Wall clock time and date at job start Tue Mar 31 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47378 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47091 * 119.99843 * 3 2 1 7 7 C 1.37877 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00047 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47279 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87558 * 270.04486 * 10 9 7 12 12 C 1.30261 * 109.69308 * 179.97438 * 11 10 9 13 13 C 1.41151 * 108.46935 * 359.97438 * 12 11 10 14 14 C 1.36315 * 125.87784 * 89.99592 * 10 9 7 15 15 N 1.33210 * 134.60844 * 0.03870 * 14 10 9 16 16 C 1.31521 * 120.69091 * 179.97438 * 15 14 10 17 17 N 1.32106 * 122.64760 * 359.97057 * 16 15 14 18 18 C 1.32901 * 121.19356 * 0.05108 * 17 16 15 19 19 N 1.38088 * 120.81647 * 180.24261 * 18 17 16 20 20 C 1.40752 * 120.00177 * 359.71439 * 19 18 17 21 21 C 1.40249 * 126.07289 * 0.02971 * 20 19 18 22 22 N 1.30840 * 108.34527 * 179.97438 * 21 20 19 23 23 N 1.40071 * 108.37156 * 0.02562 * 22 21 20 24 24 C 1.46497 * 126.06031 * 179.97438 * 23 22 21 25 25 C 1.50699 * 109.47263 * 304.97376 * 24 23 22 26 26 C 1.38242 * 119.99537 * 269.72834 * 25 24 23 27 27 C 1.38230 * 119.99567 * 179.76402 * 26 25 24 28 28 C 1.38237 * 120.00229 * 0.50766 * 27 26 25 29 29 C 1.38237 * 119.99904 * 359.74846 * 28 27 26 30 30 C 1.38230 * 120.00288 * 89.99687 * 25 24 23 31 31 C 1.35746 * 126.07891 * 179.71633 * 20 19 18 32 32 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.46958 * 59.99652 * 9 7 2 34 34 H 1.09001 * 109.47123 * 299.99720 * 9 7 2 35 35 H 1.07995 * 125.76714 * 180.02562 * 12 11 10 36 36 H 1.07997 * 118.67496 * 180.02562 * 16 15 14 37 37 H 0.97006 * 119.99871 * 179.72145 * 19 18 17 38 38 H 1.07996 * 125.82933 * 359.97438 * 21 20 19 39 39 H 1.09001 * 109.47166 * 64.97724 * 24 23 22 40 40 H 1.09005 * 109.47161 * 184.97211 * 24 23 22 41 41 H 1.07997 * 120.00450 * 359.97438 * 26 25 24 42 42 H 1.08004 * 120.00431 * 180.22836 * 27 26 25 43 43 H 1.08003 * 120.00226 * 179.72405 * 28 27 26 44 44 H 1.08004 * 120.00362 * 179.97438 * 29 28 27 45 45 H 1.08006 * 119.99886 * 0.02562 * 30 25 24 46 46 H 1.08002 * 126.22100 * 0.02562 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.7369 -4.2360 -1.1344 12 6 3.5500 -5.1868 -0.7714 13 6 3.5865 -5.2297 0.6390 14 6 2.7220 -4.2199 1.1050 15 7 2.5785 -4.0529 2.4188 16 6 3.2311 -4.8166 3.2678 17 7 4.0511 -5.7763 2.8783 18 6 4.2614 -6.0208 1.5890 19 7 5.1165 -7.0292 1.1906 20 6 5.7825 -7.8091 2.1546 21 6 5.6721 -7.6738 3.5462 22 7 6.4376 -8.5730 4.1094 23 7 7.0645 -9.3142 3.0997 24 6 8.0050 -10.4196 3.2987 25 6 9.1442 -9.9591 4.1711 26 6 10.2765 -9.4116 3.5973 27 6 11.3195 -8.9847 4.3977 28 6 11.2346 -9.1148 5.7713 29 6 10.1046 -9.6672 6.3448 30 6 9.0594 -10.0892 5.5447 31 6 6.6414 -8.8297 1.9027 32 1 -0.4849 0.8401 0.0004 33 1 0.6246 -2.5570 -0.8897 34 1 0.6240 -2.5567 0.8903 35 1 4.1034 -5.8325 -1.4370 36 1 3.0902 -4.6530 4.3260 37 1 5.2582 -7.2001 0.2463 38 1 5.0597 -6.9507 4.0644 39 1 7.4912 -11.2513 3.7810 40 1 8.3944 -10.7437 2.3336 41 1 10.3448 -9.3143 2.5239 42 1 12.2026 -8.5535 3.9498 43 1 12.0514 -8.7854 6.3965 44 1 10.0384 -9.7693 7.4180 45 1 8.1767 -10.5213 5.9926 46 1 6.9370 -9.1893 0.9282 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065539119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:48 Heat of formation + Delta-G solvation = 237.629443 kcal Electronic energy + Delta-G solvation = -31509.364557 eV Core-core repulsion = 27209.975158 eV Total energy + Delta-G solvation = -4299.389399 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.150 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.59679 -41.13191 -39.51876 -38.49264 -36.35027 -34.19355 -33.68536 -32.29603 -31.40565 -31.27852 -30.89034 -30.18641 -28.42481 -27.26204 -26.17956 -24.09754 -23.59051 -22.98262 -22.53781 -22.23960 -21.09999 -20.95830 -19.74030 -18.06727 -17.84203 -17.16279 -16.72755 -16.58584 -16.30229 -15.97799 -15.81073 -15.29623 -15.23092 -14.78780 -14.66359 -14.34838 -14.09032 -13.79814 -13.72479 -13.66189 -13.31773 -13.22440 -12.92260 -12.83724 -12.60492 -12.20747 -11.97944 -11.66951 -11.55651 -11.40241 -11.09641 -10.97596 -10.78076 -10.74034 -10.30882 -10.18265 -10.11341 -9.70298 -9.43347 -9.27682 -9.24111 -8.75317 -8.68530 -8.59341 -8.05176 -7.30730 -6.22011 -4.28652 0.82324 1.04839 1.14389 1.70639 1.97207 2.33393 2.87124 2.92819 3.06608 3.11324 3.26725 3.29841 3.34732 3.47350 4.11787 4.30304 4.31243 4.36770 4.51477 4.60496 4.64519 4.66073 4.70593 4.74043 4.85895 4.92163 5.07025 5.12012 5.13543 5.15102 5.24332 5.42126 5.53418 5.58190 5.60404 5.66305 5.73061 6.06059 6.14031 6.16564 6.23268 6.57896 6.60034 6.70613 6.84127 6.96740 7.03059 7.07792 7.23329 7.45823 7.67209 7.73688 7.87571 7.90505 8.18221 8.69177 8.77637 9.36379 10.86151 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.001679 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.656683 B =16674.348154 C =17293.134700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.240 5.240 12 C 0.068 3.932 13 C -0.332 4.332 14 C 0.365 3.635 15 N -0.549 5.549 16 C 0.366 3.634 17 N -0.613 5.613 18 C 0.509 3.491 19 N -0.618 5.618 20 C 0.022 3.978 21 C 0.054 3.946 22 N -0.282 5.282 23 N -0.374 5.374 24 C 0.185 3.815 25 C -0.109 4.109 26 C -0.100 4.100 27 C -0.125 4.125 28 C -0.111 4.111 29 C -0.124 4.124 30 C -0.082 4.082 31 C 0.001 3.999 32 H 0.268 0.732 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.419 0.581 38 H 0.218 0.782 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.689 -24.411 7.196 32.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.117 5.117 11 N -0.056 5.056 12 C -0.127 4.127 13 C -0.350 4.350 14 C 0.117 3.883 15 N -0.273 5.273 16 C 0.072 3.928 17 N -0.343 5.343 18 C 0.257 3.743 19 N -0.243 5.243 20 C -0.083 4.083 21 C -0.134 4.134 22 N -0.103 5.103 23 N -0.160 5.160 24 C 0.064 3.936 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.142 4.142 30 C -0.101 4.101 31 C -0.146 4.146 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.200 0.800 36 H 0.215 0.785 37 H 0.256 0.744 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 19.145 -23.893 8.223 31.703 hybrid contribution 0.731 0.798 -1.498 1.848 sum 19.877 -23.095 6.726 31.204 Atomic orbital electron populations 1.69910 1.05992 1.27755 1.49189 1.24894 0.94989 0.99349 0.94416 0.86402 0.79445 0.81861 0.78882 1.20028 1.20887 1.19941 1.21200 0.93513 0.89658 1.52947 0.92085 1.19814 0.85660 0.79791 1.00069 1.49487 1.35730 1.27702 0.98752 1.76959 1.11309 1.07964 1.09366 1.23380 0.99176 0.97984 0.92199 1.19528 1.12378 1.07776 0.95302 1.18928 0.91012 0.89807 0.88548 1.67528 1.29272 1.30544 0.99962 1.24511 0.85021 0.83865 0.99363 1.67810 1.26558 1.25513 1.14390 1.17758 0.84202 0.83896 0.88395 1.41012 1.43906 1.31751 1.07606 1.17730 1.02505 0.97848 0.90198 1.24963 0.98448 0.98243 0.91749 1.77395 1.11907 1.07825 1.13178 1.48315 1.36006 1.28364 1.03277 1.20441 0.86556 0.86151 1.00493 1.19819 0.94990 1.01783 0.94413 1.21035 0.93311 0.97661 0.99831 1.21132 0.98931 1.00326 0.93935 1.21231 0.98085 0.98548 0.95098 1.21180 0.93829 0.99153 1.00007 1.21056 0.98157 0.98108 0.92769 1.21746 1.02195 0.99125 0.91516 0.92196 0.92751 0.92163 0.79951 0.78529 0.74412 0.76567 0.89148 0.88045 0.86168 0.85971 0.86026 0.85852 0.85730 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 6.96 6.19 -5.20 -0.03 6.92 16 10 N -0.33 -7.77 3.63 -61.65 -0.22 -8.00 16 11 N -0.24 -5.02 12.45 30.80 0.38 -4.63 16 12 C 0.07 1.10 11.87 -17.11 -0.20 0.90 16 13 C -0.33 -5.84 6.14 -106.81 -0.66 -6.50 16 14 C 0.37 7.87 8.04 -156.22 -1.26 6.62 16 15 N -0.55 -11.27 10.47 -13.97 -0.15 -11.42 16 16 C 0.37 5.90 12.24 -92.12 -1.13 4.77 16 17 N -0.61 -9.39 6.65 -13.61 -0.09 -9.48 16 18 C 0.51 7.72 7.52 -154.82 -1.16 6.55 16 19 N -0.62 -7.09 5.59 -9.85 -0.06 -7.14 16 20 C 0.02 0.26 6.92 -83.89 -0.58 -0.32 16 21 C 0.05 0.71 10.85 -17.22 -0.19 0.53 16 22 N -0.28 -3.57 12.40 30.70 0.38 -3.19 16 23 N -0.37 -3.62 3.70 -62.19 -0.23 -3.85 16 24 C 0.18 1.19 6.64 -5.20 -0.03 1.15 16 25 C -0.11 -0.84 5.32 -104.62 -0.56 -1.40 16 26 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 27 C -0.13 -0.91 10.05 -39.58 -0.40 -1.30 16 28 C -0.11 -0.80 10.05 -39.58 -0.40 -1.19 16 29 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 30 C -0.08 -0.66 9.70 -39.59 -0.38 -1.04 16 31 C 0.00 0.01 11.52 -16.65 -0.19 -0.18 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.42 3.50 8.69 -40.82 -0.35 3.15 16 38 H 0.22 2.95 5.62 -52.49 -0.29 2.65 16 39 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.10 0.36 8.02 -51.93 -0.42 -0.05 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 43 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 46 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -35.34 403.96 -11.81 -47.15 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.26 Total: 3.39 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -8.37 Total: -0.64 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: 0.76 Total: -72.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.34 -11.81 -47.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065539119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 284.776 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 249.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 237.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds