Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86795 * 120.00301 * 2 1 4 4 H 1.48492 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47069 * 300.00342 * 3 2 1 6 6 H 1.48508 * 109.47022 * 60.00016 * 3 2 1 7 7 C 1.39066 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00189 * 162.65709 * 7 2 1 9 9 N 1.37097 * 119.99649 * 342.65691 * 7 2 1 10 10 C 1.36238 * 119.96494 * 331.03915 * 9 7 2 11 11 N 1.29727 * 122.03710 * 179.97438 * 10 9 7 12 12 C 1.36003 * 121.63694 * 0.02562 * 11 10 9 13 13 C 1.45158 * 130.07787 * 179.97438 * 12 11 10 14 14 C 1.48247 * 122.90737 * 0.04391 * 13 12 11 15 15 C 1.39422 * 120.11886 * 309.72247 * 14 13 12 16 16 C 1.37986 * 119.87766 * 179.77190 * 15 14 13 17 17 C 1.38415 * 120.12273 * 0.50759 * 16 15 14 18 18 Br 1.89094 * 119.88239 * 179.76727 * 17 16 15 19 19 C 1.38422 * 120.23721 * 359.74783 * 17 16 15 20 20 C 1.37983 * 120.11888 * 359.97438 * 19 17 16 21 21 C 1.33889 * 114.18220 * 180.02562 * 13 12 11 22 22 S 1.70144 * 112.01852 * 0.23346 * 21 13 12 23 23 C 1.38988 * 118.75558 * 359.97438 * 12 11 10 24 24 C 1.34893 * 119.95981 * 151.01811 * 9 7 2 25 25 O 1.21956 * 120.67055 * 359.97438 * 24 9 7 26 26 H 0.97000 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.08006 * 118.97901 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.05646 * 359.97438 * 15 14 13 29 29 H 1.08006 * 119.93648 * 180.22754 * 16 15 14 30 30 H 1.08002 * 119.94329 * 179.97438 * 19 17 16 31 31 H 1.08006 * 120.06282 * 180.02562 * 20 19 17 32 32 H 1.07999 * 123.98788 * 179.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.7066 1.3463 0.0006 5 1 1.8879 2.3964 -1.2125 6 1 1.8879 2.3964 1.2126 7 6 2.0079 -1.2043 -0.0005 8 1 3.0511 -1.2255 -0.2793 9 7 1.3691 -2.3648 0.3529 10 6 0.3256 -2.3277 1.2280 11 7 -0.3076 -3.4007 1.5896 12 6 0.0370 -4.6271 1.1135 13 6 -0.5361 -5.9318 1.3899 14 6 -1.6802 -6.1300 2.3114 15 6 -1.6536 -5.5739 3.5897 16 6 -2.7233 -5.7576 4.4417 17 6 -3.8170 -6.5012 4.0332 18 35 -5.2764 -6.7541 5.2087 19 6 -3.8464 -7.0600 2.7671 20 6 -2.7846 -6.8778 1.9050 21 6 0.0580 -6.9406 0.7402 22 16 1.3420 -6.4015 -0.2374 23 6 1.0949 -4.7233 0.2172 24 6 1.7743 -3.5419 -0.1666 25 8 2.7066 -3.5875 -0.9515 26 1 -0.4850 0.8400 0.0004 27 1 0.0161 -1.3756 1.6332 28 1 -0.7985 -4.9977 3.9111 29 1 -2.7052 -5.3242 5.4308 30 1 -4.7020 -7.6397 2.4535 31 1 -2.8086 -7.3139 0.9172 32 1 -0.2399 -7.9748 0.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064667797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = 32.560118 kcal Electronic energy + Delta-G solvation = -22174.050797 eV Core-core repulsion = 18657.690907 eV Total energy + Delta-G solvation = -3516.359890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 375.962 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36821 -40.36453 -38.55353 -37.67244 -35.59009 -33.67709 -33.03460 -32.02581 -31.10994 -29.54192 -28.01029 -25.82297 -24.61753 -23.84142 -23.50613 -21.15272 -20.78932 -19.38157 -18.22533 -17.85229 -17.36758 -17.21817 -16.70104 -16.27580 -16.05250 -15.94384 -15.35159 -14.74625 -14.54728 -14.41518 -14.22113 -14.04310 -13.93898 -13.76229 -13.51225 -13.08379 -12.79027 -12.60636 -12.21174 -12.13350 -11.92778 -11.75522 -11.52035 -11.22401 -11.09148 -10.80593 -10.58004 -10.10586 -9.96532 -9.42190 -8.95283 -8.59023 -6.63112 -0.51321 -0.07420 0.39875 0.50943 0.63603 0.66281 1.09777 1.29274 1.39123 1.49318 1.56309 2.05435 2.39000 2.52593 2.66823 3.03957 3.15754 3.61019 3.88279 3.92308 3.99569 4.23109 4.31085 4.40565 4.46286 4.64460 4.75088 4.89842 5.02550 5.06233 5.15801 5.24251 5.32716 5.45418 5.61173 5.83754 5.96536 6.28290 6.59969 7.16485 7.28584 8.16493 Molecular weight = 375.96amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.002627 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.277287 B =10657.596844 C =12567.020903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.023 3.977 3 Si 1.016 2.984 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.248 1.248 7 C -0.374 4.374 8 H 0.103 0.897 9 N -0.346 5.346 10 C 0.356 3.644 11 N -0.538 5.538 12 C 0.163 3.837 13 C -0.079 4.079 14 C -0.007 4.007 15 C -0.093 4.093 16 C -0.092 4.092 17 C -0.100 4.100 18 Br -0.048 7.048 19 C -0.089 4.089 20 C -0.102 4.102 21 C -0.182 4.182 22 S 0.238 5.762 23 C -0.390 4.390 24 C 0.493 3.507 25 O -0.610 6.610 26 H 0.301 0.699 27 H 0.208 0.792 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 -12.174 10.013 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.187 4.187 3 Si 0.835 3.165 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.502 4.502 8 H 0.120 0.880 9 N -0.046 5.046 10 C 0.073 3.927 11 N -0.263 5.263 12 C 0.031 3.969 13 C -0.095 4.095 14 C -0.009 4.009 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.179 4.179 18 Br 0.037 6.963 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.319 4.319 22 S 0.503 5.497 23 C -0.512 4.512 24 C 0.295 3.705 25 O -0.497 6.497 26 H 0.113 0.887 27 H 0.224 0.776 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.709 -12.944 9.501 19.300 hybrid contribution 0.412 1.830 -0.220 1.888 sum -10.297 -11.114 9.281 17.768 Atomic orbital electron populations 1.69782 1.07722 1.31939 1.39805 1.26637 0.96432 1.03654 0.91950 0.84567 0.78282 0.74121 0.79526 1.18821 1.19169 1.17201 1.20329 0.97096 0.83071 1.49719 0.87966 1.42809 1.24517 1.08332 1.28920 1.25056 0.84229 0.98172 0.85203 1.68214 1.30836 0.96366 1.30879 1.20187 0.91264 0.92889 0.92555 1.17952 1.00075 0.88548 1.02940 1.18464 0.92749 0.97217 0.92486 1.21213 0.98688 0.98339 0.93044 1.21138 0.91870 0.97524 1.00648 1.21951 0.94960 1.04905 0.96115 1.96685 1.41307 1.96428 1.61879 1.21231 0.99280 0.98921 0.91398 1.21415 0.91775 0.98324 1.00610 1.25391 1.01003 1.04732 1.00820 1.82354 1.30272 0.92398 1.44694 1.24593 1.10100 1.01066 1.15434 1.16621 0.86592 0.84144 0.83193 1.90699 1.32896 1.87092 1.38967 0.88722 0.77619 0.86195 0.83811 0.82671 0.83067 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -40.85 11.19 21.68 0.24 -40.60 16 2 C 0.02 1.06 5.00 84.98 0.42 1.49 16 3 Si 1.02 36.00 29.59 68.60 2.03 38.03 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.25 -7.98 7.11 99.48 0.71 -7.27 16 7 C -0.37 -19.81 9.11 84.07 0.77 -19.05 16 8 H 0.10 5.65 7.59 -2.91 -0.02 5.63 16 9 N -0.35 -18.50 2.75 -479.70 -1.32 -19.82 16 10 C 0.36 17.23 10.28 180.10 1.85 19.08 16 11 N -0.54 -24.35 10.43 -188.67 -1.97 -26.32 16 12 C 0.16 6.95 6.96 40.45 0.28 7.23 16 13 C -0.08 -2.61 5.50 -19.83 -0.11 -2.71 16 14 C -0.01 -0.18 5.61 -20.05 -0.11 -0.30 16 15 C -0.09 -2.62 9.63 22.50 0.22 -2.41 16 16 C -0.09 -2.20 9.77 22.25 0.22 -1.98 16 17 C -0.10 -2.18 6.23 22.36 0.14 -2.04 16 18 Br -0.05 -0.91 33.69 -20.37 -0.69 -1.60 16 19 C -0.09 -1.79 9.77 22.25 0.22 -1.57 16 20 C -0.10 -2.28 9.59 22.49 0.22 -2.07 16 21 C -0.18 -4.90 10.40 66.83 0.70 -4.20 16 22 S 0.24 8.04 22.99 -56.49 -1.30 6.74 16 23 C -0.39 -18.03 6.47 23.28 0.15 -17.88 16 24 C 0.49 27.03 7.42 85.05 0.63 27.66 16 25 O -0.61 -36.57 16.95 -5.17 -0.09 -36.65 16 26 H 0.30 12.74 8.31 -92.71 -0.77 11.97 16 27 H 0.21 9.61 6.17 -2.91 -0.02 9.59 16 28 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.22 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -64.92 323.00 3.69 -61.23 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.19 Total: 17.75 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.59 Total: 1.25 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.04 Total: -86.74 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.09 Total: -36.65 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -1.30 Total: 6.74 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.69 Total: -1.60 kcal Total: -64.92 3.69 -61.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064667797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.790 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds