Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47378 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47091 * 119.99843 * 3 2 1 7 7 C 1.37877 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00047 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47279 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87558 * 270.04486 * 10 9 7 12 12 C 1.30261 * 109.69308 * 179.97438 * 11 10 9 13 13 C 1.41151 * 108.46935 * 359.97438 * 12 11 10 14 14 C 1.36315 * 125.87784 * 89.99592 * 10 9 7 15 15 N 1.33210 * 134.60844 * 0.03870 * 14 10 9 16 16 C 1.31521 * 120.69091 * 179.97438 * 15 14 10 17 17 N 1.32106 * 122.64760 * 359.97057 * 16 15 14 18 18 C 1.32901 * 121.19356 * 0.05108 * 17 16 15 19 19 N 1.38088 * 120.81647 * 180.24261 * 18 17 16 20 20 C 1.40752 * 120.00177 * 359.71439 * 19 18 17 21 21 C 1.40249 * 126.07289 * 0.02971 * 20 19 18 22 22 N 1.30840 * 108.34527 * 179.97438 * 21 20 19 23 23 N 1.40071 * 108.37156 * 0.02562 * 22 21 20 24 24 C 1.46497 * 126.06031 * 179.97438 * 23 22 21 25 25 C 1.50699 * 109.47263 * 304.97376 * 24 23 22 26 26 C 1.38242 * 119.99537 * 269.72834 * 25 24 23 27 27 C 1.38230 * 119.99567 * 179.76402 * 26 25 24 28 28 C 1.38237 * 120.00229 * 0.50766 * 27 26 25 29 29 C 1.38237 * 119.99904 * 359.74846 * 28 27 26 30 30 C 1.38230 * 120.00288 * 89.99687 * 25 24 23 31 31 C 1.35746 * 126.07891 * 179.71633 * 20 19 18 32 32 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.46958 * 59.99652 * 9 7 2 34 34 H 1.09001 * 109.47123 * 299.99720 * 9 7 2 35 35 H 1.07995 * 125.76714 * 180.02562 * 12 11 10 36 36 H 1.07997 * 118.67496 * 180.02562 * 16 15 14 37 37 H 0.97006 * 119.99871 * 179.72145 * 19 18 17 38 38 H 1.07996 * 125.82933 * 359.97438 * 21 20 19 39 39 H 1.09001 * 109.47166 * 64.97724 * 24 23 22 40 40 H 1.09005 * 109.47161 * 184.97211 * 24 23 22 41 41 H 1.07997 * 120.00450 * 359.97438 * 26 25 24 42 42 H 1.08004 * 120.00431 * 180.22836 * 27 26 25 43 43 H 1.08003 * 120.00226 * 179.72405 * 28 27 26 44 44 H 1.08004 * 120.00362 * 179.97438 * 29 28 27 45 45 H 1.08006 * 119.99886 * 0.02562 * 30 25 24 46 46 H 1.08002 * 126.22100 * 0.02562 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.7369 -4.2360 -1.1344 12 6 3.5500 -5.1868 -0.7714 13 6 3.5865 -5.2297 0.6390 14 6 2.7220 -4.2199 1.1050 15 7 2.5785 -4.0529 2.4188 16 6 3.2311 -4.8166 3.2678 17 7 4.0511 -5.7763 2.8783 18 6 4.2614 -6.0208 1.5890 19 7 5.1165 -7.0292 1.1906 20 6 5.7825 -7.8091 2.1546 21 6 5.6721 -7.6738 3.5462 22 7 6.4376 -8.5730 4.1094 23 7 7.0645 -9.3142 3.0997 24 6 8.0050 -10.4196 3.2987 25 6 9.1442 -9.9591 4.1711 26 6 10.2765 -9.4116 3.5973 27 6 11.3195 -8.9847 4.3977 28 6 11.2346 -9.1148 5.7713 29 6 10.1046 -9.6672 6.3448 30 6 9.0594 -10.0892 5.5447 31 6 6.6414 -8.8297 1.9027 32 1 -0.4849 0.8401 0.0004 33 1 0.6246 -2.5570 -0.8897 34 1 0.6240 -2.5567 0.8903 35 1 4.1034 -5.8325 -1.4370 36 1 3.0902 -4.6530 4.3260 37 1 5.2582 -7.2001 0.2463 38 1 5.0597 -6.9507 4.0644 39 1 7.4912 -11.2513 3.7810 40 1 8.3944 -10.7437 2.3336 41 1 10.3448 -9.3143 2.5239 42 1 12.2026 -8.5535 3.9498 43 1 12.0514 -8.7854 6.3965 44 1 10.0384 -9.7693 7.4180 45 1 8.1767 -10.5213 5.9926 46 1 6.9370 -9.1893 0.9282 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065539119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = 218.001399 kcal Electronic energy + Delta-G solvation = -31510.215693 eV Core-core repulsion = 27209.975158 eV Total energy + Delta-G solvation = -4300.240535 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.150 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.88501 -42.03774 -40.09617 -39.77395 -37.44192 -35.73038 -34.79162 -33.74305 -32.99010 -31.80065 -31.61249 -31.38838 -29.48989 -29.00350 -26.91626 -25.52088 -25.26760 -23.92090 -23.49972 -22.98546 -22.03270 -21.85521 -20.93467 -19.26508 -19.05225 -18.77755 -17.89847 -17.51676 -17.50809 -16.83756 -16.72482 -16.49934 -16.41013 -15.93154 -15.60516 -15.39509 -15.23496 -15.02177 -14.92597 -14.70294 -14.29179 -14.15344 -13.89672 -13.65632 -13.57788 -13.45699 -13.37074 -13.04991 -12.98445 -12.73678 -12.34852 -12.27013 -12.13198 -11.92014 -11.88699 -11.56762 -11.47052 -11.22711 -10.74651 -10.24153 -10.07231 -10.00815 -9.81167 -9.78009 -9.58655 -8.36195 -8.29043 -6.51187 -0.10789 0.27732 0.44799 0.51287 1.06846 1.33120 1.38088 1.38926 1.48603 1.62175 1.64433 2.07160 2.10440 2.32553 2.92951 2.95357 3.02845 3.27132 3.40122 3.58941 3.63176 3.80131 3.85843 4.02316 4.10278 4.13810 4.15683 4.27980 4.36913 4.42058 4.48031 4.62681 4.71428 4.73605 4.84589 4.85181 4.88110 5.06237 5.11174 5.15382 5.48387 5.53322 5.54362 5.61980 5.62889 5.70784 5.78783 5.80809 6.03631 6.09178 6.14217 6.18990 6.53968 6.58919 6.76816 6.90743 7.18066 7.43565 8.72969 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.001679 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.656683 B =16674.348154 C =17293.134700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.285 3.715 10 N -0.366 5.366 11 N -0.288 5.288 12 C 0.102 3.898 13 C -0.338 4.338 14 C 0.338 3.662 15 N -0.601 5.601 16 C 0.375 3.625 17 N -0.609 5.609 18 C 0.516 3.484 19 N -0.591 5.591 20 C -0.013 4.013 21 C 0.035 3.965 22 N -0.311 5.311 23 N -0.368 5.368 24 C 0.177 3.823 25 C -0.119 4.119 26 C -0.108 4.108 27 C -0.137 4.137 28 C -0.122 4.122 29 C -0.137 4.137 30 C -0.099 4.099 31 C 0.036 3.964 32 H 0.274 0.726 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.245 0.755 36 H 0.232 0.768 37 H 0.436 0.564 38 H 0.204 0.796 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.005 -26.626 6.325 35.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.152 5.152 11 N -0.103 5.103 12 C -0.093 4.093 13 C -0.356 4.356 14 C 0.091 3.909 15 N -0.328 5.328 16 C 0.083 3.917 17 N -0.339 5.339 18 C 0.262 3.738 19 N -0.217 5.217 20 C -0.118 4.118 21 C -0.153 4.153 22 N -0.133 5.133 23 N -0.152 5.152 24 C 0.058 3.942 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.155 4.155 28 C -0.140 4.140 29 C -0.155 4.155 30 C -0.118 4.118 31 C -0.112 4.112 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.261 0.739 36 H 0.248 0.752 37 H 0.277 0.723 38 H 0.220 0.780 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.141 0.859 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 22.520 -26.197 7.355 35.320 hybrid contribution -0.065 1.148 -1.073 1.573 sum 22.456 -25.048 6.283 34.222 Atomic orbital electron populations 1.70009 1.07350 1.28918 1.49410 1.25791 0.95914 1.02828 0.93617 0.85374 0.78338 0.77598 0.78960 1.19305 1.19407 1.19716 1.21359 0.92894 0.91169 1.53598 0.93557 1.19119 0.85949 0.80862 0.97500 1.49091 1.37196 1.28504 1.00423 1.76906 1.14012 1.10350 1.09041 1.24339 0.96482 0.96039 0.92429 1.19606 1.12338 1.07476 0.96162 1.19343 0.91909 0.90844 0.88792 1.67536 1.31838 1.33072 1.00317 1.25243 0.83486 0.82684 1.00274 1.68035 1.26323 1.25120 1.14467 1.17835 0.84054 0.84097 0.87783 1.40890 1.42069 1.30004 1.08713 1.17859 1.04721 0.99722 0.89509 1.24853 0.98944 0.98600 0.92859 1.77365 1.12788 1.08633 1.14553 1.48687 1.35332 1.28090 1.03073 1.20836 0.85696 0.85181 1.02529 1.19988 0.95635 1.01948 0.94397 1.21324 0.93122 0.97289 1.00905 1.21447 0.99665 1.00278 0.94111 1.21514 0.98467 0.98399 0.95643 1.21423 0.94028 0.99301 1.00781 1.21231 0.98392 0.98682 0.93479 1.22459 0.99217 0.96656 0.92900 0.91725 0.95019 0.94938 0.73947 0.75235 0.72315 0.77983 0.88215 0.84202 0.84295 0.84437 0.84532 0.84829 0.85855 0.76305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.68 13.29 21.45 0.28 -54.39 16 2 C 0.02 1.11 5.46 84.65 0.46 1.57 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -32.88 9.39 25.60 0.24 -32.64 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.28 16.15 6.19 85.63 0.53 16.68 16 10 N -0.37 -18.14 3.63 -348.95 -1.27 -19.40 16 11 N -0.29 -12.25 12.45 -56.47 -0.70 -12.96 16 12 C 0.10 3.14 11.87 85.64 1.02 4.15 16 13 C -0.34 -11.63 6.14 -21.28 -0.13 -11.76 16 14 C 0.34 15.11 8.04 134.14 1.08 16.19 16 15 N -0.60 -25.74 10.47 -198.11 -2.07 -27.81 16 16 C 0.38 12.23 12.24 180.87 2.21 14.44 16 17 N -0.61 -18.26 6.65 -196.97 -1.31 -19.57 16 18 C 0.52 14.77 7.52 133.65 1.01 15.78 16 19 N -0.59 -11.52 5.59 -185.06 -1.04 -12.56 16 20 C -0.01 -0.27 6.92 37.62 0.26 -0.01 16 21 C 0.03 0.86 10.85 85.33 0.93 1.78 16 22 N -0.31 -7.34 12.40 -56.77 -0.70 -8.05 16 23 N -0.37 -5.77 3.70 -350.67 -1.30 -7.06 16 24 C 0.18 1.60 6.64 85.63 0.57 2.17 16 25 C -0.12 -1.54 5.32 -19.87 -0.11 -1.64 16 26 C -0.11 -1.29 9.70 22.27 0.22 -1.07 16 27 C -0.14 -1.70 10.05 22.27 0.22 -1.47 16 28 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 29 C -0.14 -1.92 10.05 22.27 0.22 -1.70 16 30 C -0.10 -1.47 9.70 22.27 0.22 -1.26 16 31 C 0.04 0.46 11.52 83.49 0.96 1.43 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.03 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.24 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.23 5.44 8.06 -2.91 -0.02 5.42 16 37 H 0.44 5.16 8.69 -92.70 -0.81 4.35 16 38 H 0.20 5.44 5.62 -2.91 -0.02 5.43 16 39 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 40 H 0.14 0.20 8.02 -2.38 -0.02 0.18 16 41 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -83.64 403.96 4.30 -79.34 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.24 Total: 13.99 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 10.13 Total: 21.30 kcal Atomic # 7 Polarization: -153.69 SS G_CDS: -8.10 Total: -161.80 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -83.64 4.30 -79.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065539119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 297.345 kcal (2) G-P(sol) polarization free energy of solvation -83.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 218.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds