Wall clock time and date at job start Tue Mar 31 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46759 * 2 1 4 4 C 1.50703 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.29423 * 124.80591 * 90.00091 * 4 3 2 6 6 C 1.30940 * 117.36751 * 180.02562 * 5 4 3 7 7 C 1.50708 * 122.90792 * 180.02562 * 6 5 4 8 8 C 1.35687 * 114.18581 * 359.97438 * 6 5 4 9 9 C 1.46643 * 126.12770 * 179.97438 * 8 6 5 10 10 O 1.21693 * 120.00363 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99380 * 180.27442 * 9 8 6 12 12 C 1.39482 * 120.00022 * 179.72441 * 11 9 8 13 13 N 1.32294 * 119.72650 * 0.02562 * 12 11 9 14 14 C 1.31959 * 121.68703 * 179.97438 * 13 12 11 15 15 C 1.38073 * 120.95641 * 0.02562 * 14 13 12 16 16 C 1.38789 * 119.36069 * 359.97438 * 15 14 13 17 17 C 1.38785 * 118.45055 * 359.75740 * 16 15 14 18 18 O 1.35977 * 120.49949 * 180.23921 * 17 16 15 19 19 C 1.42904 * 117.00125 * 0.25393 * 18 17 16 20 20 C 1.52997 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46883 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99637 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99734 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47437 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46901 * 120.00159 * 25 23 21 28 28 H 1.48498 * 109.47340 * 239.99564 * 25 23 21 29 29 S 1.70954 * 124.79970 * 270.27175 * 4 3 2 30 30 H 1.08997 * 109.47180 * 60.00338 * 1 2 3 31 31 H 1.09005 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47408 * 299.99829 * 1 2 3 33 33 H 1.08998 * 109.47692 * 240.00352 * 2 1 3 34 34 H 1.08997 * 109.47180 * 119.99661 * 2 1 3 35 35 H 1.08995 * 109.47458 * 59.99777 * 3 2 1 36 36 H 1.09000 * 109.47093 * 299.99246 * 3 2 1 37 37 H 1.08995 * 109.46720 * 269.96196 * 7 6 5 38 38 H 1.08999 * 109.47078 * 29.95596 * 7 6 5 39 39 H 1.09001 * 109.47055 * 149.95337 * 7 6 5 40 40 H 0.97000 * 120.00483 * 359.72918 * 11 9 8 41 41 H 1.08001 * 119.52379 * 179.97438 * 14 13 12 42 42 H 1.08007 * 120.32203 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.77653 * 180.02562 * 16 15 14 44 44 H 1.09003 * 109.46609 * 299.99583 * 19 18 17 45 45 H 1.08999 * 109.47206 * 59.99856 * 19 18 17 46 46 H 1.09000 * 109.47095 * 300.00071 * 20 19 18 47 47 H 1.08999 * 109.47213 * 59.99815 * 20 19 18 48 48 H 0.97001 * 120.00092 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4428 -1.0636 6 6 5.5837 1.4424 -0.8947 7 6 6.5589 1.4431 -2.0437 8 6 5.9752 1.4422 0.4045 9 6 7.3587 1.4412 0.8905 10 8 8.2822 1.4408 0.0979 11 7 7.6075 1.4356 2.2151 12 6 8.9235 1.4288 2.6775 13 7 9.9232 1.4283 1.8112 14 6 11.1824 1.4225 2.2058 15 6 11.5060 1.4161 3.5481 16 6 10.4896 1.4163 4.4931 17 6 9.1745 1.4282 4.0497 18 8 8.1463 1.4337 4.9394 19 6 8.4887 1.4324 6.3268 20 6 7.2106 1.4386 7.1677 21 6 7.5718 1.4366 8.6307 22 1 8.6093 1.4310 8.9308 23 6 6.5777 1.4419 9.5862 24 7 5.3144 1.4482 9.2208 25 14 7.0255 1.4387 11.3997 26 1 8.5033 1.4308 11.5448 27 1 6.4713 2.6542 12.0485 28 1 6.4576 0.2292 12.0477 29 16 4.5231 1.4358 1.4027 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 6.7942 0.4156 -2.3211 38 1 6.1153 1.9571 -2.8964 39 1 7.4723 1.9571 -1.7446 40 1 6.8715 1.4362 2.8469 41 1 11.9713 1.4220 1.4682 42 1 12.5402 1.4117 3.8596 43 1 10.7167 1.4117 5.5489 44 1 9.0701 0.5394 6.5566 45 1 9.0793 2.3194 6.5561 46 1 6.6288 2.3313 6.9379 47 1 6.6204 0.5514 6.9383 48 1 4.6151 1.4523 9.8930 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065592486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:40 Heat of formation + Delta-G solvation = -19.217718 kcal Electronic energy + Delta-G solvation = -30573.471092 eV Core-core repulsion = 26333.802413 eV Total energy + Delta-G solvation = -4239.668679 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.18828 -41.35340 -40.17782 -39.09767 -36.33890 -36.08820 -35.45578 -33.05456 -32.80070 -32.30924 -30.79753 -29.26503 -29.02161 -27.18076 -25.31062 -24.41480 -24.16692 -23.13917 -22.31421 -22.22277 -20.83461 -19.61502 -19.22942 -18.74972 -18.09442 -17.92686 -17.25788 -17.10493 -16.71362 -16.49777 -16.23348 -15.96543 -15.81414 -15.70871 -15.22875 -15.09357 -14.79021 -14.75774 -14.36108 -14.24667 -14.17800 -13.66950 -13.63252 -13.34656 -13.30469 -13.03888 -12.79742 -12.78837 -12.61281 -12.45047 -12.44050 -12.13993 -11.98707 -11.74387 -11.69810 -11.63273 -11.50723 -11.38059 -10.91072 -10.68016 -10.61341 -10.44914 -10.28107 -9.88712 -8.93045 -8.25405 -6.37715 -0.97119 0.01531 0.08011 0.25863 0.42329 1.26898 1.42389 1.42980 1.55546 1.60192 1.93995 2.08179 2.43910 2.82487 2.83915 3.10016 3.27002 3.61498 3.68855 3.82513 3.84502 4.01424 4.02837 4.06526 4.10213 4.28486 4.31723 4.41798 4.44348 4.62311 4.65323 4.69038 4.73782 4.76207 4.83489 4.90809 4.92735 5.05186 5.14998 5.19669 5.23284 5.28912 5.30825 5.42448 5.49954 5.50281 5.72679 5.95566 6.07734 6.28970 6.45247 6.75867 6.77216 7.09241 7.32275 8.87408 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.006583 B = 0.002623 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4252.645305 B =10672.572373 C =14763.479442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.049 4.049 4 C 0.081 3.919 5 N -0.493 5.493 6 C 0.153 3.847 7 C -0.086 4.086 8 C -0.333 4.333 9 C 0.590 3.410 10 O -0.487 6.487 11 N -0.649 5.649 12 C 0.307 3.693 13 N -0.469 5.469 14 C 0.076 3.924 15 C -0.140 4.140 16 C -0.146 4.146 17 C 0.043 3.957 18 O -0.332 6.332 19 C 0.083 3.917 20 C 0.029 3.971 21 C -0.543 4.543 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.258 1.258 27 H -0.279 1.279 28 H -0.279 1.279 29 S 0.182 5.818 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.421 0.579 41 H 0.191 0.809 42 H 0.179 0.821 43 H 0.159 0.841 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.001 0.999 47 H 0.001 0.999 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -0.669 -18.771 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.090 4.090 4 C -0.193 4.193 5 N -0.208 5.208 6 C 0.014 3.986 7 C -0.144 4.144 8 C -0.457 4.457 9 C 0.377 3.623 10 O -0.361 6.361 11 N -0.297 5.297 12 C 0.076 3.924 13 N -0.185 5.185 14 C -0.081 4.081 15 C -0.160 4.160 16 C -0.173 4.173 17 C -0.008 4.008 18 O -0.245 6.245 19 C 0.009 3.991 20 C -0.008 4.008 21 C -0.581 4.581 22 H 0.089 0.911 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.794 3.206 26 H -0.182 1.182 27 H -0.205 1.205 28 H -0.205 1.205 29 S 0.441 5.559 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.259 0.741 41 H 0.208 0.792 42 H 0.196 0.804 43 H 0.177 0.823 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.939 -0.660 -19.602 19.636 hybrid contribution 0.353 -0.022 1.674 1.711 sum -0.586 -0.682 -17.928 17.950 Atomic orbital electron populations 1.21740 0.93349 1.02655 1.02849 1.21532 0.97609 0.93983 1.02507 1.20689 0.81940 1.00029 1.06354 1.28083 1.03071 0.97714 0.90482 1.66188 1.03965 1.18929 1.31723 1.20961 0.90562 0.93365 0.93696 1.20657 0.96154 1.04117 0.93505 1.25281 0.97493 1.24629 0.98285 1.16951 0.86971 0.76666 0.81710 1.90833 1.44530 1.46614 1.54119 1.43321 1.06239 1.72296 1.07823 1.17876 0.86083 1.02407 0.86047 1.67654 1.00468 1.14304 1.36032 1.23115 0.91765 0.97158 0.96055 1.22332 1.01564 0.99511 0.92611 1.21925 0.90400 1.02157 1.02809 1.19742 0.89689 1.02679 0.88656 1.86033 1.32016 1.88496 1.17990 1.22991 0.99789 1.01027 0.75338 1.18952 0.92171 0.96290 0.93367 1.21414 0.93794 1.51843 0.91037 0.91087 1.25943 0.94737 0.94339 1.04402 1.70101 1.00315 1.50704 1.35588 0.85329 0.79044 0.77726 0.78532 1.18171 1.20483 1.20476 1.84237 0.95286 1.65594 1.10741 0.91630 0.91978 0.91737 0.91961 0.91891 0.87242 0.87095 0.89425 0.89156 0.89462 0.74101 0.79247 0.80363 0.82306 0.91634 0.91632 0.98013 0.98014 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 3 C -0.05 -0.68 5.79 29.85 0.17 -0.50 16 4 C 0.08 1.69 6.64 88.46 0.59 2.28 16 5 N -0.49 -12.07 10.50 -178.26 -1.87 -13.94 16 6 C 0.15 4.06 6.79 42.10 0.29 4.35 16 7 C -0.09 -1.98 9.69 71.24 0.69 -1.29 16 8 C -0.33 -9.41 6.48 23.87 0.15 -9.25 16 9 C 0.59 19.31 7.74 86.44 0.67 19.98 16 10 O -0.49 -17.57 12.52 -4.33 -0.05 -17.62 16 11 N -0.65 -21.46 5.38 -311.65 -1.68 -23.14 16 12 C 0.31 10.50 7.44 133.02 0.99 11.49 16 13 N -0.47 -15.35 7.87 -192.64 -1.52 -16.87 16 14 C 0.08 1.84 11.17 84.63 0.95 2.78 16 15 C -0.14 -2.92 10.10 22.36 0.23 -2.69 16 16 C -0.15 -3.90 9.14 22.53 0.21 -3.69 16 17 C 0.04 1.43 6.72 22.70 0.15 1.58 16 18 O -0.33 -12.54 9.38 -93.29 -0.88 -13.42 16 19 C 0.08 3.23 4.70 71.98 0.34 3.57 16 20 C 0.03 1.48 5.34 29.85 0.16 1.64 16 21 C -0.54 -28.78 9.11 25.60 0.23 -28.54 16 22 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 23 C 0.00 0.25 5.46 84.66 0.46 0.72 16 24 N -0.93 -53.82 13.29 21.45 0.28 -53.53 16 25 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 29 S 0.18 4.24 22.31 -56.49 -1.26 2.98 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 2.29 6.01 -2.39 -0.01 2.27 16 40 H 0.42 13.29 7.23 -92.71 -0.67 12.62 16 41 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.16 3.76 6.44 -2.91 -0.02 3.74 16 44 H 0.07 2.37 7.69 -2.39 -0.02 2.35 16 45 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -70.54 417.06 2.55 -67.98 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.33 Total: 23.53 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 7.17 Total: 0.32 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.78 Total: -107.48 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.93 Total: -31.04 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.98 kcal Total: -70.54 2.55 -67.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065592486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.765 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds