Wall clock time and date at job start Tue Mar 31 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48507 * 109.46830 * 270.00052 * 3 2 1 5 5 H 1.48501 * 109.47005 * 29.99657 * 3 2 1 6 6 H 1.48498 * 109.47147 * 149.99906 * 3 2 1 7 7 C 1.37879 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99962 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.40068 * 125.87431 * 269.99716 * 10 9 7 12 12 C 1.30251 * 109.69689 * 179.97438 * 11 10 9 13 13 C 1.41171 * 108.46632 * 359.77176 * 12 11 10 14 14 C 1.36317 * 125.87284 * 90.00457 * 10 9 7 15 15 N 1.33194 * 134.61479 * 359.97438 * 14 10 9 16 16 C 1.31507 * 120.67994 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64777 * 359.97438 * 16 15 14 18 18 C 1.32864 * 121.19297 * 0.02562 * 17 16 15 19 19 N 1.38111 * 120.81040 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.53002 * 109.46674 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46889 * 60.00397 * 21 20 19 23 23 O 1.42898 * 109.47187 * 299.99894 * 21 20 19 24 24 C 1.50700 * 109.46790 * 180.02562 * 21 20 19 25 25 C 1.38230 * 119.98586 * 95.00190 * 24 21 20 26 26 C 1.38189 * 120.04916 * 179.97438 * 25 24 21 27 27 C 1.38495 * 120.02514 * 0.02562 * 26 25 24 28 28 F 1.35097 * 120.01188 * 179.97438 * 27 26 25 29 29 C 1.38388 * 119.97465 * 0.02562 * 27 26 25 30 30 C 1.38444 * 119.95236 * 359.97438 * 29 27 26 31 31 F 1.35099 * 120.01360 * 179.97438 * 30 29 27 32 32 H 0.96991 * 120.00577 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.46887 * 59.99799 * 9 7 2 34 34 H 1.08995 * 109.47454 * 299.99702 * 9 7 2 35 35 H 1.07992 * 125.76740 * 179.97438 * 12 11 10 36 36 H 1.08001 * 118.67348 * 179.97438 * 16 15 14 37 37 H 0.96996 * 119.99771 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47039 * 60.00301 * 20 19 18 39 39 H 1.09002 * 109.47239 * 300.00111 * 20 19 18 40 40 H 0.96701 * 114.00188 * 300.00485 * 23 21 20 41 41 H 1.08003 * 119.97551 * 0.02562 * 25 24 21 42 42 H 1.08008 * 119.98406 * 180.26940 * 26 25 24 43 43 H 1.08003 * 120.02431 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7366 -4.2365 -1.1344 12 6 3.5499 -5.1869 -0.7715 13 6 3.5910 -5.2260 0.6390 14 6 2.7222 -4.2198 1.1051 15 7 2.5794 -4.0523 2.4188 16 6 3.2325 -4.8156 3.2674 17 7 4.0525 -5.7754 2.8776 18 6 4.2616 -6.0205 1.5887 19 7 5.1210 -7.0255 1.1900 20 6 5.8155 -7.8363 2.1933 21 6 6.6993 -8.8692 1.4914 22 1 7.4319 -8.3568 0.8679 23 8 5.8869 -9.7149 0.6747 24 6 7.4132 -9.7037 2.5234 25 6 6.8807 -10.9159 2.9204 26 6 7.5345 -11.6824 3.8663 27 6 8.7240 -11.2364 4.4180 28 9 9.3627 -11.9857 5.3431 29 6 9.2575 -10.0224 4.0220 30 6 8.6016 -9.2553 3.0743 31 9 9.1211 -8.0698 2.6872 32 1 -0.4850 0.8399 -0.0004 33 1 0.6248 -2.5571 -0.8897 34 1 0.6242 -2.5568 0.8903 35 1 4.1023 -5.8334 -1.4372 36 1 3.0928 -4.6512 4.3257 37 1 5.2652 -7.1940 0.2457 38 1 5.0828 -8.3483 2.8172 39 1 6.4355 -7.1913 2.8160 40 1 5.2111 -10.2033 1.1645 41 1 5.9534 -11.2647 2.4905 42 1 7.1198 -12.6314 4.1726 43 1 10.1848 -9.6736 4.4520 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:38 Heat of formation + Delta-G solvation = 6.665355 kcal Electronic energy + Delta-G solvation = -32312.324696 eV Core-core repulsion = 27416.397661 eV Total energy + Delta-G solvation = -4895.927035 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.125 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.57451 -49.55493 -41.39122 -40.14267 -38.53253 -37.72515 -35.81841 -33.73611 -32.56463 -31.82821 -31.46078 -31.28078 -29.95063 -27.88441 -27.10856 -24.46466 -23.94756 -23.73843 -23.18879 -22.24824 -21.89697 -20.11240 -18.97504 -18.11890 -17.95534 -17.88490 -17.11958 -16.68367 -16.59676 -16.47397 -16.35195 -15.87017 -15.80844 -15.56072 -15.07342 -15.01661 -14.92419 -14.56203 -14.43933 -14.05341 -13.74531 -13.69281 -13.38382 -13.29004 -13.12556 -12.78178 -12.63084 -12.14968 -12.09950 -11.77221 -11.65696 -11.23504 -11.00633 -10.97676 -10.86737 -10.75757 -10.28079 -10.09328 -9.83451 -9.71481 -9.28326 -9.25903 -8.69623 -8.59107 -8.22759 -7.65346 -6.21333 -4.27725 0.25459 0.36765 1.29782 1.93020 2.63292 2.89254 3.01636 3.09808 3.24242 3.24981 3.30518 3.36717 3.66645 3.79275 3.91261 3.95331 4.21616 4.31331 4.32492 4.38851 4.44754 4.60249 4.71881 4.74737 4.97513 5.07889 5.13853 5.14619 5.16775 5.26223 5.29877 5.37074 5.41824 5.56698 5.61903 5.71843 6.09496 6.29324 6.66716 6.86271 6.96803 7.03455 7.10934 7.20996 7.49719 7.72378 7.90348 7.92381 8.23057 8.72111 8.81978 9.37242 10.86897 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.001703 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.995128 B =16437.711275 C =16783.624833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.336 4.336 14 C 0.363 3.637 15 N -0.553 5.553 16 C 0.366 3.634 17 N -0.620 5.620 18 C 0.509 3.491 19 N -0.702 5.702 20 C 0.107 3.893 21 C 0.139 3.861 22 H 0.121 0.879 23 O -0.545 6.545 24 C -0.160 4.160 25 C -0.050 4.050 26 C -0.159 4.159 27 C 0.133 3.867 28 F -0.130 7.130 29 C -0.190 4.190 30 C 0.145 3.855 31 F -0.124 7.124 32 H 0.268 0.732 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.183 0.817 36 H 0.195 0.805 37 H 0.414 0.586 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.378 0.622 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 -26.386 7.621 31.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.115 3.885 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.351 5.351 18 C 0.257 3.743 19 N -0.336 5.336 20 C -0.018 4.018 21 C 0.080 3.920 22 H 0.139 0.861 23 O -0.351 6.351 24 C -0.162 4.162 25 C -0.068 4.068 26 C -0.178 4.178 27 C 0.113 3.887 28 F -0.108 7.108 29 C -0.209 4.209 30 C 0.125 3.875 31 F -0.102 7.102 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.200 0.800 36 H 0.211 0.789 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.227 0.773 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.725 -25.063 7.153 30.441 hybrid contribution 0.950 0.284 0.167 1.006 sum 16.675 -24.779 7.320 30.752 Atomic orbital electron populations 1.69912 1.05994 1.27630 1.49364 1.24898 0.94985 0.99357 0.94458 0.86342 0.79721 0.82224 0.78288 1.20352 1.20803 1.19765 1.21245 0.93548 0.89672 1.52700 0.92055 1.19798 0.85696 0.79858 1.00000 1.49468 1.35817 1.27721 0.98794 1.76950 1.11532 1.08049 1.09331 1.23389 0.99005 0.97863 0.92326 1.19600 1.12542 1.07880 0.95350 1.18943 0.91083 0.89986 0.88518 1.67514 1.29566 1.30677 1.00015 1.24397 0.85176 0.84025 0.99177 1.67937 1.26747 1.25863 1.14516 1.17868 0.84216 0.84011 0.88247 1.44085 1.46279 1.34143 1.09141 1.21911 0.95712 0.92944 0.91207 1.20952 0.92074 0.88653 0.90354 0.86128 1.86678 1.49889 1.61317 1.37224 1.20480 0.96012 0.98138 1.01586 1.20628 0.99467 0.92116 0.94593 1.21207 0.94990 1.02349 0.99252 1.17339 0.92073 0.89713 0.89543 1.91555 1.81091 1.75140 1.63024 1.21070 1.03525 0.95237 1.01092 1.17035 0.92402 0.82439 0.95625 1.91576 1.86118 1.43091 1.89391 0.92267 0.92796 0.92237 0.80003 0.78884 0.74848 0.90706 0.90249 0.77287 0.83680 0.83613 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.27 9.39 -34.44 -0.32 -15.60 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.26 7.04 6.19 -5.20 -0.03 7.01 16 10 N -0.33 -7.94 3.63 -61.64 -0.22 -8.17 16 11 N -0.24 -5.19 12.45 30.80 0.38 -4.81 16 12 C 0.07 1.17 11.87 -17.11 -0.20 0.97 16 13 C -0.34 -6.04 6.14 -106.82 -0.66 -6.70 16 14 C 0.36 7.98 8.04 -156.23 -1.26 6.72 16 15 N -0.55 -11.60 10.47 -13.97 -0.15 -11.75 16 16 C 0.37 6.07 12.24 -92.12 -1.13 4.94 16 17 N -0.62 -9.60 9.69 -13.62 -0.13 -9.73 16 18 C 0.51 7.64 7.55 -154.85 -1.17 6.47 16 19 N -0.70 -7.32 5.57 -60.07 -0.33 -7.66 16 20 C 0.11 0.87 5.38 -4.04 -0.02 0.85 16 21 C 0.14 0.86 3.07 -27.88 -0.09 0.77 16 22 H 0.12 0.80 7.79 -51.93 -0.40 0.40 16 23 O -0.54 -3.14 12.73 -35.23 -0.45 -3.58 16 24 C -0.16 -0.94 5.07 -104.55 -0.53 -1.47 16 25 C -0.05 -0.21 9.30 -39.60 -0.37 -0.58 16 26 C -0.16 -0.73 10.03 -39.50 -0.40 -1.12 16 27 C 0.13 0.81 7.30 -39.43 -0.29 0.52 16 28 F -0.13 -0.91 17.27 2.25 0.04 -0.87 16 29 C -0.19 -1.19 10.01 -39.45 -0.39 -1.58 16 30 C 0.14 1.00 7.24 -39.43 -0.29 0.72 16 31 F -0.12 -1.02 16.57 2.25 0.04 -0.98 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 37 H 0.41 3.68 8.21 -40.82 -0.34 3.34 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.38 1.01 7.32 45.56 0.33 1.34 16 41 H 0.15 0.22 6.40 -52.48 -0.34 -0.12 16 42 H 0.15 0.38 8.06 -52.48 -0.42 -0.04 16 43 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -34.58 387.45 -10.18 -44.76 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.67 Total: 1.55 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -7.24 Total: 3.71 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: 0.28 Total: -67.19 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.45 Total: -3.58 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.08 Total: -1.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.58 -10.18 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.425 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds