Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00116 * 2 1 4 4 H 1.48495 * 109.46931 * 269.99645 * 3 2 1 5 5 H 1.48501 * 109.46925 * 29.99496 * 3 2 1 6 6 H 1.48500 * 109.47229 * 149.99375 * 3 2 1 7 7 C 1.37874 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00460 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47244 * 179.97438 * 9 7 2 11 11 N 1.40071 * 125.87159 * 269.99778 * 10 9 7 12 12 C 1.30254 * 109.69312 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.47133 * 359.76987 * 12 11 10 14 14 C 1.36312 * 125.87733 * 89.99856 * 10 9 7 15 15 N 1.33202 * 134.61295 * 359.97438 * 14 10 9 16 16 C 1.31503 * 120.68218 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64895 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19254 * 359.97438 * 17 16 15 19 19 N 1.38111 * 120.81539 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.50703 * 109.46819 * 179.97438 * 20 19 18 22 22 C 1.38460 * 120.44385 * 260.00021 * 21 20 19 23 23 C 1.38757 * 118.48061 * 180.02562 * 22 21 20 24 24 C 1.38164 * 119.29356 * 0.28089 * 23 22 21 25 25 N 1.31869 * 120.83686 * 359.39823 * 24 23 22 26 26 C 1.32340 * 121.65272 * 0.63940 * 25 24 23 27 27 N 1.39814 * 119.68907 * 179.67778 * 26 25 24 28 28 C 1.35845 * 126.10365 * 334.68827 * 27 26 25 29 29 C 1.35281 * 107.61142 * 179.89779 * 28 27 26 30 30 C 1.39953 * 107.97196 * 0.37095 * 29 28 27 31 31 N 1.30818 * 108.36636 * 359.76663 * 30 29 28 32 32 H 0.96998 * 120.00004 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47450 * 59.99547 * 9 7 2 34 34 H 1.08999 * 109.47084 * 299.99507 * 9 7 2 35 35 H 1.07997 * 125.76190 * 179.97438 * 12 11 10 36 36 H 1.07995 * 118.67729 * 179.97438 * 16 15 14 37 37 H 0.96997 * 119.99908 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46913 * 60.00137 * 20 19 18 39 39 H 1.08992 * 109.47256 * 300.00004 * 20 19 18 40 40 H 1.08003 * 120.75844 * 0.02562 * 22 21 20 41 41 H 1.08002 * 120.35012 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.58047 * 179.70335 * 24 23 22 43 43 H 1.07993 * 126.19312 * 0.02562 * 28 27 26 44 44 H 1.08004 * 126.01669 * 180.10326 * 29 28 27 45 45 H 1.07998 * 125.81922 * 179.74994 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 7 2.7363 -4.2365 -1.1345 12 6 3.5497 -5.1870 -0.7716 13 6 3.5908 -5.2261 0.6389 14 6 2.7222 -4.2198 1.1050 15 7 2.5795 -4.0522 2.4187 16 6 3.2326 -4.8155 3.2674 17 7 4.0533 -5.7748 2.8776 18 6 4.2623 -6.0199 1.5887 19 7 5.1223 -7.0243 1.1899 20 6 5.8177 -7.8344 2.1931 21 6 6.6879 -8.8521 1.5016 22 6 6.2621 -10.1625 1.3654 23 6 7.0962 -11.0658 0.7222 24 6 8.3196 -10.6354 0.2459 25 7 8.6951 -9.3790 0.3852 26 6 7.9281 -8.4882 0.9930 27 7 8.3700 -7.1682 1.1238 28 6 9.6640 -6.7549 1.1376 29 6 9.6625 -5.4096 1.2793 30 6 8.3314 -4.9856 1.3631 31 7 7.5576 -6.0363 1.2702 32 1 -0.4850 0.8400 -0.0004 33 1 0.6246 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8903 35 1 4.1020 -5.8335 -1.4374 36 1 3.0931 -4.6511 4.3256 37 1 5.2665 -7.1928 0.2456 38 1 5.0856 -8.3469 2.8172 39 1 6.4373 -7.1889 2.8155 40 1 5.3027 -10.4745 1.7511 41 1 6.7944 -12.0956 0.5997 42 1 8.9744 -11.3356 -0.2512 43 1 10.5360 -7.3859 1.0492 44 1 10.5352 -4.7748 1.3245 45 1 7.9995 -3.9651 1.4842 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = 240.064547 kcal Electronic energy + Delta-G solvation = -33119.224690 eV Core-core repulsion = 28754.514973 eV Total energy + Delta-G solvation = -4364.709716 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.80061 -42.57942 -40.99319 -39.79572 -37.59698 -35.76161 -34.69356 -34.53175 -33.32468 -32.71498 -31.49500 -30.98577 -30.25592 -29.17683 -27.29953 -25.49820 -25.12085 -24.98187 -23.93910 -23.16322 -22.04398 -21.74689 -21.53871 -19.46450 -19.28007 -18.80038 -18.62586 -17.83085 -17.64272 -17.02047 -16.64356 -16.55356 -16.31093 -16.17932 -15.55643 -15.30576 -15.24766 -15.08620 -14.93021 -14.83967 -14.58771 -14.45529 -14.23087 -14.03644 -13.81320 -13.69593 -13.66208 -13.04097 -12.84652 -12.73892 -12.38356 -12.34610 -12.27960 -11.79274 -11.71257 -11.48480 -11.36953 -10.95254 -10.75515 -10.72191 -10.56602 -10.13345 -9.99255 -9.72998 -9.33351 -8.88867 -8.34853 -6.51870 -0.37303 0.02087 0.06300 0.59656 1.02403 1.21989 1.32819 1.35992 1.41068 1.50550 1.64223 1.80714 2.12288 2.32093 2.72149 2.94506 3.07934 3.23074 3.33923 3.42473 3.43642 3.65808 3.74248 3.86410 3.88468 3.99690 4.03069 4.13185 4.22875 4.42225 4.47847 4.55965 4.63112 4.73645 4.81727 4.83858 4.87252 5.00995 5.06392 5.15465 5.18050 5.45490 5.48074 5.54906 5.59247 5.77746 5.79146 6.00390 6.08698 6.17639 6.40996 6.53178 6.58960 6.79732 6.85707 7.17480 7.51245 8.72727 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.002371 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.810150 B =11805.165316 C =12746.669356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.044 0.956 9 C 0.286 3.714 10 N -0.366 5.366 11 N -0.291 5.291 12 C 0.098 3.902 13 C -0.344 4.344 14 C 0.340 3.660 15 N -0.607 5.607 16 C 0.377 3.623 17 N -0.616 5.616 18 C 0.531 3.469 19 N -0.657 5.657 20 C 0.196 3.804 21 C -0.166 4.166 22 C -0.032 4.032 23 C -0.168 4.168 24 C 0.133 3.867 25 N -0.524 5.524 26 C 0.359 3.641 27 N -0.339 5.339 28 C 0.067 3.933 29 C -0.258 4.258 30 C 0.042 3.958 31 N -0.285 5.285 32 H 0.274 0.726 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.225 0.775 36 H 0.228 0.772 37 H 0.411 0.589 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.169 0.831 41 H 0.182 0.818 42 H 0.199 0.801 43 H 0.197 0.803 44 H 0.176 0.824 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.140 -26.771 4.120 34.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.063 0.937 9 C 0.167 3.833 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.097 4.097 13 C -0.362 4.362 14 C 0.094 3.906 15 N -0.335 5.335 16 C 0.084 3.916 17 N -0.347 5.347 18 C 0.277 3.723 19 N -0.285 5.285 20 C 0.073 3.927 21 C -0.171 4.171 22 C -0.059 4.059 23 C -0.188 4.188 24 C -0.025 4.025 25 N -0.237 5.237 26 C 0.133 3.867 27 N -0.118 5.118 28 C -0.074 4.074 29 C -0.286 4.286 30 C -0.146 4.146 31 N -0.104 5.104 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.242 0.758 36 H 0.244 0.756 37 H 0.248 0.752 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.187 0.813 41 H 0.199 0.801 42 H 0.216 0.784 43 H 0.214 0.786 44 H 0.194 0.806 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 19.820 -26.018 3.750 32.922 hybrid contribution 0.619 1.021 -0.304 1.232 sum 20.439 -24.997 3.446 32.473 Atomic orbital electron populations 1.70013 1.07368 1.28881 1.49516 1.25802 0.95924 1.02851 0.93570 0.85304 0.78288 0.77759 0.78795 1.19240 1.19280 1.19805 1.21375 0.92823 0.91198 1.53512 0.93735 1.19105 0.85943 0.80904 0.97369 1.49063 1.37305 1.28523 1.00391 1.76875 1.14218 1.10313 1.09180 1.24043 0.96572 0.96147 0.92907 1.19679 1.12811 1.07904 0.95839 1.19304 0.91753 0.90797 0.88791 1.67527 1.32427 1.33435 1.00140 1.25120 0.83548 0.82858 1.00039 1.68081 1.26587 1.25612 1.14432 1.17827 0.83447 0.83617 0.87429 1.44092 1.42932 1.32193 1.09326 1.19855 0.93564 0.89860 0.89459 1.20463 0.95270 0.97204 1.04184 1.21891 1.00573 0.90078 0.93311 1.22617 0.94468 1.02982 0.98740 1.23291 0.95517 0.89526 0.94127 1.67020 1.36099 1.04381 1.16231 1.17802 0.91195 0.82359 0.95360 1.46054 1.05279 1.04091 1.56369 1.23219 0.88250 0.96409 0.99513 1.21921 0.98136 0.94382 1.14181 1.24467 0.93118 0.98817 0.98192 1.77810 1.17234 0.91341 1.23989 0.91694 0.95225 0.94923 0.75826 0.75582 0.75182 0.89629 0.91917 0.81307 0.80087 0.78440 0.78564 0.80640 0.79343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.02 1.12 5.46 84.65 0.46 1.59 16 3 Si 0.98 45.91 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.55 -33.65 9.39 25.60 0.24 -33.41 16 8 H 0.04 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.29 16.72 6.19 85.63 0.53 17.25 16 10 N -0.37 -19.06 3.63 -348.94 -1.27 -20.33 16 11 N -0.29 -13.39 12.45 -56.46 -0.70 -14.09 16 12 C 0.10 3.51 11.87 85.65 1.02 4.53 16 13 C -0.34 -13.09 6.14 -21.28 -0.13 -13.22 16 14 C 0.34 16.04 8.04 134.15 1.08 17.12 16 15 N -0.61 -27.18 10.47 -198.10 -2.07 -29.25 16 16 C 0.38 12.99 12.24 180.87 2.21 15.20 16 17 N -0.62 -19.63 9.69 -197.01 -1.91 -21.54 16 18 C 0.53 16.63 7.55 133.64 1.01 17.64 16 19 N -0.66 -15.16 4.18 -347.73 -1.45 -16.61 16 20 C 0.20 3.82 4.87 85.63 0.42 4.24 16 21 C -0.17 -2.56 5.28 -19.65 -0.10 -2.67 16 22 C -0.03 -0.27 9.81 22.45 0.22 -0.05 16 23 C -0.17 -0.81 10.11 22.38 0.23 -0.58 16 24 C 0.13 1.04 11.18 84.67 0.95 1.99 16 25 N -0.52 -8.14 10.01 -192.80 -1.93 -10.07 16 26 C 0.36 6.64 7.40 132.74 0.98 7.63 16 27 N -0.34 -7.28 3.63 -192.23 -0.70 -7.98 16 28 C 0.07 1.22 11.20 83.39 0.93 2.15 16 29 C -0.26 -4.66 10.80 22.00 0.24 -4.43 16 30 C 0.04 0.97 12.02 85.26 1.02 2.00 16 31 N -0.29 -7.13 8.36 -56.98 -0.48 -7.60 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 36 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 37 H 0.41 8.71 8.33 -92.71 -0.77 7.94 16 38 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 39 H 0.06 1.55 6.76 -2.39 -0.02 1.53 16 40 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.18 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.20 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -83.53 396.10 3.40 -80.13 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.29 Total: 17.69 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 11.31 Total: 36.98 kcal Atomic # 7 Polarization: -172.51 SS G_CDS: -10.22 Total: -182.74 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -83.53 3.40 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 320.199 kcal (2) G-P(sol) polarization free energy of solvation -83.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 236.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 240.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds