Wall clock time and date at job start Tue Mar 31 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38157 * 120.35050 * 2 1 4 4 C 1.39661 * 118.48312 * 179.97438 * 3 2 1 5 5 N 1.38614 * 120.48811 * 179.97438 * 4 3 2 6 6 C 1.40064 * 119.99726 * 8.58433 * 5 4 3 7 7 C 1.40433 * 125.97079 * 186.34083 * 6 5 4 8 8 C 1.35241 * 107.85812 * 179.82782 * 7 6 5 9 9 C 1.50700 * 126.06441 * 180.15873 * 8 7 6 10 10 C 1.53004 * 117.49702 * 214.09062 * 9 8 7 11 11 C 1.53001 * 117.50214 * 145.42912 * 9 8 7 12 12 N 1.34965 * 107.86850 * 0.42471 * 8 7 6 13 13 H 0.96999 * 125.97339 * 179.76551 * 12 8 7 14 14 N 1.31233 * 125.97837 * 6.64031 * 6 5 4 15 15 N 1.32931 * 119.02568 * 0.02562 * 4 3 2 16 16 C 1.32442 * 120.61609 * 0.02562 * 15 4 3 17 17 N 1.38520 * 119.17877 * 179.97438 * 16 15 4 18 18 C 1.39003 * 119.99965 * 354.63288 * 17 16 15 19 19 C 1.39557 * 119.83905 * 325.65581 * 18 17 16 20 20 C 1.36339 * 120.16018 * 180.22706 * 19 18 17 21 21 C 1.40885 * 119.83693 * 359.50647 * 20 19 18 22 22 C 1.41127 * 120.16179 * 180.25049 * 21 20 19 23 23 H 1.07999 * 120.00002 * 213.62055 * 22 21 20 24 24 C 1.39869 * 119.99635 * 33.61562 * 22 21 20 25 25 N 1.30897 * 120.00151 * 6.21223 * 24 22 21 26 26 Si 1.86803 * 119.99802 * 186.21206 * 24 22 21 27 27 H 1.48500 * 109.47004 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46947 * 119.99871 * 26 24 22 29 29 H 1.48499 * 109.47139 * 240.00365 * 26 24 22 30 30 C 1.40891 * 119.68292 * 0.49049 * 21 20 19 31 31 C 1.36339 * 119.83712 * 359.75725 * 30 21 20 32 32 N 1.32474 * 120.35549 * 180.25586 * 2 1 3 33 33 H 1.08997 * 109.47162 * 90.00142 * 1 2 3 34 34 H 1.09008 * 109.46540 * 209.99863 * 1 2 3 35 35 H 1.08994 * 109.47066 * 329.99837 * 1 2 3 36 36 H 1.07997 * 120.75895 * 359.97438 * 3 2 1 37 37 H 0.96997 * 119.99978 * 188.58201 * 5 4 3 38 38 H 1.07994 * 126.07112 * 359.97438 * 7 6 5 39 39 H 1.09001 * 115.55411 * 359.75210 * 9 8 7 40 40 H 1.08995 * 117.50301 * 359.97438 * 10 9 8 41 41 H 1.09003 * 117.49743 * 145.02027 * 10 9 8 42 42 H 1.08997 * 117.50221 * 214.97546 * 11 9 8 43 43 H 1.08999 * 117.49455 * 359.97438 * 11 9 8 44 44 H 0.96994 * 120.00079 * 174.64285 * 17 16 15 45 45 H 1.08003 * 119.91791 * 359.95843 * 19 18 17 46 46 H 1.07999 * 120.07728 * 179.74570 * 20 19 18 47 47 H 0.97005 * 119.99952 * 180.02562 * 25 24 22 48 48 H 1.08002 * 120.08382 * 179.73736 * 30 21 20 49 49 H 1.07993 * 119.92336 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1922 0.0000 4 6 3.6010 1.1467 0.0005 5 7 4.3428 2.3177 0.0000 6 6 3.7043 3.5512 0.1800 7 6 4.3078 4.8151 0.0776 8 6 3.3586 5.7485 0.3161 9 6 3.5607 7.2418 0.3068 10 6 2.7383 8.0722 1.2943 11 6 2.4055 8.1079 -0.1995 12 7 2.1997 5.1051 0.5699 13 1 1.3495 5.5232 0.7780 14 7 2.4388 3.7279 0.4793 15 7 4.2078 -0.0360 0.0005 16 6 3.5015 -1.1564 -0.0005 17 7 4.1645 -2.3727 -0.0010 18 6 5.5496 -2.4092 -0.1131 19 6 6.2082 -1.4593 -0.8951 20 6 7.5661 -1.4918 -1.0133 21 6 8.3052 -2.4811 -0.3352 22 6 9.7115 -2.5179 -0.4485 23 1 10.2299 -3.4652 -0.4329 24 6 10.4337 -1.3275 -0.5812 25 7 9.8210 -0.1753 -0.4784 26 14 12.2727 -1.3819 -0.9049 27 1 12.7208 -2.7958 -0.9780 28 1 12.5691 -0.7020 -2.1913 29 1 12.9899 -0.6912 0.1968 30 6 7.6334 -3.4367 0.4525 31 6 6.2747 -3.3951 0.5574 32 7 2.1765 -1.1431 -0.0051 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5139 35 1 -0.3633 0.8899 0.5138 36 1 1.6834 2.1378 -0.0004 37 1 5.3041 2.2827 -0.1249 38 1 5.3451 5.0076 -0.1532 39 1 4.5745 7.5778 0.0890 40 1 2.0508 7.5384 1.9504 41 1 3.2109 8.9546 1.7257 42 1 2.6592 9.0138 -0.7500 43 1 1.4995 7.5975 -0.5261 44 1 3.6623 -3.1988 0.0766 45 1 5.6405 -0.6993 -1.4114 46 1 8.0741 -0.7586 -1.6222 47 1 10.3219 0.6503 -0.5708 48 1 8.1933 -4.2006 0.9717 49 1 5.7583 -4.1271 1.1605 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064746727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:58 Heat of formation + Delta-G solvation = 200.283051 kcal Electronic energy + Delta-G solvation = -32567.915798 eV Core-core repulsion = 28305.021370 eV Total energy + Delta-G solvation = -4262.894428 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.171 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.66003 -40.54233 -38.06686 -37.63756 -36.24236 -35.21169 -33.41721 -32.76390 -31.00471 -30.28551 -29.84444 -29.45470 -28.56563 -27.75935 -24.88635 -24.11264 -23.29189 -22.95031 -22.07795 -21.14441 -20.85401 -20.28531 -19.98084 -18.29990 -17.67738 -17.24825 -16.87234 -16.17092 -15.86538 -15.44472 -15.31355 -15.18220 -14.98081 -14.86403 -14.68608 -14.12717 -13.84680 -13.56706 -13.33481 -13.08926 -12.95901 -12.63714 -12.54607 -12.35644 -12.17575 -12.13605 -12.01397 -11.73176 -11.53396 -11.27549 -11.15242 -11.08450 -10.94199 -10.85031 -10.52565 -10.11008 -10.01474 -9.88559 -9.67576 -9.35897 -9.15865 -8.80353 -8.62274 -8.24572 -7.77340 -7.46847 -6.68301 -6.58704 -4.24891 1.43332 1.66383 1.74298 2.31696 2.74370 2.85563 3.04167 3.11227 3.12943 3.16910 3.22828 3.42950 3.63620 3.98921 4.00653 4.24521 4.39640 4.41259 4.57903 4.65322 4.72224 4.77255 5.06184 5.06727 5.28323 5.37190 5.42251 5.44337 5.49871 5.57206 5.64329 5.71658 5.71831 5.81273 5.96161 6.07782 6.17999 6.22881 6.41624 6.65498 6.87733 6.90971 7.02131 7.10670 7.14787 7.22312 7.29098 7.40309 7.62881 7.66331 7.77394 7.89228 8.11862 8.17371 8.26136 8.37564 8.69334 8.95587 8.96431 9.08034 10.33407 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.002473 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.824043 B =11319.531471 C =14824.043009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.225 3.775 3 C -0.335 4.335 4 C 0.453 3.547 5 N -0.614 5.614 6 C 0.338 3.662 7 C -0.280 4.280 8 C 0.144 3.856 9 C -0.097 4.097 10 C -0.171 4.171 11 C -0.171 4.171 12 N -0.476 5.476 13 H 0.436 0.564 14 N -0.318 5.318 15 N -0.585 5.585 16 C 0.593 3.407 17 N -0.618 5.618 18 C 0.025 3.975 19 C -0.084 4.084 20 C -0.141 4.141 21 C 0.103 3.897 22 C -0.464 4.464 23 H 0.075 0.925 24 C 0.072 3.928 25 N -0.806 5.806 26 Si 0.910 3.090 27 H -0.263 1.263 28 H -0.274 1.274 29 H -0.276 1.276 30 C -0.203 4.203 31 C -0.113 4.113 32 N -0.603 5.603 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.431 0.569 38 H 0.154 0.846 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.410 0.590 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.276 0.724 48 H 0.096 0.904 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 16.452 0.741 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 C -0.366 4.366 4 C 0.209 3.791 5 N -0.245 5.245 6 C 0.080 3.920 7 C -0.312 4.312 8 C 0.015 3.985 9 C -0.117 4.117 10 C -0.209 4.209 11 C -0.208 4.208 12 N -0.185 5.185 13 H 0.280 0.720 14 N -0.149 5.149 15 N -0.316 5.316 16 C 0.236 3.764 17 N -0.244 5.244 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.161 4.161 21 C 0.100 3.900 22 C -0.495 4.495 23 H 0.093 0.907 24 C -0.144 4.144 25 N -0.433 5.433 26 Si 0.735 3.265 27 H -0.186 1.186 28 H -0.200 1.200 29 H -0.201 1.201 30 C -0.223 4.223 31 C -0.134 4.134 32 N -0.330 5.330 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.187 0.813 37 H 0.271 0.729 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.247 0.753 45 H 0.119 0.881 46 H 0.137 0.863 47 H 0.087 0.913 48 H 0.114 0.886 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.038 15.279 0.970 22.173 hybrid contribution 1.191 1.110 -0.038 1.629 sum -14.847 16.390 0.932 22.134 Atomic orbital electron populations 1.20658 0.88608 1.03267 1.02966 1.20998 0.96386 0.86959 0.87768 1.22506 0.93466 1.01829 1.18786 1.18111 0.88005 0.85311 0.87667 1.41048 1.10163 0.99290 1.74031 1.18961 0.90932 0.85691 0.96389 1.20714 1.01511 0.88855 1.20084 1.19921 0.86786 0.93115 0.98720 1.20698 0.98791 0.85934 1.06303 1.23100 1.02899 1.02269 0.92587 1.23097 0.98777 1.01905 0.97036 1.45968 1.09960 1.04021 1.58537 0.72007 1.77460 1.14570 0.91406 1.31495 1.67535 1.39778 0.96398 1.27841 1.18845 0.84152 0.85846 0.87533 1.41167 1.05434 1.03185 1.74597 1.17167 0.79771 1.03018 1.06840 1.20417 0.94783 0.97384 0.97853 1.20972 0.91511 1.01665 1.01954 1.17671 0.93409 0.90425 0.88449 1.19487 0.91764 0.93454 1.44765 0.90654 1.25840 1.00752 0.95077 0.92697 1.69829 1.37705 0.98326 1.37440 0.86242 0.82395 0.79374 0.78515 1.18640 1.19969 1.20130 1.20637 0.92756 1.04095 1.04814 1.20062 0.94343 0.99090 0.99917 1.67671 1.07258 1.30753 1.27313 0.90326 0.90487 0.90567 0.81281 0.72900 0.82844 0.84841 0.88629 0.87525 0.87538 0.88614 0.75328 0.88055 0.86338 0.91277 0.88598 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.21 36.01 0.37 -0.73 16 2 C 0.22 3.63 6.81 -82.34 -0.56 3.07 16 3 C -0.34 -5.56 8.84 -39.08 -0.35 -5.90 16 4 C 0.45 8.30 7.67 -154.74 -1.19 7.11 16 5 N -0.61 -9.77 5.60 -11.11 -0.06 -9.83 16 6 C 0.34 4.74 7.74 -154.46 -1.20 3.54 16 7 C -0.28 -3.18 10.74 -39.82 -0.43 -3.61 16 8 C 0.14 1.32 6.62 -82.28 -0.55 0.77 16 9 C -0.10 -0.58 6.25 -91.77 -0.57 -1.16 16 10 C -0.17 -0.76 10.22 -26.69 -0.27 -1.03 16 11 C -0.17 -0.74 10.22 -26.69 -0.27 -1.01 16 12 N -0.48 -4.49 7.30 33.47 0.24 -4.24 16 13 H 0.44 2.75 8.96 -182.62 -1.64 1.11 16 14 N -0.32 -4.21 9.09 31.43 0.29 -3.93 16 15 N -0.59 -12.20 7.14 -13.11 -0.09 -12.29 16 16 C 0.59 12.13 8.15 -322.69 -2.63 9.50 16 17 N -0.62 -12.43 5.45 -11.52 -0.06 -12.49 16 18 C 0.03 0.58 6.27 -83.63 -0.52 0.06 16 19 C -0.08 -2.04 8.46 -39.77 -0.34 -2.38 16 20 C -0.14 -3.69 8.57 -39.26 -0.34 -4.03 16 21 C 0.10 2.75 5.51 -106.80 -0.59 2.16 16 22 C -0.46 -12.34 9.03 -37.88 -0.34 -12.68 16 23 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 24 C 0.07 1.82 5.30 -17.34 -0.09 1.73 16 25 N -0.81 -20.98 10.94 55.54 0.61 -20.37 16 26 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 30 C -0.20 -4.97 9.74 -39.26 -0.38 -5.35 16 31 C -0.11 -2.56 9.90 -39.77 -0.39 -2.95 16 32 N -0.60 -11.13 10.39 -10.20 -0.11 -11.24 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.17 2.58 4.86 -52.49 -0.25 2.32 16 37 H 0.43 6.67 8.95 -40.82 -0.37 6.31 16 38 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.41 7.18 8.93 -40.82 -0.36 6.81 16 45 H 0.10 2.44 6.31 -52.48 -0.33 2.10 16 46 H 0.12 3.21 6.43 -52.49 -0.34 2.87 16 47 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 48 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 49 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -31.88 412.89 -16.11 -48.00 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -7.48 Total: 19.13 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -10.64 Total: -12.89 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: 0.81 Total: -74.39 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.88 -16.11 -48.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064746727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.280 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 216.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -16.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds