Wall clock time and date at job start Tue Mar 31 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00116 * 2 1 4 4 H 1.48495 * 109.46931 * 269.99645 * 3 2 1 5 5 H 1.48501 * 109.46925 * 29.99496 * 3 2 1 6 6 H 1.48500 * 109.47229 * 149.99375 * 3 2 1 7 7 C 1.37874 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00460 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47244 * 179.97438 * 9 7 2 11 11 N 1.40071 * 125.87159 * 269.99778 * 10 9 7 12 12 C 1.30254 * 109.69312 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.47133 * 359.76987 * 12 11 10 14 14 C 1.36312 * 125.87733 * 89.99856 * 10 9 7 15 15 N 1.33202 * 134.61295 * 359.97438 * 14 10 9 16 16 C 1.31503 * 120.68218 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64895 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19254 * 359.97438 * 17 16 15 19 19 N 1.38111 * 120.81539 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.50703 * 109.46819 * 179.97438 * 20 19 18 22 22 C 1.38460 * 120.44385 * 260.00021 * 21 20 19 23 23 C 1.38757 * 118.48061 * 180.02562 * 22 21 20 24 24 C 1.38164 * 119.29356 * 0.28089 * 23 22 21 25 25 N 1.31869 * 120.83686 * 359.39823 * 24 23 22 26 26 C 1.32340 * 121.65272 * 0.63940 * 25 24 23 27 27 N 1.39814 * 119.68907 * 179.67778 * 26 25 24 28 28 C 1.35845 * 126.10365 * 334.68827 * 27 26 25 29 29 C 1.35281 * 107.61142 * 179.89779 * 28 27 26 30 30 C 1.39953 * 107.97196 * 0.37095 * 29 28 27 31 31 N 1.30818 * 108.36636 * 359.76663 * 30 29 28 32 32 H 0.96998 * 120.00004 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47450 * 59.99547 * 9 7 2 34 34 H 1.08999 * 109.47084 * 299.99507 * 9 7 2 35 35 H 1.07997 * 125.76190 * 179.97438 * 12 11 10 36 36 H 1.07995 * 118.67729 * 179.97438 * 16 15 14 37 37 H 0.96997 * 119.99908 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46913 * 60.00137 * 20 19 18 39 39 H 1.08992 * 109.47256 * 300.00004 * 20 19 18 40 40 H 1.08003 * 120.75844 * 0.02562 * 22 21 20 41 41 H 1.08002 * 120.35012 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.58047 * 179.70335 * 24 23 22 43 43 H 1.07993 * 126.19312 * 0.02562 * 28 27 26 44 44 H 1.08004 * 126.01669 * 180.10326 * 29 28 27 45 45 H 1.07998 * 125.81922 * 179.74994 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 7 2.7363 -4.2365 -1.1345 12 6 3.5497 -5.1870 -0.7716 13 6 3.5908 -5.2261 0.6389 14 6 2.7222 -4.2198 1.1050 15 7 2.5795 -4.0522 2.4187 16 6 3.2326 -4.8155 3.2674 17 7 4.0533 -5.7748 2.8776 18 6 4.2623 -6.0199 1.5887 19 7 5.1223 -7.0243 1.1899 20 6 5.8177 -7.8344 2.1931 21 6 6.6879 -8.8521 1.5016 22 6 6.2621 -10.1625 1.3654 23 6 7.0962 -11.0658 0.7222 24 6 8.3196 -10.6354 0.2459 25 7 8.6951 -9.3790 0.3852 26 6 7.9281 -8.4882 0.9930 27 7 8.3700 -7.1682 1.1238 28 6 9.6640 -6.7549 1.1376 29 6 9.6625 -5.4096 1.2793 30 6 8.3314 -4.9856 1.3631 31 7 7.5576 -6.0363 1.2702 32 1 -0.4850 0.8400 -0.0004 33 1 0.6246 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8903 35 1 4.1020 -5.8335 -1.4374 36 1 3.0931 -4.6511 4.3256 37 1 5.2665 -7.1928 0.2456 38 1 5.0856 -8.3469 2.8172 39 1 6.4373 -7.1889 2.8155 40 1 5.3027 -10.4745 1.7511 41 1 6.7944 -12.0956 0.5997 42 1 8.9744 -11.3356 -0.2512 43 1 10.5360 -7.3859 1.0492 44 1 10.5352 -4.7748 1.3245 45 1 7.9995 -3.9651 1.4842 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:41 Heat of formation + Delta-G solvation = 260.795900 kcal Electronic energy + Delta-G solvation = -33118.325711 eV Core-core repulsion = 28754.514973 eV Total energy + Delta-G solvation = -4363.810737 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.92808 -41.23660 -40.38510 -38.34447 -36.47269 -34.05391 -33.91394 -33.34585 -31.81514 -31.17376 -30.66349 -30.06944 -29.21593 -27.26816 -26.30899 -24.51508 -23.82672 -23.40467 -22.82551 -21.96405 -21.36909 -21.02147 -19.99201 -18.68566 -17.91740 -17.29643 -17.12846 -16.63017 -16.44982 -16.08341 -15.60487 -15.40315 -15.06531 -14.82537 -14.51131 -14.30243 -14.11277 -13.96849 -13.85678 -13.60863 -13.57106 -13.50649 -13.21361 -12.98046 -12.81895 -12.22736 -12.06131 -11.59157 -11.12029 -10.94593 -10.90496 -10.90061 -10.72350 -10.68881 -10.36603 -10.24359 -10.15787 -9.96921 -9.76949 -9.41468 -9.09755 -8.71335 -8.56634 -8.50359 -8.08986 -7.47670 -6.17306 -4.23355 0.21357 0.56603 1.45095 1.70891 1.88049 2.08474 2.58209 3.01163 3.10313 3.18362 3.27491 3.32835 3.39258 3.46667 3.82489 4.04808 4.26643 4.35689 4.37029 4.43987 4.53820 4.71663 4.74396 4.80228 4.84763 4.91585 5.11046 5.18157 5.18554 5.28507 5.31056 5.42563 5.53754 5.58470 5.70187 5.74251 5.76283 5.83376 5.91228 6.32362 6.42782 6.75225 6.78920 7.03507 7.07105 7.09340 7.18663 7.39979 7.50824 7.60764 7.78913 7.96605 8.04083 8.33613 8.78021 8.95090 9.41336 10.90916 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.002371 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.810150 B =11805.165316 C =12746.669356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.334 5.334 11 N -0.247 5.247 12 C 0.070 3.930 13 C -0.336 4.336 14 C 0.364 3.636 15 N -0.559 5.559 16 C 0.367 3.633 17 N -0.621 5.621 18 C 0.522 3.478 19 N -0.681 5.681 20 C 0.191 3.809 21 C -0.154 4.154 22 C -0.034 4.034 23 C -0.185 4.185 24 C 0.136 3.864 25 N -0.505 5.505 26 C 0.386 3.614 27 N -0.335 5.335 28 C 0.071 3.929 29 C -0.258 4.258 30 C 0.062 3.938 31 N -0.254 5.254 32 H 0.267 0.733 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.405 0.595 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.168 0.832 43 H 0.177 0.823 44 H 0.155 0.845 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.709 -23.870 3.999 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.120 5.120 11 N -0.063 5.063 12 C -0.125 4.125 13 C -0.354 4.354 14 C 0.116 3.884 15 N -0.284 5.284 16 C 0.073 3.927 17 N -0.352 5.352 18 C 0.269 3.731 19 N -0.312 5.312 20 C 0.066 3.934 21 C -0.159 4.159 22 C -0.061 4.061 23 C -0.206 4.206 24 C -0.022 4.022 25 N -0.218 5.218 26 C 0.158 3.842 27 N -0.113 5.113 28 C -0.069 4.069 29 C -0.286 4.286 30 C -0.127 4.127 31 N -0.072 5.072 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.194 0.806 36 H 0.208 0.792 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.185 0.815 43 H 0.194 0.806 44 H 0.172 0.828 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 17.346 -23.043 3.635 29.070 hybrid contribution 1.215 0.473 -0.330 1.345 sum 18.561 -22.570 3.304 29.408 Atomic orbital electron populations 1.69919 1.05996 1.27550 1.49545 1.24896 0.94971 0.99327 0.94531 0.86352 0.79749 0.82288 0.78249 1.20404 1.20832 1.19737 1.21253 0.93543 0.89706 1.52450 0.92077 1.19757 0.85721 0.79913 0.99866 1.49409 1.35973 1.27793 0.98848 1.76930 1.11774 1.08198 1.09381 1.23296 0.98899 0.97835 0.92492 1.19564 1.12725 1.07966 0.95175 1.18917 0.91022 0.89959 0.88487 1.67507 1.29942 1.31021 0.99969 1.24349 0.85193 0.84116 0.99048 1.67927 1.26803 1.25875 1.14595 1.17769 0.83692 0.83606 0.88042 1.43981 1.44966 1.33892 1.08371 1.19870 0.93571 0.90018 0.89936 1.20584 0.95706 0.96527 1.03049 1.21572 0.99528 0.91166 0.93831 1.22207 0.95649 1.01668 1.01067 1.22606 0.94536 0.90206 0.94872 1.66992 1.35721 1.03289 1.15770 1.17584 0.90286 0.82484 0.93842 1.45920 1.05020 1.03839 1.56536 1.22804 0.87997 0.96025 1.00112 1.21671 0.98264 0.94048 1.14608 1.24283 0.91998 0.98806 0.97616 1.77955 1.15980 0.90528 1.22723 0.92322 0.92954 0.92317 0.80572 0.79159 0.75883 0.90746 0.89866 0.83442 0.83733 0.81540 0.80561 0.82771 0.79323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 22.01 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.43 9.39 -34.44 -0.32 -15.75 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.26 7.21 6.19 -5.20 -0.03 7.18 16 10 N -0.33 -8.21 3.63 -61.64 -0.22 -8.43 16 11 N -0.25 -5.49 12.45 30.80 0.38 -5.11 16 12 C 0.07 1.26 11.87 -17.11 -0.20 1.06 16 13 C -0.34 -6.36 6.14 -106.81 -0.66 -7.02 16 14 C 0.36 8.25 8.04 -156.23 -1.26 6.99 16 15 N -0.56 -12.08 10.47 -13.97 -0.15 -12.22 16 16 C 0.37 6.34 12.24 -92.12 -1.13 5.22 16 17 N -0.62 -10.15 9.69 -13.62 -0.13 -10.28 16 18 C 0.52 8.37 7.55 -154.85 -1.17 7.20 16 19 N -0.68 -8.39 4.18 -61.26 -0.26 -8.65 16 20 C 0.19 2.01 4.87 -5.19 -0.03 1.99 16 21 C -0.15 -1.36 5.28 -104.29 -0.55 -1.91 16 22 C -0.03 -0.21 9.81 -39.31 -0.39 -0.60 16 23 C -0.19 -0.88 10.11 -39.42 -0.40 -1.28 16 24 C 0.14 0.80 11.18 -17.56 -0.20 0.60 16 25 N -0.51 -4.55 10.01 -12.29 -0.12 -4.67 16 26 C 0.39 3.90 7.40 -154.36 -1.14 2.76 16 27 N -0.33 -3.74 3.63 -12.11 -0.04 -3.78 16 28 C 0.07 0.68 11.20 -16.83 -0.19 0.50 16 29 C -0.26 -2.41 10.80 -39.99 -0.43 -2.84 16 30 C 0.06 0.71 12.02 -17.34 -0.21 0.50 16 31 N -0.25 -3.21 8.36 30.64 0.26 -2.95 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 37 H 0.41 4.70 8.33 -40.82 -0.34 4.36 16 38 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 39 H 0.08 1.06 6.76 -51.93 -0.35 0.71 16 40 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -35.79 396.10 -11.88 -47.67 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.88 Total: 4.54 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -8.39 Total: 6.37 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: 0.45 Total: -81.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.79 -11.88 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 308.463 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 272.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 260.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds