Wall clock time and date at job start Tue Mar 31 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46759 * 2 1 4 4 C 1.50703 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.29423 * 124.80591 * 90.00091 * 4 3 2 6 6 C 1.30940 * 117.36751 * 180.02562 * 5 4 3 7 7 C 1.50708 * 122.90792 * 180.02562 * 6 5 4 8 8 C 1.35687 * 114.18581 * 359.97438 * 6 5 4 9 9 C 1.46643 * 126.12770 * 179.97438 * 8 6 5 10 10 O 1.21693 * 120.00363 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99380 * 180.27442 * 9 8 6 12 12 C 1.39482 * 120.00022 * 179.72441 * 11 9 8 13 13 N 1.32294 * 119.72650 * 0.02562 * 12 11 9 14 14 C 1.31959 * 121.68703 * 179.97438 * 13 12 11 15 15 C 1.38073 * 120.95641 * 0.02562 * 14 13 12 16 16 C 1.38789 * 119.36069 * 359.97438 * 15 14 13 17 17 C 1.38785 * 118.45055 * 359.75740 * 16 15 14 18 18 O 1.35977 * 120.49949 * 180.23921 * 17 16 15 19 19 C 1.42904 * 117.00125 * 0.25393 * 18 17 16 20 20 C 1.52997 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46883 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99637 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99734 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47437 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46901 * 120.00159 * 25 23 21 28 28 H 1.48498 * 109.47340 * 239.99564 * 25 23 21 29 29 S 1.70954 * 124.79970 * 270.27175 * 4 3 2 30 30 H 1.08997 * 109.47180 * 60.00338 * 1 2 3 31 31 H 1.09005 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47408 * 299.99829 * 1 2 3 33 33 H 1.08998 * 109.47692 * 240.00352 * 2 1 3 34 34 H 1.08997 * 109.47180 * 119.99661 * 2 1 3 35 35 H 1.08995 * 109.47458 * 59.99777 * 3 2 1 36 36 H 1.09000 * 109.47093 * 299.99246 * 3 2 1 37 37 H 1.08995 * 109.46720 * 269.96196 * 7 6 5 38 38 H 1.08999 * 109.47078 * 29.95596 * 7 6 5 39 39 H 1.09001 * 109.47055 * 149.95337 * 7 6 5 40 40 H 0.97000 * 120.00483 * 359.72918 * 11 9 8 41 41 H 1.08001 * 119.52379 * 179.97438 * 14 13 12 42 42 H 1.08007 * 120.32203 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.77653 * 180.02562 * 16 15 14 44 44 H 1.09003 * 109.46609 * 299.99583 * 19 18 17 45 45 H 1.08999 * 109.47206 * 59.99856 * 19 18 17 46 46 H 1.09000 * 109.47095 * 300.00071 * 20 19 18 47 47 H 1.08999 * 109.47213 * 59.99815 * 20 19 18 48 48 H 0.97001 * 120.00092 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4428 -1.0636 6 6 5.5837 1.4424 -0.8947 7 6 6.5589 1.4431 -2.0437 8 6 5.9752 1.4422 0.4045 9 6 7.3587 1.4412 0.8905 10 8 8.2822 1.4408 0.0979 11 7 7.6075 1.4356 2.2151 12 6 8.9235 1.4288 2.6775 13 7 9.9232 1.4283 1.8112 14 6 11.1824 1.4225 2.2058 15 6 11.5060 1.4161 3.5481 16 6 10.4896 1.4163 4.4931 17 6 9.1745 1.4282 4.0497 18 8 8.1463 1.4337 4.9394 19 6 8.4887 1.4324 6.3268 20 6 7.2106 1.4386 7.1677 21 6 7.5718 1.4366 8.6307 22 1 8.6093 1.4310 8.9308 23 6 6.5777 1.4419 9.5862 24 7 5.3144 1.4482 9.2208 25 14 7.0255 1.4387 11.3997 26 1 8.5033 1.4308 11.5448 27 1 6.4713 2.6542 12.0485 28 1 6.4576 0.2292 12.0477 29 16 4.5231 1.4358 1.4027 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 6.7942 0.4156 -2.3211 38 1 6.1153 1.9571 -2.8964 39 1 7.4723 1.9571 -1.7446 40 1 6.8715 1.4362 2.8469 41 1 11.9713 1.4220 1.4682 42 1 12.5402 1.4117 3.8596 43 1 10.7167 1.4117 5.5489 44 1 9.0701 0.5394 6.5566 45 1 9.0793 2.3194 6.5561 46 1 6.6288 2.3313 6.9379 47 1 6.6204 0.5514 6.9383 48 1 4.6151 1.4523 9.8930 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065592486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:41 Heat of formation + Delta-G solvation = -1.461791 kcal Electronic energy + Delta-G solvation = -30572.701137 eV Core-core repulsion = 26333.802413 eV Total energy + Delta-G solvation = -4238.898724 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.03057 -40.33310 -39.00603 -37.80115 -35.64638 -34.93722 -33.50280 -32.07264 -31.65432 -30.72504 -29.49348 -28.48034 -28.07819 -25.46387 -24.04686 -23.59302 -22.94289 -21.80806 -21.65469 -20.77141 -19.73278 -18.46354 -18.07455 -17.51505 -16.89285 -16.21157 -15.96481 -15.91035 -15.53681 -15.40693 -15.15735 -14.75085 -14.70112 -14.58656 -14.17705 -13.96272 -13.88917 -13.68650 -13.37598 -12.89727 -12.75605 -12.54264 -12.47330 -12.43438 -12.07339 -11.97703 -11.96831 -11.58972 -11.48916 -11.12586 -11.08127 -11.03497 -10.83087 -10.70026 -10.38482 -10.08662 -9.97540 -9.80176 -9.69881 -9.42539 -9.28000 -9.12513 -8.93816 -8.54724 -7.73097 -6.20187 -4.25030 0.00267 0.95105 1.18488 1.36496 1.39892 2.26860 2.73001 3.04995 3.20090 3.27251 3.30166 3.48002 3.66762 3.96761 4.31702 4.34472 4.46086 4.60041 4.63784 4.71555 4.87562 4.90664 5.05303 5.07398 5.15817 5.16905 5.22032 5.31228 5.39978 5.41750 5.53521 5.58707 5.68646 5.72251 5.78459 5.82125 5.86730 5.90543 5.99943 6.12229 6.16468 6.28835 6.50454 6.55788 7.09266 7.30902 7.41003 7.49897 7.59956 7.81206 7.94614 8.11901 8.22569 8.80259 9.40043 10.91245 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.006583 B = 0.002623 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4252.645305 B =10672.572373 C =14763.479442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.048 4.048 4 C 0.067 3.933 5 N -0.478 5.478 6 C 0.154 3.846 7 C -0.090 4.090 8 C -0.306 4.306 9 C 0.591 3.409 10 O -0.463 6.463 11 N -0.647 5.647 12 C 0.328 3.672 13 N -0.442 5.442 14 C 0.076 3.924 15 C -0.157 4.157 16 C -0.147 4.147 17 C 0.070 3.930 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.026 3.974 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.888 5.888 25 Si 0.898 3.102 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 S 0.176 5.824 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.421 0.579 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.146 0.854 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -0.709 -19.123 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.208 4.208 5 N -0.193 5.193 6 C 0.015 3.985 7 C -0.148 4.148 8 C -0.430 4.430 9 C 0.376 3.624 10 O -0.334 6.334 11 N -0.294 5.294 12 C 0.095 3.905 13 N -0.157 5.157 14 C -0.081 4.081 15 C -0.178 4.178 16 C -0.173 4.173 17 C 0.018 3.982 18 O -0.229 6.229 19 C -0.008 4.008 20 C -0.011 4.011 21 C -0.566 4.566 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 S 0.434 5.566 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.259 0.741 41 H 0.175 0.825 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.198 -0.700 -19.953 20.086 hybrid contribution 0.716 -0.004 1.895 2.026 sum -1.481 -0.703 -18.059 18.133 Atomic orbital electron populations 1.21757 0.94677 1.02260 1.02192 1.21552 0.96535 0.94647 1.03143 1.20460 0.84275 0.99311 1.04876 1.27450 1.01857 1.00227 0.91251 1.66104 1.04253 1.17681 1.31232 1.20665 0.89932 0.94386 0.93489 1.20677 0.96947 1.03757 0.93468 1.25408 0.97664 1.22397 0.97531 1.16716 0.86342 0.77318 0.81981 1.90870 1.43564 1.45250 1.53746 1.43260 1.06189 1.72301 1.07687 1.17687 0.85641 1.01373 0.85777 1.67603 0.99282 1.13367 1.35450 1.22420 0.92180 0.99025 0.94469 1.21916 1.00071 1.02141 0.93698 1.21618 0.90995 1.03154 1.01579 1.19580 0.89108 1.00383 0.89122 1.86107 1.30796 1.87519 1.18488 1.23420 1.02554 0.99908 0.74948 1.19135 0.90401 0.98917 0.92642 1.20976 0.93159 1.52435 0.90019 0.92283 1.24976 0.94876 0.94786 0.99447 1.69969 0.99126 1.49565 1.33943 0.86437 0.78675 0.77791 0.84530 1.19631 1.20792 1.20788 1.84267 0.96065 1.65547 1.10691 0.92411 0.92199 0.92269 0.91154 0.91349 0.89016 0.88347 0.90038 0.90748 0.88072 0.74099 0.82454 0.84657 0.83600 0.92863 0.92855 0.95321 0.95326 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 3 C -0.05 -0.36 5.79 -27.88 -0.16 -0.52 16 4 C 0.07 0.71 6.64 -13.29 -0.09 0.63 16 5 N -0.48 -5.91 10.50 -7.70 -0.08 -5.99 16 6 C 0.15 2.00 6.79 -83.88 -0.57 1.43 16 7 C -0.09 -1.02 9.69 36.01 0.35 -0.67 16 8 C -0.31 -4.15 6.48 -37.10 -0.24 -4.39 16 9 C 0.59 9.21 7.74 -12.87 -0.10 9.11 16 10 O -0.46 -8.02 12.52 5.20 0.07 -7.95 16 11 N -0.65 -10.15 5.38 -12.49 -0.07 -10.22 16 12 C 0.33 5.50 7.44 -154.50 -1.15 4.35 16 13 N -0.44 -7.29 7.87 -12.24 -0.10 -7.38 16 14 C 0.08 1.00 11.17 -17.56 -0.20 0.80 16 15 C -0.16 -1.90 10.10 -39.44 -0.40 -2.30 16 16 C -0.15 -2.10 9.14 -39.18 -0.36 -2.46 16 17 C 0.07 1.16 6.72 -38.91 -0.26 0.90 16 18 O -0.32 -5.83 9.38 -19.67 -0.18 -6.02 16 19 C 0.07 1.28 4.70 37.16 0.17 1.45 16 20 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 21 C -0.53 -13.94 9.11 -34.44 -0.31 -14.25 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 25 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 S 0.18 1.98 22.31 -107.50 -2.40 -0.41 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.27 6.01 -51.93 -0.31 0.96 16 40 H 0.42 6.19 7.23 -40.82 -0.29 5.89 16 41 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.15 1.92 6.44 -52.49 -0.34 1.58 16 44 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 45 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 417.06 15.07 6.28 6.28 Total: -1.00 -31.83 417.06 -10.89 -42.72 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.78 Total: 3.35 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.35 Total: -5.34 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.49 Total: -48.09 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.12 Total: -13.97 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.40 Total: -0.41 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.83 -10.89 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065592486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds