Wall clock time and date at job start Tue Mar 31 2020 05:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47333 * 269.99783 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99633 * 3 2 1 6 6 H 1.48497 * 109.47099 * 149.99555 * 3 2 1 7 7 C 1.37877 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00271 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99929 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.46776 * 180.02562 * 9 7 2 11 11 N 1.40070 * 125.87184 * 269.99577 * 10 9 7 12 12 C 1.30256 * 109.69467 * 180.02562 * 11 10 9 13 13 C 1.41171 * 108.46803 * 359.76352 * 12 11 10 14 14 C 1.36321 * 125.87724 * 90.00345 * 10 9 7 15 15 N 1.33199 * 134.61305 * 359.97438 * 14 10 9 16 16 C 1.31504 * 120.68167 * 180.02562 * 15 14 10 17 17 N 1.32123 * 122.64427 * 359.97438 * 16 15 14 18 18 C 1.32855 * 121.19852 * 0.02562 * 17 16 15 19 19 N 1.38109 * 120.81884 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99468 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.46743 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47675 * 305.00437 * 21 20 19 23 23 O 1.42904 * 109.46805 * 65.00395 * 21 20 19 24 24 C 1.50698 * 109.47118 * 184.99872 * 21 20 19 25 25 C 1.38233 * 119.99074 * 265.00843 * 24 21 20 26 26 C 1.38184 * 120.04969 * 180.02562 * 25 24 21 27 27 C 1.38491 * 120.02820 * 0.02562 * 26 25 24 28 28 F 1.35097 * 120.01356 * 180.02562 * 27 26 25 29 29 C 1.38405 * 119.97506 * 359.97438 * 27 26 25 30 30 C 1.38440 * 119.94827 * 359.97438 * 29 27 26 31 31 F 1.35092 * 120.01422 * 179.97438 * 30 29 27 32 32 H 0.96996 * 120.00511 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.47183 * 59.99767 * 9 7 2 34 34 H 1.09004 * 109.46691 * 300.00193 * 9 7 2 35 35 H 1.07995 * 125.76460 * 179.97438 * 12 11 10 36 36 H 1.08001 * 118.67361 * 179.97438 * 16 15 14 37 37 H 0.96991 * 120.00676 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.46807 * 60.00216 * 20 19 18 39 39 H 1.08994 * 109.47226 * 300.00257 * 20 19 18 40 40 H 0.96697 * 114.00343 * 60.00211 * 23 21 20 41 41 H 1.08001 * 119.97160 * 0.02562 * 25 24 21 42 42 H 1.08002 * 119.98457 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.02427 * 179.72712 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 7 4.2731 -3.3492 1.1360 12 6 4.6907 -4.5284 0.7729 13 6 4.7051 -4.5830 -0.6376 14 6 4.2667 -3.3281 -1.1036 15 7 4.1935 -3.1204 -2.4173 16 6 4.5284 -4.0674 -3.2660 17 7 4.9495 -5.2575 -2.8762 18 6 5.0567 -5.5615 -1.5874 19 7 5.4973 -6.8082 -1.1886 20 6 5.8526 -7.8148 -2.1920 21 6 6.3063 -9.0964 -1.4901 22 1 7.1178 -8.8651 -0.8001 23 8 5.2095 -9.6561 -0.7650 24 6 6.7877 -10.0883 -2.5174 25 6 5.9251 -11.0526 -3.0042 26 6 6.3654 -11.9630 -3.9458 27 6 7.6718 -11.9108 -4.4025 28 9 8.1019 -12.8008 -5.3235 29 6 8.5365 -10.9459 -3.9158 30 6 8.0940 -10.0335 -2.9732 31 9 8.9369 -9.0914 -2.4969 32 1 -0.4851 0.8400 -0.0004 33 1 3.8746 -0.6799 0.8911 34 1 3.8752 -0.6802 -0.8889 35 1 4.9745 -5.3300 1.4386 36 1 4.4563 -3.8641 -4.3243 37 1 5.5715 -7.0173 -0.2445 38 1 6.6626 -7.4362 -2.8155 39 1 4.9844 -8.0292 -2.8150 40 1 4.4498 -9.8868 -1.3170 41 1 4.9063 -11.0943 -2.6484 42 1 5.6907 -12.7162 -4.3252 43 1 9.5566 -10.9072 -4.2681 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:34 Heat of formation + Delta-G solvation = 12.313194 kcal Electronic energy + Delta-G solvation = -32333.502394 eV Core-core repulsion = 27437.820268 eV Total energy + Delta-G solvation = -4895.682126 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.59010 -49.56416 -41.46642 -40.14826 -38.59585 -37.73822 -35.87271 -33.75124 -32.58032 -31.87488 -31.51190 -31.42368 -30.01106 -28.05251 -27.51745 -24.48242 -23.99075 -23.74219 -22.93366 -22.25670 -21.92922 -20.11796 -18.98351 -18.13584 -17.97536 -17.89702 -17.16588 -17.11100 -16.65233 -16.50945 -16.36514 -15.87940 -15.82012 -15.59453 -15.17731 -15.02045 -14.96590 -14.52422 -14.32220 -14.09405 -13.81439 -13.76583 -13.52378 -13.34551 -13.11124 -12.71383 -12.63191 -12.44848 -12.10677 -12.05728 -11.78172 -11.34212 -11.07444 -11.03544 -10.86249 -10.70987 -10.27942 -10.15750 -9.72194 -9.69801 -9.34655 -9.26626 -8.76227 -8.73353 -8.28569 -7.70312 -6.22205 -4.24771 0.24747 0.36135 1.23652 1.86743 2.62220 2.81058 2.94683 3.00882 3.21296 3.23307 3.26987 3.28841 3.65956 3.78970 3.90075 3.94084 4.20967 4.26242 4.30483 4.31783 4.43417 4.54743 4.66148 4.70974 4.91412 5.04935 5.08335 5.10474 5.13981 5.25102 5.28663 5.34573 5.40933 5.50392 5.60115 5.65695 6.08807 6.21331 6.48894 6.51441 6.82066 6.86663 6.96525 7.14167 7.30664 7.40125 7.78496 8.10976 8.30900 8.72718 8.80034 9.32584 10.90499 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.001678 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.977458 B =16685.028054 C =16804.967810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.240 5.240 12 C 0.074 3.926 13 C -0.334 4.334 14 C 0.366 3.634 15 N -0.556 5.556 16 C 0.369 3.631 17 N -0.618 5.618 18 C 0.510 3.490 19 N -0.701 5.701 20 C 0.107 3.893 21 C 0.139 3.861 22 H 0.121 0.879 23 O -0.545 6.545 24 C -0.160 4.160 25 C -0.050 4.050 26 C -0.159 4.159 27 C 0.133 3.867 28 F -0.130 7.130 29 C -0.190 4.190 30 C 0.144 3.856 31 F -0.124 7.124 32 H 0.268 0.732 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.185 0.815 36 H 0.196 0.804 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.379 0.621 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 -26.115 -7.802 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.056 5.056 12 C -0.122 4.122 13 C -0.352 4.352 14 C 0.119 3.881 15 N -0.280 5.280 16 C 0.076 3.924 17 N -0.349 5.349 18 C 0.258 3.742 19 N -0.335 5.335 20 C -0.018 4.018 21 C 0.080 3.920 22 H 0.138 0.862 23 O -0.351 6.351 24 C -0.162 4.162 25 C -0.068 4.068 26 C -0.178 4.178 27 C 0.113 3.887 28 F -0.108 7.108 29 C -0.209 4.209 30 C 0.124 3.876 31 F -0.102 7.102 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.202 0.798 36 H 0.212 0.788 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.228 0.772 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.500 -24.728 -7.296 30.610 hybrid contribution 0.419 0.047 -0.186 0.461 sum 16.919 -24.681 -7.482 30.845 Atomic orbital electron populations 1.69866 1.06157 1.27370 1.49067 1.24770 0.94842 0.98831 0.94000 0.86872 0.80344 0.83616 0.79103 1.19504 1.20529 1.18872 1.21101 0.87872 0.95465 1.53159 0.90403 1.20090 0.96683 0.72492 0.98921 1.48957 1.50502 1.13211 0.99112 1.76958 1.16127 1.03641 1.08842 1.23420 1.00190 0.96185 0.92365 1.19571 1.22072 0.98219 0.95352 1.18900 0.92435 0.88347 0.88454 1.67506 1.24790 1.35804 0.99937 1.24412 0.86741 0.82109 0.99185 1.67940 1.28817 1.23650 1.14506 1.17860 0.84242 0.83883 0.88209 1.44104 1.70492 1.09795 1.09154 1.21932 1.01675 0.86968 0.91180 1.20940 0.90302 0.88951 0.91840 0.86151 1.86684 1.26815 1.83735 1.37881 1.20482 0.93184 1.00723 1.01831 1.20641 0.99815 0.92278 0.94041 1.21212 0.94693 1.02000 0.99848 1.17344 0.92836 0.88866 0.89618 1.91555 1.90183 1.65817 1.63246 1.21066 1.02258 0.96909 1.00702 1.17028 0.87284 0.88180 0.95062 1.91568 1.70145 1.62070 1.86446 0.92147 0.93032 0.93086 0.79795 0.78767 0.74870 0.90276 0.90588 0.77209 0.83637 0.83586 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.54 -15.60 9.94 -34.44 -0.34 -15.95 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.24 5.94 5.26 -5.19 -0.03 5.91 16 10 N -0.33 -7.75 3.63 -61.64 -0.22 -7.97 16 11 N -0.24 -5.03 12.45 30.80 0.38 -4.65 16 12 C 0.07 1.22 11.87 -17.11 -0.20 1.02 16 13 C -0.33 -5.91 6.14 -106.82 -0.66 -6.56 16 14 C 0.37 7.90 8.04 -156.22 -1.26 6.64 16 15 N -0.56 -11.40 10.47 -13.97 -0.15 -11.55 16 16 C 0.37 6.00 12.24 -92.12 -1.13 4.87 16 17 N -0.62 -9.40 9.69 -13.62 -0.13 -9.53 16 18 C 0.51 7.53 7.55 -154.85 -1.17 6.36 16 19 N -0.70 -7.17 5.63 -60.08 -0.34 -7.51 16 20 C 0.11 0.85 5.35 -4.04 -0.02 0.83 16 21 C 0.14 0.84 3.01 -27.88 -0.08 0.76 16 22 H 0.12 0.76 7.79 -51.93 -0.40 0.36 16 23 O -0.54 -3.23 12.94 -35.23 -0.46 -3.69 16 24 C -0.16 -0.92 5.07 -104.54 -0.53 -1.45 16 25 C -0.05 -0.21 9.30 -39.60 -0.37 -0.58 16 26 C -0.16 -0.72 10.02 -39.51 -0.40 -1.12 16 27 C 0.13 0.80 7.30 -39.43 -0.29 0.51 16 28 F -0.13 -0.90 17.27 2.25 0.04 -0.87 16 29 C -0.19 -1.16 10.01 -39.45 -0.39 -1.55 16 30 C 0.14 0.97 7.24 -39.43 -0.29 0.68 16 31 F -0.12 -0.98 16.56 2.25 0.04 -0.94 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 34 H 0.05 1.26 7.57 -51.93 -0.39 0.86 16 35 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.41 3.57 8.34 -40.82 -0.34 3.23 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.38 1.11 7.32 45.56 0.33 1.44 16 41 H 0.15 0.24 6.40 -52.49 -0.34 -0.10 16 42 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -35.90 384.15 -9.83 -45.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.64 Total: 2.64 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -7.25 Total: 2.57 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: 0.32 Total: -67.42 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.46 Total: -3.69 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.08 Total: -1.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.90 -9.83 -45.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.044 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds