0.84073 0.84402 1.90838 1.66884 1.22364 1.50440 1.20592 0.84399 0.81133 0.83304 1.90797 1.19095 1.65813 1.53408 1.46892 1.21416 1.28118 1.34163 1.20911 1.03738 0.90136 0.80581 1.19958 0.95884 1.03868 0.97230 1.21132 1.00164 0.93919 0.92532 1.21457 0.95162 1.06369 1.00467 1.19334 0.92212 0.93990 0.86382 1.86058 1.43477 1.66186 1.29147 1.23355 0.96723 0.93740 0.93847 1.20643 1.01504 1.01861 0.94761 1.21114 0.93933 0.97020 0.95158 1.15955 0.82474 0.81223 0.78424 1.90982 1.36129 1.38409 1.70575 0.90951 0.92282 0.93666 0.91797 0.90814 0.98500 0.97609 0.92743 0.88220 0.88316 0.85422 0.85343 0.84338 0.83476 0.91380 0.92006 0.86342 0.84420 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 9.32 71.98 0.67 -5.12 16 2 C 0.06 2.32 5.83 86.30 0.50 2.82 16 3 N -0.56 -22.75 4.79 -913.17 -4.38 -27.13 16 4 C 0.21 10.52 4.41 85.56 0.38 10.90 16 5 C -0.52 -28.35 8.61 25.60 0.22 -28.13 16 6 H 0.06 3.20 7.04 -2.91 -0.02 3.18 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.28 9.40 5.59 170.80 0.95 10.35 16 14 N -0.56 -16.72 2.90 -784.65 -2.28 -18.99 16 15 C 0.51 15.79 8.31 87.39 0.73 16.52 16 16 O -0.44 -16.75 17.88 -3.10 -0.06 -16.81 16 17 C 0.53 13.26 8.31 87.39 0.73 13.98 16 18 O -0.43 -11.43 17.88 -3.07 -0.05 -11.48 16 19 N -0.56 -11.71 2.64 -778.31 -2.06 -13.77 16 20 C 0.16 2.35 5.98 85.63 0.51 2.86 16 21 C -0.17 -2.67 5.46 -19.85 -0.11 -2.78 16 22 C -0.06 -0.91 9.69 22.26 0.22 -0.69 16 23 C -0.22 -3.28 9.04 22.37 0.20 -3.08 16 24 C 0.13 2.22 6.69 22.51 0.15 2.37 16 25 O -0.34 -5.57 10.50 -92.38 -0.97 -6.54 16 26 C 0.02 0.15 9.81 113.37 1.11 1.26 16 27 C -0.17 -2.95 9.99 22.36 0.22 -2.73 16 28 C -0.05 -0.89 9.69 22.25 0.22 -0.67 16 29 C 0.72 18.19 7.83 179.37 1.40 19.59 16 30 O -0.49 -13.10 15.88 -3.69 -0.06 -13.16 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.76 6.30 -2.39 -0.02 1.75 16 33 H 0.04 1.75 6.09 -2.38 -0.01 1.73 16 34 H 0.06 2.54 6.90 -2.39 -0.02 2.53 16 35 H 0.07 2.42 6.11 -2.39 -0.01 2.41 16 36 H 0.00 -0.13 5.86 -2.39 -0.01 -0.15 16 37 H 0.01 0.32 7.76 -2.39 -0.02 0.30 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.10 3.47 7.52 -2.39 -0.02 3.45 16 40 H 0.10 2.97 5.66 -2.39 -0.01 2.95 16 41 H 0.13 1.46 7.93 -2.39 -0.02 1.44 16 42 H 0.13 1.36 8.04 -2.39 -0.02 1.34 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 45 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 46 H 0.06 0.47 7.66 -2.38 -0.02 0.45 16 47 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 49 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -68.58 412.24 2.03 -66.55 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.00 Total: 11.23 kcal Atomic # 6 Polarization: 29.66 SS G_CDS: 8.57 Total: 38.23 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -8.43 Total: -113.98 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.14 Total: -47.98 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.58 2.03 -66.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064110899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.534 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds