Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30804 * 126.24972 * 2 1 4 4 N 1.28678 * 110.29660 * 180.02562 * 3 2 1 5 5 C 1.32307 * 109.47997 * 359.97438 * 4 3 2 6 6 C 1.40814 * 133.46776 * 179.97438 * 5 4 3 7 7 C 1.36020 * 119.23201 * 180.02562 * 6 5 4 8 8 C 1.40550 * 119.74374 * 0.25663 * 7 6 5 9 9 S 1.76200 * 119.81523 * 179.74980 * 8 7 6 10 10 O 1.42108 * 106.39755 * 203.53640 * 9 8 7 11 11 O 1.42097 * 106.40310 * 336.45783 * 9 8 7 12 12 N 1.65596 * 107.21891 * 89.99940 * 9 8 7 13 13 C 1.36840 * 120.00058 * 84.69747 * 12 9 8 14 14 H 1.07996 * 120.00362 * 339.64801 * 13 12 9 15 15 C 1.38785 * 119.99959 * 159.64928 * 13 12 9 16 16 N 1.31601 * 119.99579 * 341.50769 * 15 13 12 17 17 Si 1.86798 * 120.00008 * 161.50821 * 15 13 12 18 18 H 1.48496 * 109.47143 * 59.99740 * 17 15 13 19 19 H 1.48499 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46806 * 299.99934 * 17 15 13 21 21 C 1.39375 * 119.99995 * 264.69516 * 12 9 8 22 22 C 1.39067 * 120.06074 * 117.98348 * 21 12 9 23 23 C 1.38042 * 119.93446 * 179.76775 * 22 21 12 24 24 C 1.38537 * 120.05950 * 0.51261 * 23 22 21 25 25 F 1.35104 * 119.93256 * 179.71942 * 24 23 22 26 26 C 1.38537 * 120.12927 * 359.74322 * 24 23 22 27 27 C 1.38032 * 120.06508 * 0.02562 * 26 24 23 28 28 C 1.34959 * 120.36466 * 359.49488 * 8 7 6 29 29 N 1.36063 * 126.24687 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47079 * 269.97864 * 1 2 3 31 31 H 1.08998 * 109.46755 * 29.97838 * 1 2 3 32 32 H 1.09005 * 109.46863 * 149.97510 * 1 2 3 33 33 H 1.08004 * 120.38806 * 0.03045 * 6 5 4 34 34 H 1.07997 * 120.12884 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99525 * 185.05024 * 16 15 13 36 36 H 1.07997 * 120.03414 * 0.02562 * 22 21 12 37 37 H 1.07999 * 119.97136 * 180.25306 * 23 22 21 38 38 H 1.07998 * 119.96120 * 179.97438 * 26 24 23 39 39 H 1.08001 * 120.03497 * 179.97438 * 27 26 24 40 40 H 1.08001 * 119.74438 * 180.26014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0549 0.0000 4 7 3.5177 0.7012 -0.0005 5 6 3.5991 -0.6194 -0.0004 6 6 4.6787 -1.5234 -0.0012 7 6 4.4260 -2.8599 -0.0012 8 6 3.0973 -3.3183 -0.0059 9 16 2.7678 -5.0492 -0.0126 10 8 1.4662 -5.2076 -0.5606 11 8 3.9216 -5.6752 -0.5566 12 7 2.6724 -5.5362 1.5672 13 6 1.4933 -5.4140 2.2509 14 1 0.7373 -4.7250 1.9047 15 6 1.2691 -6.1757 3.3891 16 7 1.9924 -7.2520 3.6136 17 14 -0.0593 -5.6732 4.6025 18 1 -1.3761 -5.6573 3.9163 19 1 -0.0981 -6.6452 5.7246 20 1 0.2400 -4.3180 5.1308 21 6 3.7931 -6.0705 2.2006 22 6 4.3383 -5.4308 3.3084 23 6 5.4454 -5.9649 3.9367 24 6 6.0196 -7.1313 3.4580 25 9 7.1065 -7.6487 4.0715 26 6 5.4817 -7.7678 2.3514 27 6 4.3719 -7.2410 1.7220 28 6 2.0726 -2.4400 -0.0001 29 7 2.3115 -1.0973 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 5.6957 -1.1598 -0.0017 34 1 5.2430 -3.5661 -0.0023 35 1 1.7880 -7.8247 4.3694 36 1 3.8936 -4.5192 3.6795 37 1 5.8669 -5.4707 4.7996 38 1 5.9317 -8.6768 1.9803 39 1 3.9532 -7.7374 0.8591 40 1 1.0556 -2.8033 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065199176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = 37.848213 kcal Electronic energy + Delta-G solvation = -32466.425774 eV Core-core repulsion = 27904.512349 eV Total energy + Delta-G solvation = -4561.913425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.079 amu Computer time = 8.15 seconds Orbital eigenvalues (eV) -48.26661 -43.68426 -38.70776 -38.31203 -36.78330 -35.37356 -35.28027 -34.47728 -32.01748 -31.76905 -30.87040 -30.38731 -28.37805 -27.57163 -24.88678 -24.63912 -23.55231 -22.30270 -21.81627 -21.64841 -19.25754 -18.52530 -17.99360 -17.63019 -17.08930 -16.94565 -16.90060 -16.72355 -15.55741 -15.17103 -15.04735 -14.93157 -14.75567 -14.46486 -14.23591 -13.69039 -13.58098 -13.49973 -12.94282 -12.87315 -12.82937 -12.73979 -12.58478 -12.26330 -11.99888 -11.91758 -11.65351 -11.58229 -11.55190 -11.29905 -11.25900 -11.16351 -10.98603 -10.84049 -10.70363 -10.64035 -10.28442 -9.93531 -9.72398 -8.66841 -8.31295 -8.23507 -7.55762 -6.41581 -4.21691 0.26875 0.71057 0.84624 1.98187 2.05437 2.11508 2.44308 3.04923 3.06029 3.12091 3.13276 3.59581 3.84311 4.07633 4.15592 4.19501 4.27939 4.34978 4.48890 4.65185 4.81234 4.86899 4.96667 5.11508 5.21112 5.22475 5.45985 5.48176 5.50387 5.60105 5.71232 5.83313 5.87101 6.00831 6.06275 6.14821 6.19076 6.58529 6.60818 6.81081 6.83422 6.95849 7.25954 7.31524 7.63059 8.18688 8.36755 8.57255 9.01175 10.53750 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.004102 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.961534 B = 6824.025833 C = 8007.125648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.145 3.855 3 N -0.250 5.250 4 N -0.295 5.295 5 C 0.214 3.786 6 C -0.098 4.098 7 C -0.018 4.018 8 C -0.687 4.687 9 S 2.674 3.326 10 O -0.946 6.946 11 O -0.956 6.956 12 N -0.791 5.791 13 C -0.357 4.357 14 H 0.103 0.897 15 C 0.060 3.940 16 N -0.846 5.846 17 Si 0.911 3.089 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.213 3.787 22 C -0.086 4.086 23 C -0.149 4.149 24 C 0.067 3.933 25 F -0.156 7.156 26 C -0.143 4.143 27 C -0.062 4.062 28 C 0.199 3.801 29 N -0.401 5.401 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.274 0.726 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 5.061 -3.476 6.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 N -0.089 5.089 4 N -0.140 5.140 5 C -0.035 4.035 6 C -0.120 4.120 7 C -0.043 4.043 8 C -0.770 4.770 9 S 2.761 3.239 10 O -0.936 6.936 11 O -0.945 6.945 12 N -0.616 5.616 13 C -0.485 4.485 14 H 0.121 0.879 15 C -0.150 4.150 16 N -0.481 5.481 17 Si 0.737 3.263 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.199 1.199 21 C 0.117 3.883 22 C -0.108 4.108 23 C -0.169 4.169 24 C 0.047 3.953 25 F -0.135 7.135 26 C -0.163 4.163 27 C -0.084 4.084 28 C 0.073 3.927 29 N -0.082 5.082 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.380 6.212 -4.109 7.575 hybrid contribution -0.816 -0.589 1.432 1.751 sum 0.564 5.623 -2.677 6.253 Atomic orbital electron populations 1.20301 0.82752 1.05018 1.04646 1.25030 0.97176 0.80783 1.08738 1.74190 0.96666 1.23420 1.14626 1.74968 1.10804 1.05928 1.22270 1.22462 0.85000 0.92640 1.03441 1.20283 0.97240 0.90788 1.03658 1.20774 0.94860 0.95795 0.92838 1.31979 0.99390 1.29302 1.16352 1.02843 0.73565 0.74023 0.73515 1.93541 1.38617 1.84830 1.76617 1.93553 1.51058 1.72893 1.77032 1.50852 1.13212 1.68153 1.29429 1.18958 0.91472 1.26813 1.11209 0.87893 1.25032 0.97787 0.94389 0.97836 1.69878 1.38958 1.10343 1.28872 0.86262 0.81045 0.78718 0.80313 1.19620 1.20693 1.19882 1.17091 0.85638 0.91961 0.93563 1.20973 0.94065 0.99767 0.96031 1.20726 0.98408 0.96243 1.01501 1.17558 0.86989 0.95604 0.95137 1.91405 1.52688 1.86794 1.82570 1.20701 0.98311 1.01018 0.96248 1.20876 0.94833 0.93013 0.99647 1.21599 1.01470 0.79397 0.90265 1.43982 1.09298 1.07103 1.47777 0.89081 0.88242 0.89846 0.82060 0.82081 0.91533 0.85973 0.86145 0.85748 0.85787 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 135. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.41 36.01 0.37 -0.24 16 2 C 0.14 2.03 8.14 -154.22 -1.25 0.77 16 3 N -0.25 -4.11 12.19 32.94 0.40 -3.71 16 4 N -0.30 -5.10 12.31 31.14 0.38 -4.72 16 5 C 0.21 3.38 7.92 -156.06 -1.24 2.15 16 6 C -0.10 -1.31 10.11 -39.40 -0.40 -1.71 16 7 C -0.02 -0.24 9.53 -39.51 -0.38 -0.62 16 8 C -0.69 -10.55 5.94 -39.88 -0.24 -10.78 16 9 S 2.67 48.61 5.57 -107.50 -0.60 48.02 16 10 O -0.95 -18.84 16.44 -57.17 -0.94 -19.78 16 11 O -0.96 -18.06 15.06 -57.17 -0.86 -18.92 16 12 N -0.79 -16.12 2.96 -9.59 -0.03 -16.15 16 13 C -0.36 -7.80 8.99 -15.11 -0.14 -7.93 16 14 H 0.10 2.10 7.78 -52.49 -0.41 1.69 16 15 C 0.06 1.35 4.87 -17.45 -0.08 1.27 16 16 N -0.85 -20.06 11.09 55.49 0.62 -19.44 16 17 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C 0.21 4.32 3.00 -83.81 -0.25 4.07 16 22 C -0.09 -1.63 8.94 -39.35 -0.35 -1.98 16 23 C -0.15 -2.62 10.02 -39.54 -0.40 -3.02 16 24 C 0.07 1.21 7.30 -39.36 -0.29 0.92 16 25 F -0.16 -2.70 17.26 2.25 0.04 -2.66 16 26 C -0.14 -2.57 10.02 -39.55 -0.40 -2.97 16 27 C -0.06 -1.23 8.37 -39.35 -0.33 -1.56 16 28 C 0.20 2.87 10.38 -16.69 -0.17 2.69 16 29 N -0.40 -5.99 2.95 -59.73 -0.18 -6.17 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.16 1.95 7.66 -52.49 -0.40 1.55 16 35 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 2.43 7.64 -52.49 -0.40 2.03 16 40 H 0.19 2.30 7.53 -52.49 -0.39 1.90 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -29.28 366.24 -9.91 -39.19 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.70 Total: 4.80 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -5.53 Total: -18.95 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 1.20 Total: -50.19 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.80 Total: -38.69 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.60 Total: 48.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.28 -9.91 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065199176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.036 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.15 seconds