Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86795 * 120.00301 * 2 1 4 4 H 1.48492 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47069 * 300.00342 * 3 2 1 6 6 H 1.48508 * 109.47022 * 60.00016 * 3 2 1 7 7 C 1.39066 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00189 * 162.65709 * 7 2 1 9 9 N 1.37097 * 119.99649 * 342.65691 * 7 2 1 10 10 C 1.36238 * 119.96494 * 331.03915 * 9 7 2 11 11 N 1.29727 * 122.03710 * 179.97438 * 10 9 7 12 12 C 1.36003 * 121.63694 * 0.02562 * 11 10 9 13 13 C 1.45158 * 130.07787 * 179.97438 * 12 11 10 14 14 C 1.48247 * 122.90737 * 0.04391 * 13 12 11 15 15 C 1.39422 * 120.11886 * 309.72247 * 14 13 12 16 16 C 1.37986 * 119.87766 * 179.77190 * 15 14 13 17 17 C 1.38415 * 120.12273 * 0.50759 * 16 15 14 18 18 Br 1.89094 * 119.88239 * 179.76727 * 17 16 15 19 19 C 1.38422 * 120.23721 * 359.74783 * 17 16 15 20 20 C 1.37983 * 120.11888 * 359.97438 * 19 17 16 21 21 C 1.33889 * 114.18220 * 180.02562 * 13 12 11 22 22 S 1.70144 * 112.01852 * 0.23346 * 21 13 12 23 23 C 1.38988 * 118.75558 * 359.97438 * 12 11 10 24 24 C 1.34893 * 119.95981 * 151.01811 * 9 7 2 25 25 O 1.21956 * 120.67055 * 359.97438 * 24 9 7 26 26 H 0.97000 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.08006 * 118.97901 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.05646 * 359.97438 * 15 14 13 29 29 H 1.08006 * 119.93648 * 180.22754 * 16 15 14 30 30 H 1.08002 * 119.94329 * 179.97438 * 19 17 16 31 31 H 1.08006 * 120.06282 * 180.02562 * 20 19 17 32 32 H 1.07999 * 123.98788 * 179.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.7066 1.3463 0.0006 5 1 1.8879 2.3964 -1.2125 6 1 1.8879 2.3964 1.2126 7 6 2.0079 -1.2043 -0.0005 8 1 3.0511 -1.2255 -0.2793 9 7 1.3691 -2.3648 0.3529 10 6 0.3256 -2.3277 1.2280 11 7 -0.3076 -3.4007 1.5896 12 6 0.0370 -4.6271 1.1135 13 6 -0.5361 -5.9318 1.3899 14 6 -1.6802 -6.1300 2.3114 15 6 -1.6536 -5.5739 3.5897 16 6 -2.7233 -5.7576 4.4417 17 6 -3.8170 -6.5012 4.0332 18 35 -5.2764 -6.7541 5.2087 19 6 -3.8464 -7.0600 2.7671 20 6 -2.7846 -6.8778 1.9050 21 6 0.0580 -6.9406 0.7402 22 16 1.3420 -6.4015 -0.2374 23 6 1.0949 -4.7233 0.2172 24 6 1.7743 -3.5419 -0.1666 25 8 2.7066 -3.5875 -0.9515 26 1 -0.4850 0.8400 0.0004 27 1 0.0161 -1.3756 1.6332 28 1 -0.7985 -4.9977 3.9111 29 1 -2.7052 -5.3242 5.4308 30 1 -4.7020 -7.6397 2.4535 31 1 -2.8086 -7.3139 0.9172 32 1 -0.2399 -7.9748 0.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064667797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = 45.767310 kcal Electronic energy + Delta-G solvation = -22173.478090 eV Core-core repulsion = 18657.690907 eV Total energy + Delta-G solvation = -3515.787183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 375.962 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.58226 -39.25424 -36.91983 -35.89829 -33.99331 -32.15280 -31.67066 -31.02354 -29.71904 -28.28275 -26.24869 -24.21987 -23.00723 -22.66019 -22.27498 -19.81264 -19.04780 -17.72913 -16.58292 -16.49429 -15.84468 -15.61718 -15.11827 -15.00883 -14.79615 -14.41856 -13.83020 -13.49361 -13.34959 -13.12721 -12.74933 -12.56412 -12.45161 -12.18007 -11.69591 -11.52008 -11.46836 -11.29720 -11.03486 -10.82258 -10.68681 -10.54138 -10.33886 -9.87631 -9.15505 -9.07578 -8.98267 -8.83165 -8.79985 -8.06133 -7.26836 -6.98907 -4.74341 0.84107 1.25065 1.38922 1.59684 1.99289 2.19274 2.55864 2.84747 2.92714 3.00687 3.12347 3.61817 3.72500 4.13028 4.31243 4.66199 4.82122 4.88353 4.89383 4.94872 5.39010 5.39552 5.48490 5.66467 5.75259 5.92722 6.01452 6.18781 6.24236 6.25242 6.44818 6.66616 6.80000 6.85405 6.89866 7.29902 7.79842 8.13397 8.43270 8.97841 9.17029 9.88498 Molecular weight = 375.96amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.002627 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.277287 B =10657.596844 C =12567.020903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.047 3.953 3 Si 0.947 3.053 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.330 4.330 8 H 0.123 0.877 9 N -0.336 5.336 10 C 0.360 3.640 11 N -0.542 5.542 12 C 0.171 3.829 13 C -0.065 4.065 14 C 0.014 3.986 15 C -0.079 4.079 16 C -0.090 4.090 17 C -0.096 4.096 18 Br -0.065 7.065 19 C -0.093 4.093 20 C -0.107 4.107 21 C -0.216 4.216 22 S 0.205 5.795 23 C -0.353 4.353 24 C 0.518 3.482 25 O -0.566 6.566 26 H 0.291 0.709 27 H 0.205 0.795 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -10.632 9.176 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.459 4.459 8 H 0.140 0.860 9 N -0.035 5.035 10 C 0.078 3.922 11 N -0.268 5.268 12 C 0.040 3.960 13 C -0.083 4.083 14 C 0.011 3.989 15 C -0.099 4.099 16 C -0.110 4.110 17 C -0.175 4.175 18 Br 0.020 6.980 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.354 4.354 22 S 0.470 5.530 23 C -0.476 4.476 24 C 0.317 3.683 25 O -0.448 6.448 26 H 0.102 0.898 27 H 0.221 0.779 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.604 -11.371 8.628 16.666 hybrid contribution -0.079 1.541 -0.039 1.544 sum -8.683 -9.829 8.589 15.677 Atomic orbital electron populations 1.69764 1.06604 1.30417 1.40148 1.25773 0.95717 1.01365 0.93639 0.85533 0.80115 0.78582 0.78793 1.18207 1.19669 1.19303 1.20277 0.97270 0.81888 1.46489 0.85988 1.42708 1.24043 1.08268 1.28460 1.24940 0.84538 0.97559 0.85187 1.68204 1.31305 0.95906 1.31362 1.19582 0.91374 0.91841 0.93208 1.17862 0.98710 0.90218 1.01487 1.18480 0.92453 0.95297 0.92659 1.21256 0.98346 0.97792 0.92484 1.21014 0.92177 0.97514 1.00297 1.21732 0.94743 1.05551 0.95480 1.96659 1.42413 1.96561 1.62342 1.20924 0.98924 0.99477 0.91964 1.21211 0.92627 0.99156 0.99617 1.24865 1.03668 1.03026 1.03856 1.82485 1.29491 0.96259 1.44735 1.24330 1.09723 0.99276 1.14305 1.16050 0.86342 0.82818 0.83065 1.90770 1.30941 1.86341 1.36790 0.89814 0.77909 0.84697 0.85093 0.85227 0.85179 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.52 11.19 55.50 0.62 -18.90 16 2 C 0.05 1.06 5.00 -17.49 -0.09 0.97 16 3 Si 0.95 17.40 29.59 -169.99 -5.03 12.37 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.33 -8.25 9.11 -14.89 -0.14 -8.39 16 8 H 0.12 3.12 7.59 -52.49 -0.40 2.72 16 9 N -0.34 -8.47 2.75 -65.66 -0.18 -8.65 16 10 C 0.36 8.33 10.28 -89.91 -0.92 7.41 16 11 N -0.54 -11.95 10.43 -10.99 -0.11 -12.06 16 12 C 0.17 3.62 6.96 -82.99 -0.58 3.04 16 13 C -0.07 -1.13 5.50 -104.57 -0.58 -1.71 16 14 C 0.01 0.21 5.61 -104.90 -0.59 -0.38 16 15 C -0.08 -1.15 9.63 -39.23 -0.38 -1.53 16 16 C -0.09 -1.15 9.77 -39.61 -0.39 -1.54 16 17 C -0.10 -1.18 6.23 -39.45 -0.25 -1.42 16 18 Br -0.06 -0.70 33.69 -68.01 -2.29 -2.99 16 19 C -0.09 -1.11 9.77 -39.61 -0.39 -1.49 16 20 C -0.11 -1.38 9.59 -39.24 -0.38 -1.76 16 21 C -0.22 -3.26 10.40 29.20 0.30 -2.95 16 22 S 0.20 3.59 22.99 -107.50 -2.47 1.12 16 23 C -0.35 -7.96 6.47 -38.03 -0.25 -8.21 16 24 C 0.52 13.45 7.42 -14.93 -0.11 13.34 16 25 O -0.57 -15.96 16.95 4.96 0.08 -15.87 16 26 H 0.29 6.15 8.31 -40.82 -0.34 5.81 16 27 H 0.20 4.53 6.17 -52.48 -0.32 4.21 16 28 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -28.15 323.00 -11.20 -39.36 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -1.97 Total: 5.39 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.72 Total: -4.62 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.33 Total: -39.62 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.47 Total: 1.12 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.29 Total: -2.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.15 -11.20 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064667797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.123 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds