Wall clock time and date at job start Tue Mar 31 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47201 * 2 1 4 4 C 1.35973 * 116.99822 * 179.97438 * 3 2 1 5 5 C 1.38730 * 119.97913 * 180.02562 * 4 3 2 6 6 C 1.38082 * 120.01471 * 180.02562 * 5 4 3 7 7 C 1.38877 * 119.98005 * 359.97438 * 6 5 4 8 8 N 1.40002 * 120.01276 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99563 * 188.10483 * 8 7 6 10 10 C 1.50701 * 109.47006 * 262.62639 * 9 8 7 11 11 H 1.08000 * 120.00049 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00258 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00042 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00256 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47108 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47491 * 120.00260 * 14 12 10 17 17 H 1.48504 * 109.46852 * 239.99696 * 14 12 10 18 18 C 1.34777 * 120.00432 * 8.10539 * 8 7 6 19 19 O 1.21529 * 119.99489 * 5.18997 * 18 8 7 20 20 C 1.48221 * 120.00238 * 185.19652 * 18 8 7 21 21 C 1.40302 * 119.24324 * 173.23165 * 20 18 8 22 22 C 1.36492 * 119.81515 * 179.69917 * 21 20 18 23 23 C 1.40762 * 118.24848 * 0.27898 * 22 21 20 24 24 C 1.40414 * 121.27562 * 180.02562 * 23 22 21 25 25 C 1.36137 * 119.65136 * 180.02562 * 24 23 22 26 26 C 1.39430 * 120.91519 * 359.95198 * 25 24 23 27 27 C 1.35996 * 121.08116 * 0.02883 * 26 25 24 28 28 C 1.40829 * 119.73981 * 359.97438 * 27 26 25 29 29 N 1.31892 * 119.24360 * 353.48724 * 20 18 8 30 30 C 1.38873 * 119.96820 * 0.25711 * 7 6 5 31 31 C 1.38075 * 119.98222 * 359.53034 * 30 7 6 32 32 H 1.09007 * 109.47239 * 299.99631 * 1 2 3 33 33 H 1.08996 * 109.47493 * 59.99627 * 1 2 3 34 34 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 35 35 H 1.09007 * 109.46849 * 239.99995 * 2 1 3 36 36 H 1.08998 * 109.47077 * 120.00698 * 2 1 3 37 37 H 1.07998 * 119.99128 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.00685 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47731 * 22.63138 * 9 8 7 40 40 H 1.09002 * 109.46777 * 142.63349 * 9 8 7 41 41 H 0.96998 * 120.00589 * 179.97438 * 13 12 10 42 42 H 1.08004 * 120.09268 * 359.97047 * 21 20 18 43 43 H 1.07998 * 120.87293 * 180.24920 * 22 21 20 44 44 H 1.08005 * 120.17445 * 359.94608 * 24 23 22 45 45 H 1.07999 * 119.54059 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.45812 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.13197 * 180.02562 * 27 26 25 48 48 H 1.08001 * 120.01143 * 179.75205 * 30 7 6 49 49 H 1.08002 * 119.99216 * 180.19204 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 3.8842 2.8075 0.0011 6 6 5.2530 2.9892 0.0011 7 6 6.0992 1.8880 0.0011 8 7 7.4872 2.0715 0.0006 9 6 8.3778 0.9221 -0.1783 10 6 8.8544 0.4416 1.1682 11 1 8.5264 0.9420 2.0673 12 6 9.7092 -0.6368 1.2523 13 7 10.1091 -1.2460 0.1575 14 14 10.2995 -1.2329 2.9214 15 1 9.7094 -0.3839 3.9872 16 1 9.8782 -2.6428 3.1210 17 1 11.7807 -1.1456 2.9827 18 6 8.0040 3.3054 0.1647 19 8 7.2708 4.2438 0.4070 20 6 9.4663 3.5177 0.0494 21 6 9.9735 4.8255 0.0802 22 6 11.3188 5.0342 -0.0188 23 6 12.1586 3.9129 -0.1562 24 6 13.5515 4.0541 -0.2627 25 6 14.3326 2.9469 -0.3948 26 6 13.7688 1.6720 -0.4251 27 6 12.4240 1.4965 -0.3242 28 6 11.5817 2.6166 -0.1862 29 7 10.2605 2.4733 -0.0850 30 6 5.5680 0.6049 -0.0043 31 6 4.1990 0.4249 0.0001 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.2259 3.6637 0.0015 38 1 5.6653 3.9873 0.0012 39 1 7.8384 0.1191 -0.6806 40 1 9.2352 1.2176 -0.7830 41 1 10.7109 -2.0045 0.2166 42 1 9.3018 5.6645 0.1864 43 1 11.7280 6.0333 0.0070 44 1 14.0009 5.0360 -0.2412 45 1 15.4037 3.0576 -0.4771 46 1 14.4106 0.8098 -0.5303 47 1 12.0037 0.5019 -0.3489 48 1 6.2255 -0.2519 -0.0084 49 1 3.7858 -0.5730 -0.0010 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065487695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:29 Heat of formation + Delta-G solvation = 36.785153 kcal Electronic energy + Delta-G solvation = -33944.999487 eV Core-core repulsion = 29610.429756 eV Total energy + Delta-G solvation = -4334.569731 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.25490 -41.36505 -40.48573 -38.48302 -37.72348 -36.66530 -34.50409 -34.35686 -32.70231 -32.01619 -31.61121 -30.94936 -29.88456 -28.86745 -26.21897 -25.37837 -24.83549 -24.50342 -23.15733 -23.00301 -22.53897 -21.18841 -19.22806 -18.98987 -18.76662 -18.54172 -17.88823 -17.78515 -16.98804 -16.82692 -16.48666 -16.43211 -16.03859 -15.68251 -15.50977 -15.16116 -15.06879 -14.90161 -14.58375 -14.32218 -14.24191 -14.18839 -14.12802 -13.99272 -13.80256 -13.33309 -13.27444 -13.14923 -12.85194 -12.80542 -12.66007 -12.53941 -12.34811 -12.24679 -12.08929 -12.00942 -11.75041 -11.56589 -11.46541 -10.69368 -10.53261 -10.50164 -9.95873 -9.73354 -9.67986 -9.14477 -8.47248 -8.07238 -6.14756 -0.70818 -0.23858 0.37880 0.40796 1.10882 1.32184 1.36075 1.43609 1.51183 1.99276 2.27242 2.34160 2.42492 2.90182 3.06379 3.19003 3.28669 3.63398 3.74639 3.87362 3.95650 3.96450 3.98823 4.08666 4.18764 4.23414 4.32439 4.34483 4.40747 4.47381 4.50813 4.55502 4.59386 4.72774 4.92788 4.94903 4.97305 4.99608 5.12150 5.15242 5.16845 5.20445 5.25957 5.37241 5.38460 5.44944 5.47983 5.56490 5.64131 5.69501 5.84400 5.99656 6.07567 6.20950 6.39871 6.50231 6.81261 6.91613 7.15806 7.46793 8.97087 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.002864 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.149061 B = 9773.509901 C =11676.007268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.327 6.327 4 C 0.097 3.903 5 C -0.135 4.135 6 C -0.138 4.138 7 C 0.100 3.900 8 N -0.521 5.521 9 C 0.233 3.767 10 C -0.501 4.501 11 H 0.025 0.975 12 C 0.046 3.954 13 N -0.902 5.902 14 Si 0.928 3.072 15 H -0.288 1.288 16 H -0.276 1.276 17 H -0.275 1.275 18 C 0.557 3.443 19 O -0.550 6.550 20 C 0.074 3.926 21 C -0.133 4.133 22 C -0.057 4.057 23 C -0.099 4.099 24 C -0.102 4.102 25 C -0.100 4.100 26 C -0.111 4.111 27 C -0.105 4.105 28 C 0.086 3.914 29 N -0.401 5.401 30 C -0.117 4.117 31 C -0.181 4.181 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.014 0.986 40 H 0.089 0.911 41 H 0.264 0.736 42 H 0.157 0.843 43 H 0.191 0.809 44 H 0.172 0.828 45 H 0.167 0.833 46 H 0.146 0.854 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 7.555 -3.293 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.242 6.242 4 C 0.051 3.949 5 C -0.154 4.154 6 C -0.157 4.157 7 C 0.006 3.994 8 N -0.239 5.239 9 C 0.114 3.886 10 C -0.540 4.540 11 H 0.044 0.956 12 C -0.154 4.154 13 N -0.542 5.542 14 Si 0.755 3.245 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.201 1.201 18 C 0.348 3.652 19 O -0.432 6.432 20 C -0.078 4.078 21 C -0.154 4.154 22 C -0.082 4.082 23 C -0.101 4.101 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.124 4.124 28 C -0.037 4.037 29 N -0.112 5.112 30 C -0.137 4.137 31 C -0.200 4.200 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.032 0.968 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.175 0.825 43 H 0.208 0.792 44 H 0.189 0.811 45 H 0.185 0.815 46 H 0.164 0.836 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.644 7.094 -3.274 7.839 hybrid contribution 0.536 -0.674 1.108 1.403 sum -0.108 6.420 -2.166 6.776 Atomic orbital electron populations 1.21783 0.90960 1.04160 1.03295 1.23063 0.97204 0.81103 1.01985 1.86036 1.18090 1.30929 1.89116 1.19004 0.82700 0.94002 0.99144 1.20547 0.94217 0.95473 1.05137 1.22290 0.92362 1.00766 1.00311 1.18340 0.82976 0.94999 1.03128 1.45959 1.05190 1.09488 1.63304 1.20144 0.89075 0.81356 0.97998 1.21088 1.27830 1.13620 0.91498 0.95647 1.25104 0.95777 0.96246 0.98294 1.69983 1.34543 1.22070 1.27576 0.85989 0.78526 0.78183 0.81820 1.21330 1.20145 1.20051 1.18469 0.87711 0.82087 0.76933 1.90355 1.59201 1.42615 1.51015 1.21201 0.93005 0.91475 1.02169 1.21803 0.97593 0.96124 0.99883 1.21797 0.91484 0.99941 0.94969 1.19389 0.96835 0.93227 1.00656 1.21384 0.90203 1.01340 0.99110 1.21403 1.02032 0.91184 0.97147 1.21239 0.93642 0.99592 0.98581 1.21259 0.94264 0.98242 0.98597 1.19490 0.89962 0.93902 1.00348 1.68768 1.04481 1.31172 1.06755 1.20886 0.95580 0.95621 1.01646 1.21160 0.92379 0.99163 1.07313 0.91767 0.91576 0.88211 0.91439 0.91762 0.83393 0.81114 0.96781 0.89372 0.92675 0.82493 0.79221 0.81053 0.81512 0.83633 0.86200 0.85846 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.04 0.88 5.46 71.98 0.39 1.27 16 3 O -0.33 -9.49 10.14 -93.24 -0.95 -10.43 16 4 C 0.10 3.27 6.69 22.51 0.15 3.42 16 5 C -0.13 -4.71 9.98 22.35 0.22 -4.49 16 6 C -0.14 -5.59 8.97 22.39 0.20 -5.39 16 7 C 0.10 4.49 6.49 38.14 0.25 4.74 16 8 N -0.52 -25.16 2.71 -637.98 -1.73 -26.89 16 9 C 0.23 12.13 4.25 85.63 0.36 12.49 16 10 C -0.50 -27.69 8.14 25.60 0.21 -27.48 16 11 H 0.03 1.51 7.81 -2.91 -0.02 1.48 16 12 C 0.05 2.48 5.46 84.65 0.46 2.94 16 13 N -0.90 -48.71 12.77 21.45 0.27 -48.43 16 14 Si 0.93 43.68 29.54 68.60 2.03 45.71 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.56 25.70 7.49 86.90 0.65 26.35 16 19 O -0.55 -24.76 12.80 -3.81 -0.05 -24.81 16 20 C 0.07 3.13 6.65 42.29 0.28 3.42 16 21 C -0.13 -4.32 9.54 22.36 0.21 -4.11 16 22 C -0.06 -1.44 9.88 22.48 0.22 -1.22 16 23 C -0.10 -2.92 5.75 -21.22 -0.12 -3.04 16 24 C -0.10 -2.12 9.77 22.31 0.22 -1.91 16 25 C -0.10 -2.03 9.96 22.07 0.22 -1.81 16 26 C -0.11 -3.04 9.94 22.04 0.22 -2.82 16 27 C -0.10 -3.99 9.99 22.38 0.22 -3.77 16 28 C 0.09 3.39 6.61 40.47 0.27 3.66 16 29 N -0.40 -18.13 4.99 -177.79 -0.89 -19.02 16 30 C -0.12 -4.90 9.15 22.38 0.20 -4.70 16 31 C -0.18 -6.28 9.03 22.35 0.20 -6.08 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.34 7.66 -2.38 -0.02 1.32 16 36 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 37 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.17 7.15 4.71 -46.47 -0.22 6.93 16 39 H 0.01 0.78 6.15 -2.39 -0.01 0.76 16 40 H 0.09 4.80 5.09 -10.32 -0.05 4.75 16 41 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 42 H 0.16 4.49 7.62 -2.91 -0.02 4.47 16 43 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 47 H 0.12 5.41 7.53 -2.91 -0.02 5.39 16 48 H 0.12 5.58 6.22 -2.91 -0.02 5.56 16 49 H 0.15 4.26 6.29 -2.91 -0.02 4.25 16 Total: -1.00 -69.94 403.48 5.23 -64.71 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.75 Total: 29.18 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.79 Total: -10.02 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -2.34 Total: -94.34 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.99 Total: -35.25 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.94 5.23 -64.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065487695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.497 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds