Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30804 * 126.24972 * 2 1 4 4 N 1.28678 * 110.29660 * 180.02562 * 3 2 1 5 5 C 1.32307 * 109.47997 * 359.97438 * 4 3 2 6 6 C 1.40814 * 133.46776 * 179.97438 * 5 4 3 7 7 C 1.36020 * 119.23201 * 180.02562 * 6 5 4 8 8 C 1.40550 * 119.74374 * 0.25663 * 7 6 5 9 9 S 1.76200 * 119.81523 * 179.74980 * 8 7 6 10 10 O 1.42108 * 106.39755 * 203.53640 * 9 8 7 11 11 O 1.42097 * 106.40310 * 336.45783 * 9 8 7 12 12 N 1.65596 * 107.21891 * 89.99940 * 9 8 7 13 13 C 1.36840 * 120.00058 * 84.69747 * 12 9 8 14 14 H 1.07996 * 120.00362 * 339.64801 * 13 12 9 15 15 C 1.38785 * 119.99959 * 159.64928 * 13 12 9 16 16 N 1.31601 * 119.99579 * 341.50769 * 15 13 12 17 17 Si 1.86798 * 120.00008 * 161.50821 * 15 13 12 18 18 H 1.48496 * 109.47143 * 59.99740 * 17 15 13 19 19 H 1.48499 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46806 * 299.99934 * 17 15 13 21 21 C 1.39375 * 119.99995 * 264.69516 * 12 9 8 22 22 C 1.39067 * 120.06074 * 117.98348 * 21 12 9 23 23 C 1.38042 * 119.93446 * 179.76775 * 22 21 12 24 24 C 1.38537 * 120.05950 * 0.51261 * 23 22 21 25 25 F 1.35104 * 119.93256 * 179.71942 * 24 23 22 26 26 C 1.38537 * 120.12927 * 359.74322 * 24 23 22 27 27 C 1.38032 * 120.06508 * 0.02562 * 26 24 23 28 28 C 1.34959 * 120.36466 * 359.49488 * 8 7 6 29 29 N 1.36063 * 126.24687 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47079 * 269.97864 * 1 2 3 31 31 H 1.08998 * 109.46755 * 29.97838 * 1 2 3 32 32 H 1.09005 * 109.46863 * 149.97510 * 1 2 3 33 33 H 1.08004 * 120.38806 * 0.03045 * 6 5 4 34 34 H 1.07997 * 120.12884 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99525 * 185.05024 * 16 15 13 36 36 H 1.07997 * 120.03414 * 0.02562 * 22 21 12 37 37 H 1.07999 * 119.97136 * 180.25306 * 23 22 21 38 38 H 1.07998 * 119.96120 * 179.97438 * 26 24 23 39 39 H 1.08001 * 120.03497 * 179.97438 * 27 26 24 40 40 H 1.08001 * 119.74438 * 180.26014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0549 0.0000 4 7 3.5177 0.7012 -0.0005 5 6 3.5991 -0.6194 -0.0004 6 6 4.6787 -1.5234 -0.0012 7 6 4.4260 -2.8599 -0.0012 8 6 3.0973 -3.3183 -0.0059 9 16 2.7678 -5.0492 -0.0126 10 8 1.4662 -5.2076 -0.5606 11 8 3.9216 -5.6752 -0.5566 12 7 2.6724 -5.5362 1.5672 13 6 1.4933 -5.4140 2.2509 14 1 0.7373 -4.7250 1.9047 15 6 1.2691 -6.1757 3.3891 16 7 1.9924 -7.2520 3.6136 17 14 -0.0593 -5.6732 4.6025 18 1 -1.3761 -5.6573 3.9163 19 1 -0.0981 -6.6452 5.7246 20 1 0.2400 -4.3180 5.1308 21 6 3.7931 -6.0705 2.2006 22 6 4.3383 -5.4308 3.3084 23 6 5.4454 -5.9649 3.9367 24 6 6.0196 -7.1313 3.4580 25 9 7.1065 -7.6487 4.0715 26 6 5.4817 -7.7678 2.3514 27 6 4.3719 -7.2410 1.7220 28 6 2.0726 -2.4400 -0.0001 29 7 2.3115 -1.0973 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 5.6957 -1.1598 -0.0017 34 1 5.2430 -3.5661 -0.0023 35 1 1.7880 -7.8247 4.3694 36 1 3.8936 -4.5192 3.6795 37 1 5.8669 -5.4707 4.7996 38 1 5.9317 -8.6768 1.9803 39 1 3.9532 -7.7374 0.8591 40 1 1.0556 -2.8033 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065199176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = 22.990848 kcal Electronic energy + Delta-G solvation = -32467.070038 eV Core-core repulsion = 27904.512349 eV Total energy + Delta-G solvation = -4562.557689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.079 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -49.64672 -44.83659 -40.15438 -39.48014 -38.29332 -36.88910 -36.77333 -35.58450 -33.39114 -33.10785 -31.94020 -31.79794 -29.84783 -28.57022 -26.45585 -25.86103 -24.71972 -23.72859 -23.20721 -22.79795 -20.68105 -19.92902 -19.38909 -18.92821 -18.42462 -18.33701 -18.12454 -17.92483 -16.96542 -16.70629 -16.32470 -16.29264 -16.10056 -15.78033 -15.52001 -15.03874 -14.79247 -14.39394 -14.27539 -14.23516 -14.12399 -13.78535 -13.60801 -13.50777 -13.38512 -13.21298 -13.16208 -13.14367 -12.95329 -12.79829 -12.66763 -12.41434 -12.37311 -12.30901 -12.16077 -11.84948 -11.77991 -11.32130 -11.05194 -10.26240 -9.73953 -9.35909 -9.05582 -8.04302 -5.90075 -0.92849 -0.64900 -0.31354 0.53813 0.62448 0.98695 1.30251 1.50471 1.53174 1.57865 1.88305 2.18548 2.51175 2.69962 2.75577 2.88910 3.10640 3.20060 3.23166 3.45677 3.53632 3.55841 3.58079 3.99760 4.07154 4.16778 4.23071 4.52400 4.57351 4.59053 4.62476 4.63509 4.72731 4.76157 4.79651 4.92995 5.14554 5.19932 5.29978 5.40834 5.49491 5.50608 5.64850 5.87669 6.15376 6.61080 6.97662 7.20096 7.36177 8.87795 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.004102 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.961534 B = 6824.025833 C = 8007.125648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.158 3.842 3 N -0.282 5.282 4 N -0.323 5.323 5 C 0.199 3.801 6 C -0.091 4.091 7 C -0.023 4.023 8 C -0.688 4.688 9 S 2.694 3.306 10 O -0.970 6.970 11 O -0.969 6.969 12 N -0.812 5.812 13 C -0.359 4.359 14 H 0.113 0.887 15 C 0.019 3.981 16 N -0.877 5.877 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.268 1.268 21 C 0.208 3.792 22 C -0.095 4.095 23 C -0.143 4.143 24 C 0.059 3.941 25 F -0.152 7.152 26 C -0.141 4.141 27 C -0.087 4.087 28 C 0.207 3.793 29 N -0.408 5.408 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.191 0.809 34 H 0.177 0.823 35 H 0.266 0.734 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 6.210 -3.358 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 N -0.119 5.119 4 N -0.166 5.166 5 C -0.050 4.050 6 C -0.113 4.113 7 C -0.048 4.048 8 C -0.776 4.776 9 S 2.785 3.215 10 O -0.961 6.961 11 O -0.959 6.959 12 N -0.637 5.637 13 C -0.486 4.486 14 H 0.131 0.869 15 C -0.187 4.187 16 N -0.513 5.513 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.193 1.193 21 C 0.112 3.888 22 C -0.117 4.117 23 C -0.163 4.163 24 C 0.040 3.960 25 F -0.130 7.130 26 C -0.161 4.161 27 C -0.109 4.109 28 C 0.081 3.919 29 N -0.089 5.089 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.208 0.792 34 H 0.194 0.806 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.096 7.346 -3.990 8.431 hybrid contribution -0.755 -0.841 1.222 1.665 sum 0.341 6.504 -2.768 7.077 Atomic orbital electron populations 1.20644 0.79334 1.06858 1.06246 1.25977 0.98832 0.79822 1.05870 1.74144 0.96800 1.24595 1.16375 1.74889 1.11552 1.06797 1.23338 1.22865 0.85998 0.92663 1.03513 1.20599 0.98117 0.90089 1.02473 1.20950 0.94505 0.96397 0.92931 1.31253 1.00799 1.26736 1.18799 1.01822 0.72834 0.74103 0.72706 1.93507 1.40012 1.85520 1.77015 1.93531 1.51554 1.73518 1.77292 1.50613 1.13385 1.71465 1.28190 1.19250 0.93305 1.25899 1.10194 0.86927 1.25653 0.99261 0.94404 0.99413 1.70000 1.40461 1.11513 1.29330 0.85484 0.79376 0.78150 0.78401 1.19263 1.21837 1.19308 1.17164 0.85580 0.92033 0.94067 1.20999 0.94636 1.00084 0.95964 1.20975 0.97653 0.95917 1.01716 1.17621 0.87267 0.95895 0.95264 1.91414 1.52415 1.86760 1.82457 1.20913 0.97650 1.01522 0.95980 1.20958 0.96133 0.93514 1.00266 1.21873 1.02174 0.79251 0.88616 1.44125 1.09390 1.07299 1.48125 0.87416 0.86536 0.87887 0.79169 0.80594 0.92378 0.85661 0.83691 0.83694 0.86685 0.77362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.41 71.24 0.74 -0.33 16 2 C 0.16 4.08 8.14 137.71 1.12 5.20 16 3 N -0.28 -8.91 12.19 -49.68 -0.61 -9.52 16 4 N -0.32 -10.81 12.31 -55.40 -0.68 -11.50 16 5 C 0.20 6.00 7.92 134.06 1.06 7.06 16 6 C -0.09 -2.26 10.11 22.38 0.23 -2.03 16 7 C -0.02 -0.59 9.53 22.32 0.21 -0.38 16 8 C -0.69 -20.05 5.94 22.08 0.13 -19.92 16 9 S 2.69 96.35 5.57 -56.49 -0.31 96.03 16 10 O -0.97 -38.05 16.44 -128.00 -2.10 -40.15 16 11 O -0.97 -36.39 15.06 -128.00 -1.93 -38.32 16 12 N -0.81 -32.82 2.96 -184.27 -0.55 -33.37 16 13 C -0.36 -15.48 8.99 84.04 0.76 -14.72 16 14 H 0.11 4.46 7.78 -2.91 -0.02 4.44 16 15 C 0.02 0.86 4.87 84.86 0.41 1.27 16 16 N -0.88 -41.99 11.09 21.65 0.24 -41.74 16 17 Si 0.96 36.51 29.60 68.60 2.03 38.54 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 C 0.21 8.37 3.00 38.34 0.11 8.48 16 22 C -0.09 -3.52 8.94 22.42 0.20 -3.32 16 23 C -0.14 -4.84 10.02 22.29 0.22 -4.62 16 24 C 0.06 2.07 7.30 22.41 0.16 2.23 16 25 F -0.15 -5.02 17.26 44.97 0.78 -4.24 16 26 C -0.14 -5.01 10.02 22.29 0.22 -4.78 16 27 C -0.09 -3.47 8.37 22.42 0.19 -3.28 16 28 C 0.21 5.55 10.38 83.23 0.86 6.41 16 29 N -0.41 -11.38 2.95 -342.88 -1.01 -12.39 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.18 3.97 7.66 -2.91 -0.02 3.95 16 35 H 0.27 12.59 8.32 -92.70 -0.77 11.82 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 38 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.12 4.64 7.64 -2.91 -0.02 4.61 16 40 H 0.21 4.57 7.53 -2.91 -0.02 4.55 16 Total: -1.00 -62.70 366.24 3.60 -59.09 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.11 Total: 20.30 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 6.64 Total: -22.73 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -2.61 Total: -108.52 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -4.03 Total: -78.47 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 16 Polarization: 96.35 SS G_CDS: -0.31 Total: 96.03 kcal Total: -62.70 3.60 -59.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065199176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.084 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds