Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30802 * 126.24962 * 2 1 4 4 N 1.28681 * 110.29002 * 179.76797 * 3 2 1 5 5 C 1.32299 * 109.48321 * 0.41473 * 4 3 2 6 6 C 1.40816 * 133.46614 * 179.88503 * 5 4 3 7 7 C 1.36025 * 119.22804 * 179.67908 * 6 5 4 8 8 C 1.40542 * 119.74631 * 0.02562 * 7 6 5 9 9 S 1.76201 * 119.81607 * 179.97438 * 8 7 6 10 10 O 1.42109 * 106.40181 * 203.54138 * 9 8 7 11 11 O 1.42098 * 106.40430 * 336.45813 * 9 8 7 12 12 N 1.65597 * 107.22031 * 90.00152 * 9 8 7 13 13 C 1.36854 * 120.00214 * 84.67220 * 12 9 8 14 14 H 1.08000 * 119.99941 * 339.75548 * 13 12 9 15 15 C 1.38789 * 119.99903 * 159.74948 * 13 12 9 16 16 N 1.31598 * 120.00420 * 341.53336 * 15 13 12 17 17 Si 1.86801 * 119.99803 * 161.53220 * 15 13 12 18 18 H 1.48508 * 109.47108 * 90.00486 * 17 15 13 19 19 H 1.48500 * 109.47145 * 210.00051 * 17 15 13 20 20 H 1.48492 * 109.47249 * 329.99951 * 17 15 13 21 21 C 1.39297 * 119.99667 * 264.67988 * 12 9 8 22 22 C 1.39118 * 120.07641 * 118.16092 * 21 12 9 23 23 C 1.38041 * 119.95873 * 179.76363 * 22 21 12 24 24 C 1.38313 * 120.11410 * 0.50629 * 23 22 21 25 25 C 1.38539 * 120.15714 * 359.74577 * 24 23 22 26 26 F 1.35095 * 119.98398 * 180.02562 * 25 24 23 27 27 C 1.38297 * 120.03352 * 359.97438 * 25 24 23 28 28 C 1.34954 * 120.37096 * 0.02562 * 8 7 6 29 29 N 1.36062 * 126.24229 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46764 * 269.98066 * 1 2 3 31 31 H 1.08998 * 109.46694 * 29.97691 * 1 2 3 32 32 H 1.08995 * 109.47304 * 149.98086 * 1 2 3 33 33 H 1.08002 * 120.38934 * 359.70715 * 6 5 4 34 34 H 1.08005 * 120.12487 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99890 * 185.04675 * 16 15 13 36 36 H 1.07998 * 120.01947 * 0.02562 * 22 21 12 37 37 H 1.08002 * 119.94300 * 180.24696 * 23 22 21 38 38 H 1.08002 * 119.92398 * 179.75906 * 24 23 22 39 39 H 1.07996 * 120.05514 * 180.02562 * 27 25 24 40 40 H 1.07993 * 119.74976 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2805 1.0549 0.0000 4 7 3.5177 0.7010 0.0049 5 6 3.5991 -0.6194 -0.0007 6 6 4.6787 -1.5235 -0.0012 7 6 4.4258 -2.8600 -0.0013 8 6 3.0972 -3.3183 -0.0015 9 16 2.7676 -5.0492 -0.0023 10 8 1.4647 -5.2093 -0.5468 11 8 3.9201 -5.6770 -0.5471 12 7 2.6759 -5.5316 1.5792 13 6 1.4985 -5.4069 2.2655 14 1 0.7412 -4.7197 1.9182 15 6 1.2776 -6.1637 3.4077 16 7 2.0021 -7.2384 3.6354 17 14 -0.0483 -5.6567 4.6220 18 1 -1.3338 -6.2995 4.2483 19 1 0.3414 -6.0871 5.9888 20 1 -0.2066 -4.1805 4.5944 21 6 3.7973 -6.0641 2.2110 22 6 4.3438 -5.4233 3.3183 23 6 5.4522 -5.9558 3.9455 24 6 6.0270 -7.1199 3.4687 25 6 5.4899 -7.7592 2.3631 26 9 6.0539 -8.8963 1.9006 27 6 4.3761 -7.2344 1.7334 28 6 2.0725 -2.4402 -0.0020 29 7 2.3115 -1.0974 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 5.6957 -1.1600 -0.0011 34 1 5.2429 -3.5663 -0.0013 35 1 1.8000 -7.8077 4.3943 36 1 3.8985 -4.5121 3.6896 37 1 5.8738 -5.4603 4.8076 38 1 6.8965 -7.5318 3.9594 39 1 3.9569 -7.7326 0.8718 40 1 1.0555 -2.8034 -0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065199111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = 22.648650 kcal Electronic energy + Delta-G solvation = -32561.729039 eV Core-core repulsion = 27999.156511 eV Total energy + Delta-G solvation = -4562.572527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.079 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -49.69338 -44.84461 -40.14236 -39.49430 -38.33363 -36.92951 -36.84274 -35.59266 -33.45775 -33.12001 -31.94572 -31.29624 -30.23519 -28.57767 -26.56601 -25.87849 -24.73053 -23.67923 -23.15961 -22.80355 -20.72025 -20.01109 -19.54443 -18.94983 -18.45762 -18.14510 -17.94075 -17.44833 -16.95251 -16.83196 -16.47441 -16.34615 -16.23102 -16.11223 -15.58184 -15.30901 -14.79979 -14.49828 -14.36520 -14.24733 -13.96288 -13.77947 -13.61332 -13.39675 -13.28207 -13.19159 -13.18212 -12.97270 -12.90249 -12.72549 -12.66462 -12.55149 -12.40671 -12.30618 -12.10933 -11.85453 -11.77667 -11.45570 -11.06945 -10.33249 -9.53355 -9.36477 -9.14887 -8.07842 -5.92516 -0.95201 -0.67996 -0.32395 0.55086 0.64185 0.97544 1.29410 1.49431 1.52989 1.59742 1.86940 2.16223 2.49916 2.66640 2.74355 2.89680 3.08950 3.18696 3.21147 3.44009 3.51301 3.56768 3.59198 3.97672 4.12194 4.22281 4.25972 4.48447 4.55510 4.57143 4.62592 4.67297 4.72098 4.74911 4.78967 4.92532 5.13712 5.20430 5.35009 5.40285 5.48386 5.58850 5.62182 5.88722 6.18010 6.58876 6.95363 7.19525 7.33986 8.86868 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.004172 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.583611 B = 6710.341987 C = 7960.548838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.158 3.842 3 N -0.281 5.281 4 N -0.321 5.321 5 C 0.200 3.800 6 C -0.088 4.088 7 C -0.024 4.024 8 C -0.685 4.685 9 S 2.689 3.311 10 O -0.972 6.972 11 O -0.973 6.973 12 N -0.814 5.814 13 C -0.359 4.359 14 H 0.114 0.886 15 C 0.018 3.982 16 N -0.879 5.879 17 Si 0.965 3.035 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.257 1.257 21 C 0.242 3.758 22 C -0.129 4.129 23 C -0.080 4.080 24 C -0.171 4.171 25 C 0.087 3.913 26 F -0.154 7.154 27 C -0.156 4.156 28 C 0.209 3.791 29 N -0.408 5.408 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.193 0.807 34 H 0.176 0.824 35 H 0.267 0.733 36 H 0.124 0.876 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.103 0.897 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 7.600 -1.248 7.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 N -0.118 5.118 4 N -0.164 5.164 5 C -0.050 4.050 6 C -0.110 4.110 7 C -0.049 4.049 8 C -0.774 4.774 9 S 2.782 3.218 10 O -0.962 6.962 11 O -0.963 6.963 12 N -0.639 5.639 13 C -0.486 4.486 14 H 0.132 0.868 15 C -0.189 4.189 16 N -0.515 5.515 17 Si 0.790 3.210 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.181 1.181 21 C 0.145 3.855 22 C -0.151 4.151 23 C -0.099 4.099 24 C -0.190 4.190 25 C 0.067 3.933 26 F -0.133 7.133 27 C -0.178 4.178 28 C 0.082 3.918 29 N -0.089 5.089 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.210 0.790 34 H 0.193 0.807 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.002 8.713 -1.923 9.144 hybrid contribution -0.965 -1.178 0.718 1.683 sum 1.037 7.535 -1.205 7.701 Atomic orbital electron populations 1.20647 0.79346 1.06850 1.06260 1.25978 0.98833 0.79801 1.05832 1.74150 0.96791 1.24536 1.16354 1.74889 1.11543 1.06741 1.23246 1.22866 0.85960 0.92672 1.03528 1.20599 0.98172 0.89957 1.02262 1.20934 0.94391 0.96467 0.93110 1.31120 1.00932 1.26321 1.19001 1.01944 0.72810 0.74222 0.72827 1.93500 1.39963 1.85530 1.77189 1.93534 1.51854 1.73521 1.77417 1.50596 1.13616 1.71884 1.27755 1.19311 0.93533 1.26137 1.09644 0.86799 1.25723 0.99312 0.94304 0.99528 1.70023 1.40463 1.11802 1.29218 0.85363 0.78389 0.79388 0.77887 1.20632 1.21347 1.18071 1.16768 0.84758 0.90568 0.93381 1.21298 0.96481 1.00817 0.96537 1.21022 0.94744 0.94763 0.99355 1.21149 1.03156 0.97986 0.96713 1.17553 0.94629 0.84497 0.96642 1.91403 1.84373 1.48843 1.88693 1.20977 0.97994 0.96345 1.02490 1.21847 1.02105 0.79295 0.88537 1.44123 1.09444 1.07236 1.48138 0.87391 0.86495 0.87945 0.79008 0.80705 0.92288 0.85803 0.82364 0.82920 0.87899 0.77393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.41 71.24 0.74 -0.34 16 2 C 0.16 4.09 8.14 137.71 1.12 5.21 16 3 N -0.28 -8.84 12.19 -49.68 -0.61 -9.44 16 4 N -0.32 -10.69 12.31 -55.40 -0.68 -11.37 16 5 C 0.20 5.98 7.92 134.07 1.06 7.04 16 6 C -0.09 -2.18 10.11 22.39 0.23 -1.96 16 7 C -0.02 -0.63 9.53 22.32 0.21 -0.42 16 8 C -0.68 -20.44 5.94 22.08 0.13 -20.31 16 9 S 2.69 100.49 5.57 -56.49 -0.31 100.18 16 10 O -0.97 -39.50 16.43 -128.00 -2.10 -41.60 16 11 O -0.97 -38.94 15.04 -128.00 -1.93 -40.87 16 12 N -0.81 -34.02 2.96 -184.31 -0.55 -34.56 16 13 C -0.36 -15.76 8.99 84.04 0.76 -15.00 16 14 H 0.11 4.58 7.78 -2.91 -0.02 4.56 16 15 C 0.02 0.80 4.86 84.86 0.41 1.21 16 16 N -0.88 -42.78 11.09 21.65 0.24 -42.54 16 17 Si 0.96 36.53 29.59 68.60 2.03 38.56 16 18 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.29 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 21 C 0.24 10.05 3.00 38.35 0.12 10.16 16 22 C -0.13 -4.70 8.92 22.43 0.20 -4.50 16 23 C -0.08 -2.45 10.04 22.24 0.22 -2.23 16 24 C -0.17 -5.43 10.02 22.36 0.22 -5.20 16 25 C 0.09 3.34 7.30 22.36 0.16 3.51 16 26 F -0.15 -5.88 17.27 44.97 0.78 -5.10 16 27 C -0.16 -6.74 8.36 22.47 0.19 -6.55 16 28 C 0.21 5.67 10.38 83.23 0.86 6.53 16 29 N -0.41 -11.41 2.95 -342.88 -1.01 -12.42 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.18 4.06 7.66 -2.91 -0.02 4.03 16 35 H 0.27 12.71 8.32 -92.71 -0.77 11.94 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.10 4.74 7.63 -2.91 -0.02 4.72 16 40 H 0.21 4.67 7.52 -2.91 -0.02 4.64 16 Total: -1.00 -65.72 366.18 3.61 -62.12 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.11 Total: 19.90 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 6.64 Total: -22.84 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -2.61 Total: -110.34 kcal Atomic # 8 Polarization: -78.44 SS G_CDS: -4.03 Total: -82.47 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.78 Total: -5.10 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 100.49 SS G_CDS: -0.31 Total: 100.18 kcal Total: -65.72 3.61 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065199111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.767 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds