Wall clock time and date at job start Tue Mar 31 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48507 * 109.46830 * 270.00052 * 3 2 1 5 5 H 1.48501 * 109.47005 * 29.99657 * 3 2 1 6 6 H 1.48498 * 109.47147 * 149.99906 * 3 2 1 7 7 C 1.37879 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99962 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.40068 * 125.87431 * 269.99716 * 10 9 7 12 12 C 1.30251 * 109.69689 * 179.97438 * 11 10 9 13 13 C 1.41171 * 108.46632 * 359.77176 * 12 11 10 14 14 C 1.36317 * 125.87284 * 90.00457 * 10 9 7 15 15 N 1.33194 * 134.61479 * 359.97438 * 14 10 9 16 16 C 1.31507 * 120.67994 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64777 * 359.97438 * 16 15 14 18 18 C 1.32864 * 121.19297 * 0.02562 * 17 16 15 19 19 N 1.38111 * 120.81040 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.53002 * 109.46674 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46889 * 60.00397 * 21 20 19 23 23 O 1.42898 * 109.47187 * 299.99894 * 21 20 19 24 24 C 1.50700 * 109.46790 * 180.02562 * 21 20 19 25 25 C 1.38230 * 119.98586 * 95.00190 * 24 21 20 26 26 C 1.38189 * 120.04916 * 179.97438 * 25 24 21 27 27 C 1.38495 * 120.02514 * 0.02562 * 26 25 24 28 28 F 1.35097 * 120.01188 * 179.97438 * 27 26 25 29 29 C 1.38388 * 119.97465 * 0.02562 * 27 26 25 30 30 C 1.38444 * 119.95236 * 359.97438 * 29 27 26 31 31 F 1.35099 * 120.01360 * 179.97438 * 30 29 27 32 32 H 0.96991 * 120.00577 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.46887 * 59.99799 * 9 7 2 34 34 H 1.08995 * 109.47454 * 299.99702 * 9 7 2 35 35 H 1.07992 * 125.76740 * 179.97438 * 12 11 10 36 36 H 1.08001 * 118.67348 * 179.97438 * 16 15 14 37 37 H 0.96996 * 119.99771 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47039 * 60.00301 * 20 19 18 39 39 H 1.09002 * 109.47239 * 300.00111 * 20 19 18 40 40 H 0.96701 * 114.00188 * 300.00485 * 23 21 20 41 41 H 1.08003 * 119.97551 * 0.02562 * 25 24 21 42 42 H 1.08008 * 119.98406 * 180.26940 * 26 25 24 43 43 H 1.08003 * 120.02431 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7366 -4.2365 -1.1344 12 6 3.5499 -5.1869 -0.7715 13 6 3.5910 -5.2260 0.6390 14 6 2.7222 -4.2198 1.1051 15 7 2.5794 -4.0523 2.4188 16 6 3.2325 -4.8156 3.2674 17 7 4.0525 -5.7754 2.8776 18 6 4.2616 -6.0205 1.5887 19 7 5.1210 -7.0255 1.1900 20 6 5.8155 -7.8363 2.1933 21 6 6.6993 -8.8692 1.4914 22 1 7.4319 -8.3568 0.8679 23 8 5.8869 -9.7149 0.6747 24 6 7.4132 -9.7037 2.5234 25 6 6.8807 -10.9159 2.9204 26 6 7.5345 -11.6824 3.8663 27 6 8.7240 -11.2364 4.4180 28 9 9.3627 -11.9857 5.3431 29 6 9.2575 -10.0224 4.0220 30 6 8.6016 -9.2553 3.0743 31 9 9.1211 -8.0698 2.6872 32 1 -0.4850 0.8399 -0.0004 33 1 0.6248 -2.5571 -0.8897 34 1 0.6242 -2.5568 0.8903 35 1 4.1023 -5.8334 -1.4372 36 1 3.0928 -4.6512 4.3257 37 1 5.2652 -7.1940 0.2457 38 1 5.0828 -8.3483 2.8172 39 1 6.4355 -7.1913 2.8160 40 1 5.2111 -10.2033 1.1645 41 1 5.9534 -11.2647 2.4905 42 1 7.1198 -12.6314 4.1726 43 1 10.1848 -9.6736 4.4520 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:37 Heat of formation + Delta-G solvation = -16.075277 kcal Electronic energy + Delta-G solvation = -32313.310804 eV Core-core repulsion = 27416.397661 eV Total energy + Delta-G solvation = -4896.913142 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.10647 -50.04045 -42.81079 -40.63216 -39.81251 -38.38396 -36.79405 -35.69632 -33.83663 -32.96489 -32.52707 -31.88451 -31.10376 -29.27098 -28.46201 -25.64781 -25.22628 -24.72629 -24.15022 -23.44324 -22.48662 -21.55117 -19.45029 -19.41969 -18.84545 -18.79927 -18.40335 -18.01983 -17.76927 -17.09747 -16.89881 -16.80477 -16.67991 -16.38104 -16.28575 -16.10435 -15.66765 -15.49176 -15.28828 -15.05413 -14.96173 -14.85352 -14.84427 -14.20683 -13.87712 -13.72442 -13.65578 -13.54502 -13.08452 -13.04091 -12.75273 -12.49910 -12.40457 -12.39677 -12.30827 -12.20593 -11.80009 -11.50759 -11.36555 -10.75827 -10.62624 -10.12117 -10.07550 -9.76674 -9.70631 -8.99854 -8.35487 -6.52343 -0.18130 -0.03344 -0.02560 0.52873 1.32639 1.35734 1.39696 1.49666 1.64389 1.93316 2.30246 2.31553 2.80641 2.94097 3.01322 3.21899 3.24415 3.36078 3.40478 3.48181 3.58559 3.65252 3.77428 3.84952 3.89583 4.03375 4.11176 4.21950 4.43620 4.62651 4.72736 4.78648 4.82857 4.83730 4.86700 4.87711 5.03253 5.12464 5.17657 5.47715 5.55053 5.69174 5.74452 5.78205 5.94726 6.11151 6.52614 6.57330 6.68868 6.79693 7.17019 7.45437 8.72107 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.001703 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.995128 B =16437.711275 C =16783.624833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.284 3.716 10 N -0.366 5.366 11 N -0.290 5.290 12 C 0.101 3.899 13 C -0.345 4.345 14 C 0.336 3.664 15 N -0.604 5.604 16 C 0.376 3.624 17 N -0.615 5.615 18 C 0.518 3.482 19 N -0.677 5.677 20 C 0.107 3.893 21 C 0.155 3.845 22 H 0.117 0.883 23 O -0.550 6.550 24 C -0.162 4.162 25 C -0.043 4.043 26 C -0.153 4.153 27 C 0.119 3.881 28 F -0.138 7.138 29 C -0.198 4.198 30 C 0.126 3.874 31 F -0.137 7.137 32 H 0.274 0.726 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.239 0.761 36 H 0.230 0.770 37 H 0.425 0.575 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.874 -28.599 7.878 34.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.063 0.937 9 C 0.165 3.835 10 N -0.153 5.153 11 N -0.105 5.105 12 C -0.094 4.094 13 C -0.363 4.363 14 C 0.089 3.911 15 N -0.332 5.332 16 C 0.083 3.917 17 N -0.346 5.346 18 C 0.264 3.736 19 N -0.310 5.310 20 C -0.017 4.017 21 C 0.095 3.905 22 H 0.134 0.866 23 O -0.358 6.358 24 C -0.164 4.164 25 C -0.061 4.061 26 C -0.171 4.171 27 C 0.099 3.901 28 F -0.117 7.117 29 C -0.217 4.217 30 C 0.107 3.893 31 F -0.115 7.115 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.255 0.745 36 H 0.246 0.754 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.195 0.805 42 H 0.186 0.814 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 17.356 -27.360 7.400 33.235 hybrid contribution 0.578 0.695 0.199 0.926 sum 17.934 -26.665 7.600 33.021 Atomic orbital electron populations 1.70005 1.07336 1.28889 1.49454 1.25794 0.95923 1.02836 0.93601 0.85306 0.78222 0.77817 0.78797 1.19206 1.19359 1.19932 1.21381 0.92847 0.91204 1.53554 0.93680 1.19119 0.85966 0.80892 0.97478 1.49096 1.37226 1.28489 1.00444 1.76898 1.14176 1.10366 1.09084 1.24270 0.96429 0.95994 0.92689 1.19736 1.12612 1.07748 0.96154 1.19369 0.91947 0.90974 0.88803 1.67527 1.32153 1.33222 1.00286 1.25163 0.83571 0.82804 1.00137 1.68097 1.26541 1.25520 1.14439 1.17966 0.83970 0.84146 0.87542 1.44187 1.44065 1.32261 1.10481 1.22082 0.95898 0.92938 0.90825 1.20677 0.91544 0.88201 0.90102 0.86581 1.86675 1.50361 1.61285 1.37515 1.20513 0.95643 0.98757 1.01510 1.20998 1.00216 0.91071 0.93825 1.21513 0.94055 1.03066 0.98510 1.17562 0.92855 0.89771 0.89870 1.91533 1.81413 1.75303 1.63442 1.21161 1.03871 0.95512 1.01188 1.17235 0.93260 0.82361 0.96482 1.91540 1.86445 1.43888 1.89629 0.91693 0.95073 0.94898 0.74520 0.75400 0.73545 0.89623 0.91210 0.75511 0.80500 0.81396 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.29 21.45 0.28 -54.46 16 2 C 0.02 1.11 5.46 84.66 0.46 1.57 16 3 Si 0.98 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.55 -33.09 9.39 25.60 0.24 -32.85 16 8 H 0.04 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.28 16.26 6.19 85.63 0.53 16.79 16 10 N -0.37 -18.38 3.63 -348.94 -1.27 -19.65 16 11 N -0.29 -12.65 12.45 -56.46 -0.70 -13.36 16 12 C 0.10 3.25 11.87 85.65 1.02 4.27 16 13 C -0.34 -12.04 6.14 -21.29 -0.13 -12.17 16 14 C 0.34 15.16 8.04 134.15 1.08 16.24 16 15 N -0.60 -25.95 10.47 -198.10 -2.07 -28.03 16 16 C 0.38 12.12 12.24 180.87 2.21 14.33 16 17 N -0.61 -17.78 9.69 -197.01 -1.91 -19.69 16 18 C 0.52 14.38 7.55 133.64 1.01 15.39 16 19 N -0.68 -11.83 5.57 -343.98 -1.92 -13.75 16 20 C 0.11 1.38 5.38 86.38 0.46 1.85 16 21 C 0.15 1.41 3.07 29.85 0.09 1.50 16 22 H 0.12 1.22 7.79 -2.39 -0.02 1.20 16 23 O -0.55 -4.02 12.73 -148.98 -1.90 -5.92 16 24 C -0.16 -1.45 5.07 -19.82 -0.10 -1.55 16 25 C -0.04 -0.20 9.30 22.26 0.21 0.00 16 26 C -0.15 -0.93 10.03 22.32 0.22 -0.71 16 27 C 0.12 1.26 7.30 22.37 0.16 1.43 16 28 F -0.14 -1.80 17.27 44.97 0.78 -1.02 16 29 C -0.20 -2.29 10.01 22.35 0.22 -2.07 16 30 C 0.13 1.58 7.24 22.37 0.16 1.74 16 31 F -0.14 -2.15 16.57 44.97 0.75 -1.41 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.24 4.53 8.06 -2.91 -0.02 4.50 16 36 H 0.23 5.31 8.06 -2.91 -0.02 5.29 16 37 H 0.43 5.80 8.21 -92.71 -0.76 5.04 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.39 0.18 7.32 -74.06 -0.54 -0.36 16 41 H 0.18 -0.37 6.40 -2.91 -0.02 -0.39 16 42 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -80.18 387.45 1.74 -78.44 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -0.18 Total: 5.74 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 7.86 Total: 25.75 kcal Atomic # 7 Polarization: -141.35 SS G_CDS: -7.58 Total: -148.93 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -1.90 Total: -5.92 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.52 Total: -2.43 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.18 1.74 -78.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.363 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds