Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38157 * 120.35050 * 2 1 4 4 C 1.39661 * 118.48312 * 179.97438 * 3 2 1 5 5 N 1.38614 * 120.48811 * 179.97438 * 4 3 2 6 6 C 1.40064 * 119.99726 * 8.58433 * 5 4 3 7 7 C 1.40433 * 125.97079 * 186.34083 * 6 5 4 8 8 C 1.35241 * 107.85812 * 179.82782 * 7 6 5 9 9 C 1.50700 * 126.06441 * 180.15873 * 8 7 6 10 10 C 1.53004 * 117.49702 * 214.09062 * 9 8 7 11 11 C 1.53001 * 117.50214 * 145.42912 * 9 8 7 12 12 N 1.34965 * 107.86850 * 0.42471 * 8 7 6 13 13 H 0.96999 * 125.97339 * 179.76551 * 12 8 7 14 14 N 1.31233 * 125.97837 * 6.64031 * 6 5 4 15 15 N 1.32931 * 119.02568 * 0.02562 * 4 3 2 16 16 C 1.32442 * 120.61609 * 0.02562 * 15 4 3 17 17 N 1.38520 * 119.17877 * 179.97438 * 16 15 4 18 18 C 1.39003 * 119.99965 * 354.63288 * 17 16 15 19 19 C 1.39557 * 119.83905 * 325.65581 * 18 17 16 20 20 C 1.36339 * 120.16018 * 180.22706 * 19 18 17 21 21 C 1.40885 * 119.83693 * 359.50647 * 20 19 18 22 22 C 1.41127 * 120.16179 * 180.25049 * 21 20 19 23 23 H 1.07999 * 120.00002 * 213.62055 * 22 21 20 24 24 C 1.39869 * 119.99635 * 33.61562 * 22 21 20 25 25 N 1.30897 * 120.00151 * 6.21223 * 24 22 21 26 26 Si 1.86803 * 119.99802 * 186.21206 * 24 22 21 27 27 H 1.48500 * 109.47004 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46947 * 119.99871 * 26 24 22 29 29 H 1.48499 * 109.47139 * 240.00365 * 26 24 22 30 30 C 1.40891 * 119.68292 * 0.49049 * 21 20 19 31 31 C 1.36339 * 119.83712 * 359.75725 * 30 21 20 32 32 N 1.32474 * 120.35549 * 180.25586 * 2 1 3 33 33 H 1.08997 * 109.47162 * 90.00142 * 1 2 3 34 34 H 1.09008 * 109.46540 * 209.99863 * 1 2 3 35 35 H 1.08994 * 109.47066 * 329.99837 * 1 2 3 36 36 H 1.07997 * 120.75895 * 359.97438 * 3 2 1 37 37 H 0.96997 * 119.99978 * 188.58201 * 5 4 3 38 38 H 1.07994 * 126.07112 * 359.97438 * 7 6 5 39 39 H 1.09001 * 115.55411 * 359.75210 * 9 8 7 40 40 H 1.08995 * 117.50301 * 359.97438 * 10 9 8 41 41 H 1.09003 * 117.49743 * 145.02027 * 10 9 8 42 42 H 1.08997 * 117.50221 * 214.97546 * 11 9 8 43 43 H 1.08999 * 117.49455 * 359.97438 * 11 9 8 44 44 H 0.96994 * 120.00079 * 174.64285 * 17 16 15 45 45 H 1.08003 * 119.91791 * 359.95843 * 19 18 17 46 46 H 1.07999 * 120.07728 * 179.74570 * 20 19 18 47 47 H 0.97005 * 119.99952 * 180.02562 * 25 24 22 48 48 H 1.08002 * 120.08382 * 179.73736 * 30 21 20 49 49 H 1.07993 * 119.92336 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2052 1.1922 0.0000 4 6 3.6010 1.1467 0.0005 5 7 4.3428 2.3177 0.0000 6 6 3.7043 3.5512 0.1800 7 6 4.3078 4.8151 0.0776 8 6 3.3586 5.7485 0.3161 9 6 3.5607 7.2418 0.3068 10 6 2.7383 8.0722 1.2943 11 6 2.4055 8.1079 -0.1995 12 7 2.1997 5.1051 0.5699 13 1 1.3495 5.5232 0.7780 14 7 2.4388 3.7279 0.4793 15 7 4.2078 -0.0360 0.0005 16 6 3.5015 -1.1564 -0.0005 17 7 4.1645 -2.3727 -0.0010 18 6 5.5496 -2.4092 -0.1131 19 6 6.2082 -1.4593 -0.8951 20 6 7.5661 -1.4918 -1.0133 21 6 8.3052 -2.4811 -0.3352 22 6 9.7115 -2.5179 -0.4485 23 1 10.2299 -3.4652 -0.4329 24 6 10.4337 -1.3275 -0.5812 25 7 9.8210 -0.1753 -0.4784 26 14 12.2727 -1.3819 -0.9049 27 1 12.7208 -2.7958 -0.9780 28 1 12.5691 -0.7020 -2.1913 29 1 12.9899 -0.6912 0.1968 30 6 7.6334 -3.4367 0.4525 31 6 6.2747 -3.3951 0.5574 32 7 2.1765 -1.1431 -0.0051 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5139 35 1 -0.3633 0.8899 0.5138 36 1 1.6834 2.1378 -0.0004 37 1 5.3041 2.2827 -0.1249 38 1 5.3451 5.0076 -0.1532 39 1 4.5745 7.5778 0.0890 40 1 2.0508 7.5384 1.9504 41 1 3.2109 8.9546 1.7257 42 1 2.6592 9.0138 -0.7500 43 1 1.4995 7.5975 -0.5261 44 1 3.6623 -3.1988 0.0766 45 1 5.6405 -0.6993 -1.4114 46 1 8.0741 -0.7586 -1.6222 47 1 10.3219 0.6503 -0.5708 48 1 8.1933 -4.2006 0.9717 49 1 5.7583 -4.1271 1.1605 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064746727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = 186.322501 kcal Electronic energy + Delta-G solvation = -32568.521173 eV Core-core repulsion = 28305.021370 eV Total energy + Delta-G solvation = -4263.499803 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.171 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.60788 -41.89247 -39.79412 -38.39330 -37.38082 -36.75493 -35.09039 -34.23692 -32.33715 -31.44287 -31.17769 -30.86781 -30.30680 -28.93272 -26.71553 -25.05310 -24.49843 -23.45416 -23.26860 -22.89669 -22.11460 -21.59914 -21.13037 -19.60858 -19.18710 -18.50579 -18.27131 -17.52565 -16.98671 -16.87868 -16.61274 -16.30642 -16.27719 -16.09759 -15.85062 -15.62882 -15.04759 -14.84081 -14.53517 -14.31608 -14.18653 -14.11532 -13.84138 -13.77088 -13.48016 -13.24713 -13.08993 -13.05833 -12.81616 -12.60180 -12.44874 -12.35247 -12.14537 -11.96543 -11.71964 -11.54846 -11.40413 -11.28575 -11.12390 -11.00196 -10.91295 -10.08006 -9.80615 -9.62950 -9.38849 -9.03320 -8.53364 -8.40485 -6.23047 0.19616 0.26329 0.81061 1.03533 1.17775 1.29160 1.40771 1.51330 1.55392 1.76397 2.00086 2.23834 2.26603 2.80255 3.00825 3.05119 3.35608 3.40906 3.63836 3.75680 3.81397 3.83519 4.04005 4.11057 4.19197 4.44415 4.47025 4.50535 4.51782 4.66011 4.75503 4.76598 4.79925 4.91907 4.96900 5.02431 5.06303 5.14760 5.15155 5.20487 5.21124 5.22051 5.39108 5.49450 5.59974 5.69571 5.76471 5.90299 5.96191 6.15680 6.23123 6.39260 6.42685 6.50158 6.68857 6.73839 6.81214 7.00585 7.07603 7.53852 8.46924 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.002473 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.824043 B =11319.531471 C =14824.043009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.218 3.782 3 C -0.331 4.331 4 C 0.437 3.563 5 N -0.617 5.617 6 C 0.314 3.686 7 C -0.303 4.303 8 C 0.164 3.836 9 C -0.116 4.116 10 C -0.162 4.162 11 C -0.159 4.159 12 N -0.460 5.460 13 H 0.451 0.549 14 N -0.340 5.340 15 N -0.620 5.620 16 C 0.577 3.423 17 N -0.618 5.618 18 C 0.041 3.959 19 C -0.089 4.089 20 C -0.157 4.157 21 C 0.070 3.930 22 C -0.498 4.498 23 H 0.075 0.925 24 C 0.028 3.972 25 N -0.839 5.839 26 Si 0.984 3.016 27 H -0.259 1.259 28 H -0.267 1.267 29 H -0.269 1.269 30 C -0.211 4.211 31 C -0.113 4.113 32 N -0.605 5.605 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.185 0.815 37 H 0.427 0.573 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.422 0.578 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.283 0.717 48 H 0.108 0.892 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 18.270 1.259 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.361 4.361 4 C 0.194 3.806 5 N -0.247 5.247 6 C 0.058 3.942 7 C -0.334 4.334 8 C 0.033 3.967 9 C -0.136 4.136 10 C -0.200 4.200 11 C -0.197 4.197 12 N -0.171 5.171 13 H 0.298 0.702 14 N -0.172 5.172 15 N -0.352 5.352 16 C 0.219 3.781 17 N -0.247 5.247 18 C -0.054 4.054 19 C -0.109 4.109 20 C -0.177 4.177 21 C 0.068 3.932 22 C -0.529 4.529 23 H 0.093 0.907 24 C -0.184 4.184 25 N -0.467 5.467 26 Si 0.805 3.195 27 H -0.182 1.182 28 H -0.192 1.192 29 H -0.194 1.194 30 C -0.231 4.231 31 C -0.133 4.133 32 N -0.333 5.333 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.202 0.798 37 H 0.267 0.733 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.261 0.739 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.991 17.146 1.498 24.897 hybrid contribution 1.503 0.755 -0.158 1.690 sum -16.487 17.901 1.340 24.374 Atomic orbital electron populations 1.20794 0.84797 1.04766 1.04551 1.21863 0.98675 0.86085 0.86092 1.22791 0.92751 1.02844 1.17746 1.18479 0.89097 0.85236 0.87755 1.41097 1.10034 0.99613 1.73955 1.19170 0.91702 0.85507 0.97803 1.20941 1.02627 0.88345 1.21534 1.20315 0.85742 0.94504 0.96093 1.20829 1.00178 0.83842 1.08764 1.23209 1.02035 1.01996 0.92718 1.23208 0.97694 1.01633 0.97153 1.45919 1.10877 1.02826 1.57471 0.70192 1.77235 1.14345 0.93651 1.31965 1.67463 1.41061 0.97430 1.29255 1.19045 0.85074 0.85744 0.88207 1.40987 1.04308 1.03966 1.75454 1.17208 0.81215 1.01870 1.05088 1.20412 0.94176 0.97988 0.98354 1.20846 0.92249 1.01897 1.02722 1.17994 0.94108 0.91505 0.89615 1.19718 0.92195 0.94132 1.46839 0.90661 1.26707 1.05503 0.94303 0.91880 1.69911 1.39664 0.99041 1.38040 0.85128 0.76259 0.79483 0.78591 1.18209 1.19174 1.19397 1.20850 0.93780 1.03890 1.04552 1.20347 0.93808 0.99521 0.99666 1.67776 1.06176 1.31768 1.27586 0.88460 0.89697 0.88339 0.79807 0.73345 0.82100 0.83912 0.88431 0.86193 0.86135 0.88304 0.73893 0.88377 0.88338 0.90678 0.87407 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 10.21 71.24 0.73 -1.09 16 2 C 0.22 6.76 6.81 42.44 0.29 7.05 16 3 C -0.33 -10.85 8.84 22.59 0.20 -10.65 16 4 C 0.44 16.47 7.67 133.16 1.02 17.49 16 5 N -0.62 -20.58 5.60 -189.07 -1.06 -21.64 16 6 C 0.31 8.93 7.74 133.36 1.03 9.96 16 7 C -0.30 -6.88 10.74 22.11 0.24 -6.64 16 8 C 0.16 2.77 6.62 41.39 0.27 3.05 16 9 C -0.12 -1.12 6.25 -11.54 -0.07 -1.19 16 10 C -0.16 -0.95 10.22 30.62 0.31 -0.64 16 11 C -0.16 -0.89 10.22 30.62 0.31 -0.58 16 12 N -0.46 -7.91 7.30 -48.04 -0.35 -8.26 16 13 H 0.45 4.61 8.96 -213.34 -1.91 2.70 16 14 N -0.34 -8.77 9.09 -54.49 -0.50 -9.26 16 15 N -0.62 -26.72 7.14 -195.38 -1.40 -28.12 16 16 C 0.58 23.82 8.15 261.45 2.13 25.95 16 17 N -0.62 -24.92 5.45 -190.35 -1.04 -25.96 16 18 C 0.04 1.88 6.27 38.64 0.24 2.13 16 19 C -0.09 -4.51 8.46 22.15 0.19 -4.32 16 20 C -0.16 -8.68 8.57 22.47 0.19 -8.49 16 21 C 0.07 3.91 5.51 -21.27 -0.12 3.79 16 22 C -0.50 -27.50 9.03 23.37 0.21 -27.29 16 23 H 0.08 3.99 7.85 -2.91 -0.02 3.97 16 24 C 0.03 1.47 5.30 85.23 0.45 1.93 16 25 N -0.84 -45.49 10.94 21.82 0.24 -45.25 16 26 Si 0.98 39.65 29.56 68.60 2.03 41.68 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 29 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 30 C -0.21 -10.50 9.74 22.48 0.22 -10.28 16 31 C -0.11 -5.07 9.90 22.14 0.22 -4.85 16 32 N -0.61 -22.00 10.39 -186.18 -1.94 -23.93 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.19 5.41 4.86 -2.92 -0.01 5.40 16 37 H 0.43 14.34 8.95 -92.71 -0.83 13.51 16 38 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 44 H 0.42 14.50 8.93 -92.71 -0.83 13.68 16 45 H 0.10 4.99 6.31 -2.91 -0.02 4.97 16 46 H 0.10 5.73 6.43 -2.91 -0.02 5.71 16 47 H 0.28 13.93 8.30 -92.70 -0.77 13.16 16 48 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 49 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -72.22 412.89 1.55 -70.67 By element: Atomic # 1 Polarization: 57.26 SS G_CDS: -2.52 Total: 54.74 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 8.07 Total: -4.67 kcal Atomic # 7 Polarization: -156.39 SS G_CDS: -6.03 Total: -162.42 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -72.22 1.55 -70.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064746727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.992 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds